Wall clock time and date at job start Tue Mar 31 2020 06:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.08996 * 109.53226 * 2 1 4 4 C 1.53117 * 109.50425 * 239.89894 * 2 1 3 5 5 C 1.53113 * 109.15997 * 182.40462 * 4 2 1 6 6 C 1.53044 * 109.27660 * 57.65963 * 5 4 2 7 7 N 1.46847 * 109.51991 * 300.81630 * 6 5 4 8 8 C 1.46906 * 110.99629 * 185.83788 * 7 6 5 9 9 C 1.53000 * 109.46893 * 45.79738 * 8 7 6 10 10 C 1.50703 * 109.46653 * 179.97438 * 9 8 7 11 11 O 1.21279 * 120.00049 * 359.97438 * 10 9 8 12 12 N 1.34779 * 119.99541 * 179.97438 * 10 9 8 13 13 C 1.46499 * 120.00212 * 359.97438 * 12 10 9 14 14 C 1.46502 * 119.99726 * 179.97438 * 12 10 9 15 15 C 1.50691 * 109.47318 * 269.99867 * 14 12 10 16 16 H 1.08001 * 119.99896 * 0.02562 * 15 14 12 17 17 C 1.37874 * 120.00413 * 179.97438 * 15 14 12 18 18 N 1.31517 * 120.00255 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 119.99824 * 0.02562 * 17 15 14 20 20 H 1.48507 * 109.47024 * 89.99663 * 19 17 15 21 21 H 1.48499 * 109.47038 * 209.99658 * 19 17 15 22 22 H 1.48504 * 109.47057 * 329.99923 * 19 17 15 23 23 C 1.46853 * 111.19769 * 61.74579 * 7 6 5 24 24 H 1.08993 * 109.46036 * 178.23911 * 23 7 6 25 25 C 1.53004 * 109.46235 * 58.25936 * 23 7 6 26 26 H 1.08996 * 109.47085 * 299.90558 * 1 2 3 27 27 H 1.09004 * 109.46492 * 59.90370 * 1 2 3 28 28 H 1.08999 * 109.47211 * 179.89947 * 1 2 3 29 29 H 1.08998 * 109.52584 * 302.31517 * 4 2 1 30 30 H 1.09008 * 109.51940 * 62.50275 * 4 2 1 31 31 H 1.08998 * 109.50378 * 177.59587 * 5 4 2 32 32 H 1.08996 * 109.50613 * 297.67983 * 5 4 2 33 33 H 1.09001 * 109.46138 * 180.80490 * 6 5 4 34 34 H 1.08992 * 109.46162 * 60.83473 * 6 5 4 35 35 H 1.08994 * 109.47004 * 285.78840 * 8 7 6 36 36 H 1.09007 * 109.46353 * 165.79101 * 8 7 6 37 37 H 1.08996 * 109.47332 * 59.99971 * 9 8 7 38 38 H 1.08996 * 109.46646 * 299.99107 * 9 8 7 39 39 H 1.09002 * 109.47391 * 270.00122 * 13 12 10 40 40 H 1.09001 * 109.46813 * 150.00179 * 13 12 10 41 41 H 1.09004 * 109.47041 * 30.00306 * 13 12 10 42 42 H 1.09002 * 109.47278 * 30.00038 * 14 12 10 43 43 H 1.09006 * 109.46998 * 149.99560 * 14 12 10 44 44 H 0.96995 * 119.99737 * 180.02562 * 18 17 15 45 45 H 1.08995 * 109.47080 * 59.99849 * 25 23 7 46 46 H 1.08998 * 109.46779 * 180.02562 * 25 23 7 47 47 H 1.09002 * 109.46798 * 300.00197 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8945 1.0272 0.0000 4 6 2.0413 -0.7239 -1.2487 5 6 3.5712 -0.7720 -1.2106 6 6 4.0229 -1.4731 0.0726 7 7 3.5092 -0.7421 1.2380 8 6 4.0372 -1.3060 2.4876 9 6 5.5424 -1.5406 2.3453 10 6 6.0840 -2.1184 3.6275 11 8 5.3395 -2.3221 4.5630 12 7 7.3957 -2.4089 3.7344 13 6 8.2949 -2.1635 2.6042 14 6 7.9224 -2.9701 4.9810 15 6 8.3540 -1.8508 5.8929 16 1 8.2464 -0.8240 5.5759 17 6 8.8853 -2.1374 7.1325 18 7 9.2615 -1.1605 7.9286 19 14 9.0709 -3.9134 7.6812 20 1 10.4032 -4.4227 7.2676 21 1 8.9486 -3.9902 9.1591 22 1 8.0084 -4.7392 7.0529 23 6 2.0409 -0.7235 1.2481 24 1 1.6905 -0.2023 2.1389 25 6 1.5128 -2.1595 1.2567 26 1 -0.3633 0.5123 0.8908 27 1 -0.3632 0.5154 -0.8892 28 1 -0.3633 -1.0276 -0.0018 29 1 1.6453 -1.7391 -1.2690 30 1 1.7158 -0.1870 -2.1398 31 1 3.9396 -1.3235 -2.0756 32 1 3.9679 0.2431 -1.2303 33 1 5.1121 -1.4963 0.1096 34 1 3.6375 -2.4925 0.0844 35 1 3.5399 -2.2529 2.6975 36 1 3.8537 -0.6100 3.3062 37 1 6.0395 -0.5936 2.1355 38 1 5.7258 -2.2365 1.5268 39 1 8.3364 -3.0514 1.9733 40 1 9.2935 -1.9358 2.9771 41 1 7.9239 -1.3205 2.0211 42 1 7.1468 -3.5591 5.4706 43 1 8.7777 -3.6085 4.7592 44 1 9.6357 -1.3622 8.8004 45 1 1.8759 -2.6747 2.1459 46 1 0.4229 -2.1457 1.2638 47 1 1.8636 -2.6808 0.3661 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050564780.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:45 Heat of formation + Delta-G solvation = -61.321256 kcal Electronic energy + Delta-G solvation = -23196.482939 eV Core-core repulsion = 19991.989735 eV Total energy + Delta-G solvation = -3204.493204 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.20275 -40.36972 -36.72084 -35.90264 -34.70555 -33.36051 -32.10826 -30.29962 -28.81437 -27.35589 -27.14440 -25.69912 -24.02281 -23.25398 -21.77700 -19.86890 -19.27328 -19.16172 -18.18242 -17.21120 -16.95907 -16.60400 -16.36111 -16.04820 -15.53713 -15.20370 -14.93044 -14.73006 -14.38492 -14.09904 -13.79087 -13.70581 -13.65264 -13.63404 -13.36644 -13.19361 -13.13376 -12.80284 -12.59369 -12.46878 -12.42266 -12.24368 -12.12438 -12.01802 -11.77142 -11.60081 -11.33708 -11.07972 -10.94930 -10.83407 -10.65875 -9.40547 -9.17891 -8.35397 -6.40807 1.30641 1.35559 1.46425 1.77957 2.27635 2.30525 2.95512 2.99318 3.73309 3.74845 3.90818 3.96489 4.06593 4.13407 4.22885 4.36357 4.36792 4.44523 4.48985 4.53016 4.62484 4.65548 4.70910 4.77250 4.81574 4.86448 4.88270 4.95776 4.97970 5.01396 5.03450 5.06884 5.08532 5.19802 5.20258 5.29196 5.40281 5.44924 5.45960 5.60987 5.64369 6.12179 6.22198 6.24220 6.60583 6.68861 7.19994 7.40799 8.81807 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033504 B = 0.003331 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.528589 B = 8403.694325 C = 8702.690735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.078 4.078 3 H 0.069 0.931 4 C -0.115 4.115 5 C -0.113 4.113 6 C 0.036 3.964 7 N -0.535 5.535 8 C 0.077 3.923 9 C -0.121 4.121 10 C 0.496 3.504 11 O -0.598 6.598 12 N -0.609 5.609 13 C 0.076 3.924 14 C 0.223 3.777 15 C -0.538 4.538 16 H 0.027 0.973 17 C 0.009 3.991 18 N -0.946 5.946 19 Si 0.951 3.049 20 H -0.249 1.249 21 H -0.282 1.282 22 H -0.257 1.257 23 C 0.082 3.918 24 H 0.065 0.935 25 C -0.186 4.186 26 H 0.051 0.949 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.037 0.963 35 H 0.033 0.967 36 H 0.054 0.946 37 H 0.111 0.889 38 H 0.122 0.878 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.090 0.910 42 H 0.018 0.982 43 H 0.050 0.950 44 H 0.269 0.731 45 H 0.038 0.962 46 H 0.075 0.925 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.998 -2.111 -23.740 27.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.097 4.097 3 H 0.087 0.913 4 C -0.152 4.152 5 C -0.150 4.150 6 C -0.091 4.091 7 N -0.258 5.258 8 C -0.051 4.051 9 C -0.161 4.161 10 C 0.285 3.715 11 O -0.480 6.480 12 N -0.340 5.340 13 C -0.066 4.066 14 C 0.100 3.900 15 C -0.577 4.577 16 H 0.045 0.955 17 C -0.189 4.189 18 N -0.586 5.586 19 Si 0.773 3.227 20 H -0.173 1.173 21 H -0.207 1.207 22 H -0.181 1.181 23 C -0.027 4.027 24 H 0.084 0.916 25 C -0.244 4.244 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.084 0.916 33 H 0.105 0.895 34 H 0.055 0.945 35 H 0.051 0.949 36 H 0.073 0.927 37 H 0.129 0.871 38 H 0.140 0.860 39 H 0.100 0.900 40 H 0.084 0.916 41 H 0.108 0.892 42 H 0.036 0.964 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.057 0.943 46 H 0.094 0.906 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.098 -1.692 -23.146 26.649 hybrid contribution 0.067 -1.024 1.375 1.716 sum -13.031 -2.717 -21.771 25.518 Atomic orbital electron populations 1.21862 0.94092 1.02264 1.02124 1.21109 0.95806 0.99319 0.93492 0.91290 1.21677 0.95521 1.00693 0.97345 1.21571 0.95938 1.01362 0.96155 1.22398 1.00810 0.95590 0.90297 1.62245 1.08110 1.53819 1.01670 1.21650 0.93129 0.98123 0.92182 1.21738 0.96511 1.03505 0.94345 1.21369 0.81933 0.77871 0.90360 1.90629 1.58686 1.55713 1.42961 1.47987 1.08073 1.62438 1.15461 1.21997 0.94228 1.02674 0.87688 1.19326 0.94166 0.93544 0.82960 1.21574 1.41209 0.93322 1.01555 0.95473 1.25893 0.94278 1.02607 0.96087 1.70057 1.43754 1.34445 1.10364 0.85673 0.80128 0.79100 0.77811 1.17312 1.20722 1.18062 1.21720 0.86405 0.95497 0.99036 0.91628 1.22502 1.02540 0.97817 1.01572 0.92943 0.91500 0.92084 0.91771 0.90767 0.89959 0.91573 0.89467 0.94498 0.94883 0.92741 0.87092 0.85991 0.89997 0.91628 0.89170 0.96363 0.93235 0.92228 0.94271 0.90631 0.91259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 8.82 71.99 0.64 -1.27 16 2 C -0.08 -1.25 2.66 -10.74 -0.03 -1.28 16 3 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 4 C -0.11 -1.52 4.98 30.67 0.15 -1.37 16 5 C -0.11 -1.57 6.09 30.65 0.19 -1.38 16 6 C 0.04 0.64 4.55 86.33 0.39 1.03 16 7 N -0.53 -12.18 4.75 -871.08 -4.14 -16.32 16 8 C 0.08 2.25 4.44 86.30 0.38 2.64 16 9 C -0.12 -3.39 3.50 29.85 0.10 -3.29 16 10 C 0.50 20.40 7.67 87.66 0.67 21.08 16 11 O -0.60 -30.88 15.56 -3.02 -0.05 -30.93 16 12 N -0.61 -24.98 2.86 -851.12 -2.43 -27.41 16 13 C 0.08 2.13 10.24 127.77 1.31 3.44 16 14 C 0.22 11.07 4.23 85.63 0.36 11.43 16 15 C -0.54 -32.38 9.94 25.60 0.25 -32.13 16 16 H 0.03 1.83 8.06 -2.91 -0.02 1.80 16 17 C 0.01 0.55 5.47 84.65 0.46 1.02 16 18 N -0.95 -60.76 13.96 21.45 0.30 -60.46 16 19 Si 0.95 45.05 27.47 68.60 1.88 46.93 16 20 H -0.25 -10.72 7.11 99.48 0.71 -10.02 16 21 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 22 H -0.26 -11.76 6.54 99.48 0.65 -11.11 16 23 C 0.08 1.69 2.47 44.94 0.11 1.80 16 24 H 0.07 1.54 8.12 -2.39 -0.02 1.52 16 25 C -0.19 -3.57 7.83 71.98 0.56 -3.01 16 26 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 28 H 0.06 0.75 6.41 -2.39 -0.02 0.74 16 29 H 0.06 0.83 6.56 -2.39 -0.02 0.81 16 30 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.09 1.40 5.81 -2.39 -0.01 1.39 16 34 H 0.04 0.66 6.19 -2.39 -0.01 0.65 16 35 H 0.03 1.04 6.03 -2.39 -0.01 1.03 16 36 H 0.05 1.89 8.10 -2.38 -0.02 1.87 16 37 H 0.11 2.84 7.40 -2.39 -0.02 2.83 16 38 H 0.12 2.57 6.17 -2.39 -0.01 2.56 16 39 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.06 1.99 8.07 -2.39 -0.02 1.97 16 41 H 0.09 2.00 6.44 -2.38 -0.02 1.99 16 42 H 0.02 0.99 6.48 -2.39 -0.02 0.97 16 43 H 0.05 2.21 7.50 -2.38 -0.02 2.20 16 44 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 45 H 0.04 0.91 6.36 -2.39 -0.02 0.90 16 46 H 0.07 1.24 6.41 -2.39 -0.02 1.22 16 47 H 0.07 1.21 4.80 -2.39 -0.01 1.20 16 Total: -1.00 -77.28 348.46 2.01 -75.28 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 0.88 Total: 14.20 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: 5.56 Total: -1.28 kcal Atomic # 7 Polarization: -97.92 SS G_CDS: -6.27 Total: -104.19 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -0.05 Total: -30.93 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.88 Total: 46.93 kcal Total: -77.28 2.01 -75.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050564780.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.955 kcal (2) G-P(sol) polarization free energy of solvation -77.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds