Wall clock time and date at job start Tue Mar 31 2020 06:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46281 * 2 1 4 4 C 1.53036 * 109.46414 * 240.01758 * 2 1 3 5 5 C 1.53118 * 109.28048 * 299.18110 * 4 2 1 6 6 C 1.53120 * 109.15720 * 302.33984 * 5 4 2 7 7 C 1.53038 * 109.27761 * 57.65759 * 6 5 4 8 8 H 1.08997 * 109.46210 * 60.83134 * 7 6 5 9 9 C 1.52997 * 109.46480 * 180.81571 * 7 6 5 10 10 N 1.46848 * 109.52508 * 300.81910 * 7 6 5 11 11 C 1.46901 * 111.00379 * 185.84191 * 10 7 6 12 12 C 1.52996 * 109.47348 * 180.18725 * 11 10 7 13 13 C 1.50695 * 109.47380 * 185.89638 * 12 11 10 14 14 O 1.21284 * 119.99750 * 359.97438 * 13 12 11 15 15 N 1.34775 * 120.00243 * 180.02562 * 13 12 11 16 16 C 1.46497 * 120.00218 * 359.97438 * 15 13 12 17 17 C 1.46500 * 119.99916 * 179.97438 * 15 13 12 18 18 C 1.50699 * 109.47462 * 89.99460 * 17 15 13 19 19 H 1.08004 * 119.99937 * 0.02562 * 18 17 15 20 20 C 1.37878 * 120.00395 * 179.97438 * 18 17 15 21 21 N 1.31513 * 119.99370 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00274 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47270 * 90.00089 * 22 20 18 24 24 H 1.48500 * 109.47426 * 210.00316 * 22 20 18 25 25 H 1.48500 * 109.47325 * 330.00247 * 22 20 18 26 26 H 1.08993 * 109.46973 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46736 * 300.00162 * 1 2 3 28 28 H 1.09001 * 109.46613 * 59.99733 * 1 2 3 29 29 H 1.09004 * 109.50156 * 59.12061 * 4 2 1 30 30 H 1.09003 * 109.50214 * 179.23073 * 4 2 1 31 31 H 1.08995 * 109.52370 * 62.24513 * 5 4 2 32 32 H 1.09001 * 109.52165 * 182.44050 * 5 4 2 33 33 H 1.08998 * 109.50420 * 177.59646 * 6 5 4 34 34 H 1.09001 * 109.50805 * 297.67920 * 6 5 4 35 35 H 1.09000 * 109.47196 * 56.36218 * 9 7 6 36 36 H 1.08997 * 109.47671 * 176.36718 * 9 7 6 37 37 H 1.09000 * 109.46932 * 296.36241 * 9 7 6 38 38 H 1.09007 * 109.46863 * 300.18033 * 11 10 7 39 39 H 1.08995 * 109.47370 * 60.17934 * 11 10 7 40 40 H 1.09008 * 109.46628 * 305.89485 * 12 11 10 41 41 H 1.08995 * 109.47507 * 65.88957 * 12 11 10 42 42 H 1.08999 * 109.47324 * 90.00230 * 16 15 13 43 43 H 1.09002 * 109.47424 * 210.00984 * 16 15 13 44 44 H 1.09007 * 109.46944 * 330.00856 * 16 15 13 45 45 H 1.09001 * 109.47142 * 209.99341 * 17 15 13 46 46 H 1.08995 * 109.47374 * 329.99275 * 17 15 13 47 47 H 0.97002 * 119.99440 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2498 5 6 1.5440 -2.1696 -1.2355 6 6 2.0264 -2.8533 0.0469 7 6 1.5169 -2.0705 1.2592 8 1 0.4270 -2.0605 1.2531 9 6 2.0136 -2.7385 2.5429 10 7 2.0190 -0.6918 1.1995 11 6 1.6649 0.0507 2.4166 12 6 2.1997 1.4805 2.3156 13 6 1.9644 2.1983 3.6196 14 8 1.4218 1.6229 4.5391 15 7 2.3559 3.4798 3.7637 16 6 3.0108 4.1750 2.6529 17 6 2.1265 4.1777 5.0312 18 6 3.3140 3.9771 5.9372 19 1 4.1556 3.3890 5.6022 20 6 3.3265 4.5452 7.1934 21 7 2.3023 5.2626 7.6008 22 14 4.7980 4.2960 8.3166 23 1 5.7852 5.3816 8.0875 24 1 4.3507 4.3244 9.7324 25 1 5.4283 2.9839 8.0230 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 1.6640 -0.2165 -2.1399 30 1 3.1299 -0.7095 -1.2574 31 1 0.4546 -2.1820 -1.2672 32 1 1.9407 -2.6990 -2.1018 33 1 1.6408 -3.8721 0.0833 34 1 3.1161 -2.8759 0.0595 35 1 3.1012 -2.8069 2.5195 36 1 1.7052 -2.1455 3.4039 37 1 1.5881 -3.7390 2.6198 38 1 0.5805 0.0752 2.5246 39 1 2.1053 -0.4416 3.2836 40 1 3.2686 1.4544 2.1030 41 1 1.6824 2.0061 1.5130 42 1 2.2574 4.6656 2.0365 43 1 3.7001 4.9217 3.0473 44 1 3.5622 3.4550 2.0482 45 1 1.9908 5.2422 4.8405 46 1 1.2327 3.7775 5.5098 47 1 2.3109 5.6620 8.4847 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034674281.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:06 Heat of formation + Delta-G solvation = -64.316705 kcal Electronic energy + Delta-G solvation = -23414.503335 eV Core-core repulsion = 20209.880239 eV Total energy + Delta-G solvation = -3204.623097 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.20727 -40.28137 -36.63358 -35.25718 -34.70182 -34.20119 -31.65548 -29.75248 -28.79830 -27.43981 -27.29427 -25.81848 -24.41094 -22.67035 -22.05407 -19.92241 -19.31854 -18.70661 -18.03722 -17.12492 -16.97425 -16.49154 -16.46426 -15.98814 -15.74650 -15.06440 -14.93856 -14.44924 -14.34650 -14.01740 -13.76830 -13.62008 -13.45152 -13.40318 -13.26572 -13.13252 -12.95931 -12.85895 -12.71049 -12.56241 -12.48115 -12.29112 -12.21267 -12.16965 -11.72372 -11.69730 -11.35277 -11.02164 -10.93868 -10.65111 -10.59185 -9.42006 -9.17821 -8.23433 -6.38565 1.35676 1.38930 1.49412 1.83907 2.29003 2.42387 2.96780 3.05956 3.76588 3.82388 3.91456 3.93658 4.07585 4.18829 4.24106 4.35347 4.39779 4.47949 4.54711 4.57118 4.59464 4.67684 4.71602 4.75245 4.85371 4.89134 4.96033 4.99167 5.02968 5.06266 5.10727 5.16027 5.18996 5.21522 5.23417 5.30690 5.34236 5.41159 5.55599 5.62580 5.83860 6.05381 6.15558 6.28880 6.68833 6.79164 7.27337 7.48470 8.83681 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027331 B = 0.003638 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.218563 B = 7693.766811 C = 8144.380436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.069 3.931 3 H 0.090 0.910 4 C -0.106 4.106 5 C -0.121 4.121 6 C -0.105 4.105 7 C 0.076 3.924 8 H 0.038 0.962 9 C -0.151 4.151 10 N -0.527 5.527 11 C 0.077 3.923 12 C -0.117 4.117 13 C 0.494 3.506 14 O -0.601 6.601 15 N -0.611 5.611 16 C 0.078 3.922 17 C 0.259 3.741 18 C -0.544 4.544 19 H 0.053 0.947 20 C 0.006 3.994 21 N -0.929 5.929 22 Si 0.969 3.031 23 H -0.262 1.262 24 H -0.280 1.280 25 H -0.273 1.273 26 H 0.060 0.940 27 H 0.037 0.963 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.039 0.961 37 H 0.072 0.928 38 H 0.023 0.977 39 H 0.064 0.936 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.071 0.929 43 H 0.065 0.935 44 H 0.094 0.906 45 H 0.023 0.977 46 H -0.004 1.004 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.336 -12.680 -21.838 25.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.039 4.039 3 H 0.108 0.892 4 C -0.144 4.144 5 C -0.159 4.159 6 C -0.143 4.143 7 C -0.031 4.031 8 H 0.056 0.944 9 C -0.208 4.208 10 N -0.251 5.251 11 C -0.051 4.051 12 C -0.156 4.156 13 C 0.283 3.717 14 O -0.483 6.483 15 N -0.342 5.342 16 C -0.064 4.064 17 C 0.137 3.863 18 C -0.582 4.582 19 H 0.071 0.929 20 C -0.193 4.193 21 N -0.569 5.569 22 Si 0.793 3.207 23 H -0.186 1.186 24 H -0.206 1.206 25 H -0.198 1.198 26 H 0.079 0.921 27 H 0.057 0.943 28 H 0.094 0.906 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.058 0.942 37 H 0.091 0.909 38 H 0.042 0.958 39 H 0.083 0.917 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.089 0.911 43 H 0.084 0.916 44 H 0.113 0.887 45 H 0.041 0.959 46 H 0.014 0.986 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.514 -12.866 -21.263 24.857 hybrid contribution -0.577 0.335 1.434 1.582 sum -0.063 -12.531 -19.829 23.457 Atomic orbital electron populations 1.22474 0.97752 1.02235 1.02038 1.21913 0.92815 0.98854 0.90341 0.89173 1.21576 1.01277 0.95519 0.95994 1.21624 1.00766 0.95877 0.97622 1.21593 1.01421 0.98342 0.92936 1.21681 0.96905 0.88164 0.96399 0.94404 1.21943 1.02009 1.00466 0.96402 1.62239 1.59527 1.01978 1.01406 1.21656 0.97597 0.92588 0.93253 1.21617 1.04944 0.95441 0.93647 1.21369 0.77980 0.81822 0.90506 1.90628 1.45894 1.66910 1.44862 1.48197 1.58174 1.12502 1.15366 1.21940 0.97839 0.98292 0.88299 1.18741 0.95431 0.91107 0.81010 1.21716 1.03586 1.32214 1.00730 0.92900 1.25887 0.99488 0.94567 0.99313 1.70057 1.31933 1.34627 1.20272 0.85391 0.78896 0.78810 0.77572 1.18645 1.20567 1.19807 0.92068 0.94347 0.90604 0.90117 0.91308 0.92014 0.90584 0.90638 0.91448 0.92031 0.94160 0.90916 0.95837 0.91728 0.86754 0.86911 0.91089 0.91602 0.88727 0.95876 0.98612 0.92377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.40 8.18 71.98 0.59 -2.81 16 2 C 0.07 1.25 2.59 44.94 0.12 1.36 16 3 H 0.09 1.56 6.03 -2.39 -0.01 1.55 16 4 C -0.11 -1.48 5.61 30.65 0.17 -1.31 16 5 C -0.12 -1.60 5.70 30.67 0.17 -1.43 16 6 C -0.11 -1.64 5.37 30.65 0.16 -1.48 16 7 C 0.08 1.58 2.15 44.94 0.10 1.68 16 8 H 0.04 0.83 6.19 -2.39 -0.01 0.82 16 9 C -0.15 -3.31 8.89 71.98 0.64 -2.67 16 10 N -0.53 -11.94 4.52 -846.02 -3.82 -15.76 16 11 C 0.08 2.28 3.50 86.30 0.30 2.58 16 12 C -0.12 -3.37 3.68 29.85 0.11 -3.26 16 13 C 0.49 21.15 7.67 87.66 0.67 21.82 16 14 O -0.60 -32.19 15.48 -3.04 -0.05 -32.24 16 15 N -0.61 -26.60 2.86 -851.14 -2.43 -29.03 16 16 C 0.08 2.35 10.24 127.77 1.31 3.66 16 17 C 0.26 14.37 5.16 85.63 0.44 14.81 16 18 C -0.54 -32.16 9.39 25.60 0.24 -31.92 16 19 H 0.05 3.10 7.81 -2.91 -0.02 3.07 16 20 C 0.01 0.37 5.46 84.66 0.46 0.83 16 21 N -0.93 -57.22 13.29 21.45 0.28 -56.94 16 22 Si 0.97 45.69 29.54 68.60 2.03 47.72 16 23 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 24 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 25 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 26 H 0.06 1.11 4.80 -2.39 -0.01 1.09 16 27 H 0.04 0.86 6.64 -2.39 -0.02 0.84 16 28 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 30 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.06 0.82 6.55 -2.39 -0.02 0.80 16 32 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.04 1.07 6.11 -2.39 -0.01 1.06 16 37 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.02 0.76 6.67 -2.38 -0.02 0.74 16 39 H 0.06 2.23 5.92 -2.39 -0.01 2.22 16 40 H 0.11 2.93 7.40 -2.38 -0.02 2.91 16 41 H 0.11 2.61 6.53 -2.39 -0.02 2.60 16 42 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.07 2.09 8.07 -2.39 -0.02 2.07 16 44 H 0.09 2.16 6.44 -2.38 -0.02 2.14 16 45 H 0.02 1.30 8.07 -2.39 -0.02 1.28 16 46 H 0.00 -0.27 7.42 -2.39 -0.02 -0.29 16 47 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -74.17 352.85 2.43 -71.73 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 0.93 Total: 12.67 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: 5.49 Total: 1.85 kcal Atomic # 7 Polarization: -95.76 SS G_CDS: -5.97 Total: -101.73 kcal Atomic # 8 Polarization: -32.19 SS G_CDS: -0.05 Total: -32.24 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -74.17 2.43 -71.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034674281.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.418 kcal (2) G-P(sol) polarization free energy of solvation -74.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds