Wall clock time and date at job start Tue Mar 31 2020 06:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.08996 * 109.53226 * 2 1 4 4 C 1.53117 * 109.50425 * 239.89894 * 2 1 3 5 5 C 1.53113 * 109.15997 * 182.40462 * 4 2 1 6 6 C 1.53044 * 109.27660 * 57.65963 * 5 4 2 7 7 N 1.46847 * 109.51991 * 300.81630 * 6 5 4 8 8 C 1.46906 * 110.99629 * 185.83788 * 7 6 5 9 9 C 1.53000 * 109.46893 * 45.79738 * 8 7 6 10 10 C 1.50703 * 109.46653 * 179.97438 * 9 8 7 11 11 O 1.21279 * 120.00049 * 359.97438 * 10 9 8 12 12 N 1.34779 * 119.99541 * 179.97438 * 10 9 8 13 13 C 1.46499 * 120.00212 * 359.97438 * 12 10 9 14 14 C 1.46502 * 119.99726 * 179.97438 * 12 10 9 15 15 C 1.50691 * 109.47318 * 269.99867 * 14 12 10 16 16 H 1.08001 * 119.99896 * 0.02562 * 15 14 12 17 17 C 1.37874 * 120.00413 * 179.97438 * 15 14 12 18 18 N 1.31517 * 120.00255 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 119.99824 * 0.02562 * 17 15 14 20 20 H 1.48507 * 109.47024 * 89.99663 * 19 17 15 21 21 H 1.48499 * 109.47038 * 209.99658 * 19 17 15 22 22 H 1.48504 * 109.47057 * 329.99923 * 19 17 15 23 23 C 1.46853 * 111.19769 * 61.74579 * 7 6 5 24 24 H 1.08993 * 109.46036 * 178.23911 * 23 7 6 25 25 C 1.53004 * 109.46235 * 58.25936 * 23 7 6 26 26 H 1.08996 * 109.47085 * 299.90558 * 1 2 3 27 27 H 1.09004 * 109.46492 * 59.90370 * 1 2 3 28 28 H 1.08999 * 109.47211 * 179.89947 * 1 2 3 29 29 H 1.08998 * 109.52584 * 302.31517 * 4 2 1 30 30 H 1.09008 * 109.51940 * 62.50275 * 4 2 1 31 31 H 1.08998 * 109.50378 * 177.59587 * 5 4 2 32 32 H 1.08996 * 109.50613 * 297.67983 * 5 4 2 33 33 H 1.09001 * 109.46138 * 180.80490 * 6 5 4 34 34 H 1.08992 * 109.46162 * 60.83473 * 6 5 4 35 35 H 1.08994 * 109.47004 * 285.78840 * 8 7 6 36 36 H 1.09007 * 109.46353 * 165.79101 * 8 7 6 37 37 H 1.08996 * 109.47332 * 59.99971 * 9 8 7 38 38 H 1.08996 * 109.46646 * 299.99107 * 9 8 7 39 39 H 1.09002 * 109.47391 * 270.00122 * 13 12 10 40 40 H 1.09001 * 109.46813 * 150.00179 * 13 12 10 41 41 H 1.09004 * 109.47041 * 30.00306 * 13 12 10 42 42 H 1.09002 * 109.47278 * 30.00038 * 14 12 10 43 43 H 1.09006 * 109.46998 * 149.99560 * 14 12 10 44 44 H 0.96995 * 119.99737 * 180.02562 * 18 17 15 45 45 H 1.08995 * 109.47080 * 59.99849 * 25 23 7 46 46 H 1.08998 * 109.46779 * 180.02562 * 25 23 7 47 47 H 1.09002 * 109.46798 * 300.00197 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8945 1.0272 0.0000 4 6 2.0413 -0.7239 -1.2487 5 6 3.5712 -0.7720 -1.2106 6 6 4.0229 -1.4731 0.0726 7 7 3.5092 -0.7421 1.2380 8 6 4.0372 -1.3060 2.4876 9 6 5.5424 -1.5406 2.3453 10 6 6.0840 -2.1184 3.6275 11 8 5.3395 -2.3221 4.5630 12 7 7.3957 -2.4089 3.7344 13 6 8.2949 -2.1635 2.6042 14 6 7.9224 -2.9701 4.9810 15 6 8.3540 -1.8508 5.8929 16 1 8.2464 -0.8240 5.5759 17 6 8.8853 -2.1374 7.1325 18 7 9.2615 -1.1605 7.9286 19 14 9.0709 -3.9134 7.6812 20 1 10.4032 -4.4227 7.2676 21 1 8.9486 -3.9902 9.1591 22 1 8.0084 -4.7392 7.0529 23 6 2.0409 -0.7235 1.2481 24 1 1.6905 -0.2023 2.1389 25 6 1.5128 -2.1595 1.2567 26 1 -0.3633 0.5123 0.8908 27 1 -0.3632 0.5154 -0.8892 28 1 -0.3633 -1.0276 -0.0018 29 1 1.6453 -1.7391 -1.2690 30 1 1.7158 -0.1870 -2.1398 31 1 3.9396 -1.3235 -2.0756 32 1 3.9679 0.2431 -1.2303 33 1 5.1121 -1.4963 0.1096 34 1 3.6375 -2.4925 0.0844 35 1 3.5399 -2.2529 2.6975 36 1 3.8537 -0.6100 3.3062 37 1 6.0395 -0.5936 2.1355 38 1 5.7258 -2.2365 1.5268 39 1 8.3364 -3.0514 1.9733 40 1 9.2935 -1.9358 2.9771 41 1 7.9239 -1.3205 2.0211 42 1 7.1468 -3.5591 5.4706 43 1 8.7777 -3.6085 4.7592 44 1 9.6357 -1.3622 8.8004 45 1 1.8759 -2.6747 2.1459 46 1 0.4229 -2.1457 1.2638 47 1 1.8636 -2.6808 0.3661 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050564780.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:46 Heat of formation + Delta-G solvation = -38.226648 kcal Electronic energy + Delta-G solvation = -23195.481482 eV Core-core repulsion = 19991.989735 eV Total energy + Delta-G solvation = -3203.491747 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.19464 -38.92111 -35.20145 -34.73174 -32.63889 -32.54818 -30.85649 -28.65550 -27.76243 -26.42906 -25.89977 -24.42854 -22.54488 -22.32577 -20.64703 -18.50182 -18.34938 -16.95743 -16.85759 -15.97055 -15.60511 -15.37880 -15.02868 -14.71612 -14.36425 -14.20285 -13.82927 -13.28516 -13.11110 -12.97756 -12.80600 -12.53504 -12.44217 -12.26937 -12.12594 -11.92738 -11.76443 -11.67600 -11.61060 -11.28923 -11.11738 -10.91306 -10.87674 -10.58100 -10.49463 -10.31769 -10.19594 -10.09177 -9.52949 -8.97305 -8.58133 -8.23512 -7.68446 -6.07394 -4.06030 3.27506 3.35626 3.37243 3.40369 3.65593 4.07325 4.40859 4.48420 4.64966 4.70176 4.90337 5.07331 5.13391 5.15855 5.18794 5.25846 5.26480 5.31387 5.35552 5.38964 5.49667 5.56847 5.58237 5.62341 5.65510 5.78112 5.79794 5.85532 5.86344 5.93299 5.94873 6.02944 6.11069 6.15474 6.18702 6.25549 6.37161 6.67704 6.98319 7.09547 7.11848 7.35564 7.62712 8.26887 8.48727 8.94645 9.01114 9.52959 11.06096 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033504 B = 0.003331 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.528589 B = 8403.694325 C = 8702.690735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.083 4.083 3 H 0.077 0.923 4 C -0.117 4.117 5 C -0.116 4.116 6 C 0.041 3.959 7 N -0.532 5.532 8 C 0.069 3.931 9 C -0.141 4.141 10 C 0.507 3.493 11 O -0.543 6.543 12 N -0.599 5.599 13 C 0.083 3.917 14 C 0.215 3.785 15 C -0.528 4.528 16 H 0.074 0.926 17 C 0.071 3.929 18 N -0.898 5.898 19 Si 0.875 3.125 20 H -0.275 1.275 21 H -0.284 1.284 22 H -0.264 1.264 23 C 0.087 3.913 24 H 0.082 0.918 25 C -0.193 4.193 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.036 0.964 35 H 0.046 0.954 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.044 0.956 40 H 0.075 0.925 41 H 0.061 0.939 42 H 0.040 0.960 43 H 0.024 0.976 44 H 0.264 0.736 45 H 0.059 0.941 46 H 0.062 0.938 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.015 -0.548 -20.803 24.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.102 4.102 3 H 0.096 0.904 4 C -0.154 4.154 5 C -0.154 4.154 6 C -0.086 4.086 7 N -0.256 5.256 8 C -0.058 4.058 9 C -0.181 4.181 10 C 0.294 3.706 11 O -0.421 6.421 12 N -0.331 5.331 13 C -0.061 4.061 14 C 0.094 3.906 15 C -0.567 4.567 16 H 0.092 0.908 17 C -0.131 4.131 18 N -0.536 5.536 19 Si 0.702 3.298 20 H -0.201 1.201 21 H -0.209 1.209 22 H -0.189 1.189 23 C -0.022 4.022 24 H 0.100 0.900 25 C -0.252 4.252 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.103 0.897 37 H 0.115 0.885 38 H 0.105 0.895 39 H 0.062 0.938 40 H 0.094 0.906 41 H 0.080 0.920 42 H 0.058 0.942 43 H 0.042 0.958 44 H 0.074 0.926 45 H 0.078 0.922 46 H 0.081 0.919 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.135 -0.143 -20.143 24.047 hybrid contribution 0.099 -1.629 0.487 1.703 sum -13.036 -1.772 -19.655 23.652 Atomic orbital electron populations 1.21884 0.95207 1.01870 1.01676 1.21144 0.94911 1.00039 0.94058 0.90428 1.21674 0.95789 1.00498 0.97485 1.21576 0.95671 1.01572 0.96576 1.22260 1.00395 0.95519 0.90462 1.62232 1.07263 1.53812 1.02271 1.21878 0.93039 0.99461 0.91465 1.21802 0.96870 1.02596 0.96813 1.20327 0.82364 0.78873 0.89056 1.90663 1.57313 1.53526 1.40583 1.47842 1.07028 1.62848 1.15413 1.21666 0.95777 0.99673 0.88967 1.19655 0.94195 0.94981 0.81732 1.21339 1.41080 0.94078 1.00169 0.90765 1.24866 0.94850 0.97193 0.96163 1.69899 1.42498 1.31577 1.09668 0.86855 0.78864 0.85667 0.78403 1.20111 1.20934 1.18869 1.21643 0.87055 0.94986 0.98501 0.89987 1.22572 1.01790 0.98506 1.02283 0.92564 0.92720 0.92482 0.92103 0.92145 0.91830 0.91137 0.90180 0.94574 0.93602 0.89727 0.88512 0.89544 0.93777 0.90606 0.92019 0.94169 0.95759 0.92573 0.92180 0.91870 0.92077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 8.82 37.16 0.33 -0.77 16 2 C -0.08 -0.72 2.66 -90.53 -0.24 -0.97 16 3 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 4 C -0.12 -0.94 4.98 -26.61 -0.13 -1.07 16 5 C -0.12 -0.99 6.09 -26.65 -0.16 -1.15 16 6 C 0.04 0.42 4.55 -3.83 -0.02 0.40 16 7 N -0.53 -6.30 4.75 -226.68 -1.08 -7.37 16 8 C 0.07 0.99 4.44 -3.82 -0.02 0.98 16 9 C -0.14 -2.06 3.50 -27.88 -0.10 -2.16 16 10 C 0.51 10.39 7.67 -10.98 -0.08 10.31 16 11 O -0.54 -13.47 15.56 5.56 0.09 -13.38 16 12 N -0.60 -12.49 2.86 -182.95 -0.52 -13.01 16 13 C 0.08 1.28 10.24 59.85 0.61 1.89 16 14 C 0.22 5.35 4.23 -5.20 -0.02 5.33 16 15 C -0.53 -15.42 9.94 -34.45 -0.34 -15.76 16 16 H 0.07 2.38 8.06 -52.49 -0.42 1.95 16 17 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 18 N -0.90 -28.02 13.96 55.43 0.77 -27.24 16 19 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 23 C 0.09 0.91 2.47 -67.72 -0.17 0.75 16 24 H 0.08 0.92 8.12 -51.93 -0.42 0.50 16 25 C -0.19 -1.93 7.83 37.16 0.29 -1.64 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.41 6.41 -51.93 -0.33 0.08 16 29 H 0.06 0.49 6.56 -51.93 -0.34 0.15 16 30 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.79 5.81 -51.93 -0.30 0.49 16 34 H 0.04 0.37 6.19 -51.93 -0.32 0.05 16 35 H 0.05 0.70 6.03 -51.93 -0.31 0.39 16 36 H 0.08 1.38 8.10 -51.93 -0.42 0.96 16 37 H 0.10 1.34 7.40 -51.93 -0.38 0.96 16 38 H 0.09 1.06 6.17 -51.93 -0.32 0.74 16 39 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.08 1.21 8.07 -51.93 -0.42 0.80 16 41 H 0.06 0.79 6.44 -51.93 -0.33 0.45 16 42 H 0.04 1.08 6.48 -51.93 -0.34 0.74 16 43 H 0.02 0.57 7.50 -51.93 -0.39 0.18 16 44 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 45 H 0.06 0.69 6.36 -51.93 -0.33 0.36 16 46 H 0.06 0.55 6.41 -51.93 -0.33 0.22 16 47 H 0.06 0.59 4.80 -51.93 -0.25 0.34 16 LS Contribution 348.46 15.07 5.25 5.25 Total: -1.00 -33.59 348.46 -8.40 -41.99 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -8.10 Total: -1.49 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: -0.15 Total: -1.85 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: -0.83 Total: -47.63 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: 0.09 Total: -13.38 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.59 -8.40 -41.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050564780.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.766 kcal (2) G-P(sol) polarization free energy of solvation -33.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds