Wall clock time and date at job start Tue Mar 31 2020 06:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.46563 * 2 1 4 4 C 1.53041 * 109.46523 * 240.02346 * 2 1 3 5 5 H 1.08996 * 109.50165 * 300.74973 * 4 2 1 6 6 C 1.52998 * 109.53547 * 60.85278 * 4 2 1 7 7 C 1.53120 * 109.27703 * 180.81459 * 4 2 1 8 8 C 1.53119 * 109.16202 * 57.65829 * 7 4 2 9 9 C 1.53044 * 109.27589 * 302.34077 * 8 7 4 10 10 N 1.46847 * 109.51335 * 59.18419 * 9 8 7 11 11 C 1.46899 * 110.99862 * 174.15436 * 10 9 8 12 12 C 1.52999 * 109.47036 * 66.05037 * 11 10 9 13 13 C 1.50700 * 109.46936 * 179.97438 * 12 11 10 14 14 O 1.21276 * 120.00279 * 359.97438 * 13 12 11 15 15 N 1.34779 * 119.99733 * 179.97438 * 13 12 11 16 16 C 1.46500 * 120.00320 * 0.02562 * 15 13 12 17 17 C 1.46507 * 119.99923 * 179.97438 * 15 13 12 18 18 C 1.50690 * 109.46820 * 90.00038 * 17 15 13 19 19 H 1.08003 * 120.00669 * 0.02562 * 18 17 15 20 20 C 1.37886 * 119.99672 * 179.97438 * 18 17 15 21 21 N 1.31513 * 119.99887 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99909 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46913 * 60.00125 * 22 20 18 24 24 H 1.48504 * 109.47187 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.47208 * 300.00284 * 22 20 18 26 26 H 1.09001 * 109.47072 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47111 * 299.97841 * 1 2 3 28 28 H 1.08999 * 109.46991 * 59.97760 * 1 2 3 29 29 H 1.09004 * 109.47022 * 179.82071 * 6 4 2 30 30 H 1.08993 * 109.47496 * 299.82367 * 6 4 2 31 31 H 1.09008 * 109.46952 * 59.82612 * 6 4 2 32 32 H 1.08993 * 109.52850 * 297.74913 * 7 4 2 33 33 H 1.09003 * 109.57279 * 177.58700 * 7 4 2 34 34 H 1.09000 * 109.50507 * 182.40742 * 8 7 4 35 35 H 1.08996 * 109.50916 * 62.28058 * 8 7 4 36 36 H 1.09002 * 109.46396 * 179.19729 * 9 8 7 37 37 H 1.08994 * 109.46485 * 299.17654 * 9 8 7 38 38 H 1.09004 * 109.46859 * 186.04870 * 11 10 9 39 39 H 1.08996 * 109.47621 * 306.04495 * 11 10 9 40 40 H 1.08999 * 109.46741 * 299.99794 * 12 11 10 41 41 H 1.08997 * 109.47402 * 59.99850 * 12 11 10 42 42 H 1.08999 * 109.46782 * 89.99551 * 16 15 13 43 43 H 1.08998 * 109.47268 * 209.99719 * 16 15 13 44 44 H 1.08998 * 109.46858 * 330.00395 * 16 15 13 45 45 H 1.08998 * 109.46935 * 210.00017 * 17 15 13 46 46 H 1.09000 * 109.46643 * 330.00348 * 17 15 13 47 47 H 0.97001 * 119.99936 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7210 -1.2499 5 1 1.6659 -1.7447 -1.2575 6 6 1.5483 0.0120 -2.4997 7 6 3.5710 -0.7363 -1.2353 8 6 4.0546 -1.4191 0.0470 9 6 3.4862 -0.6779 1.2593 10 7 2.0191 -0.6920 1.1993 11 6 1.4368 -0.1109 2.4164 12 6 1.7839 1.3775 2.4873 13 6 1.1861 1.9738 3.7356 14 8 0.5451 1.2770 4.4936 15 7 1.3638 3.2814 4.0096 16 6 2.1375 4.1232 3.0938 17 6 0.7821 3.8612 5.2229 18 6 1.7688 3.7485 6.3562 19 1 2.7329 3.2911 6.1896 20 6 1.4411 4.2302 7.6060 21 7 0.2673 4.7876 7.8088 22 14 2.6639 4.0898 9.0112 23 1 3.9078 4.8208 8.6597 24 1 2.0744 4.6776 10.2409 25 1 2.9813 2.6590 9.2501 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5135 0.8901 28 1 -0.3633 0.5142 -0.8898 29 1 1.9147 -0.5006 -3.3892 30 1 0.4584 0.0226 -2.5096 31 1 1.9216 1.0361 -2.4908 32 1 3.9459 0.2867 -1.2669 33 1 3.9389 -1.2860 -2.1017 34 1 5.1437 -1.3951 0.0836 35 1 3.7122 -2.4538 0.0598 36 1 3.8171 -1.1701 2.1739 37 1 3.8400 0.3530 1.2534 38 1 0.3536 -0.2307 2.3939 39 1 1.8406 -0.6202 3.2914 40 1 2.8671 1.4973 2.5098 41 1 1.3801 1.8869 1.6124 42 1 1.4710 4.5572 2.3484 43 1 2.6227 4.9212 3.6559 44 1 2.8945 3.5176 2.5955 45 1 0.5484 4.9113 5.0477 46 1 -0.1305 3.3239 5.4808 47 1 0.0367 5.1261 8.6881 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050564781.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:49 Heat of formation + Delta-G solvation = -48.699264 kcal Electronic energy + Delta-G solvation = -23404.051346 eV Core-core repulsion = 20200.105473 eV Total energy + Delta-G solvation = -3203.945874 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.07892 -38.70013 -35.11315 -34.64024 -33.25513 -32.61374 -30.31388 -28.35098 -27.57643 -26.18649 -25.78231 -24.59181 -22.62302 -21.50339 -21.05026 -19.54972 -18.19771 -16.59238 -16.47865 -15.94898 -15.34802 -15.23753 -15.12869 -14.56201 -14.39116 -14.30706 -13.85126 -13.38777 -12.98666 -12.76830 -12.51986 -12.41181 -12.18176 -12.14905 -12.01938 -11.85849 -11.80481 -11.70551 -11.66327 -11.17909 -11.10728 -10.91108 -10.82168 -10.57512 -10.55311 -10.37162 -10.16800 -10.12030 -9.64287 -8.90211 -8.43391 -8.25505 -7.63505 -6.04040 -4.08984 3.31644 3.36151 3.37881 3.46152 3.78487 4.05700 4.45074 4.54607 4.60606 4.70624 4.91799 5.14194 5.18600 5.20597 5.24377 5.25940 5.31214 5.33168 5.37368 5.43838 5.54288 5.54988 5.61869 5.65759 5.75076 5.78940 5.82725 5.85646 5.90206 5.93573 5.99209 6.08195 6.10784 6.15939 6.19345 6.29734 6.43387 7.04005 7.12253 7.14708 7.44770 7.54758 7.92193 8.23923 8.43114 8.90290 9.11104 9.56077 11.04023 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028596 B = 0.003591 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.915898 B = 7794.961161 C = 8101.628998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.083 3.917 3 H 0.043 0.957 4 C -0.084 4.084 5 H 0.077 0.923 6 C -0.148 4.148 7 C -0.116 4.116 8 C -0.116 4.116 9 C 0.050 3.950 10 N -0.531 5.531 11 C 0.070 3.930 12 C -0.177 4.177 13 C 0.507 3.493 14 O -0.542 6.542 15 N -0.604 5.604 16 C 0.085 3.915 17 C 0.245 3.755 18 C -0.527 4.527 19 H 0.056 0.944 20 C 0.061 3.939 21 N -0.895 5.895 22 Si 0.898 3.102 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.276 1.276 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.035 0.965 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.043 0.957 43 H 0.073 0.927 44 H 0.054 0.946 45 H 0.031 0.969 46 H 0.043 0.957 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.687 -8.376 -20.691 23.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.025 4.025 3 H 0.061 0.939 4 C -0.103 4.103 5 H 0.095 0.905 6 C -0.206 4.206 7 C -0.154 4.154 8 C -0.154 4.154 9 C -0.078 4.078 10 N -0.254 5.254 11 C -0.058 4.058 12 C -0.219 4.219 13 C 0.293 3.707 14 O -0.420 6.420 15 N -0.336 5.336 16 C -0.059 4.059 17 C 0.126 3.874 18 C -0.566 4.566 19 H 0.074 0.926 20 C -0.141 4.141 21 N -0.534 5.534 22 Si 0.726 3.274 23 H -0.203 1.203 24 H -0.211 1.211 25 H -0.201 1.201 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.053 0.947 38 H 0.106 0.894 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.061 0.939 43 H 0.092 0.908 44 H 0.073 0.927 45 H 0.049 0.951 46 H 0.062 0.938 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.075 -9.131 -20.164 22.709 hybrid contribution 1.073 1.063 0.892 1.754 sum 6.148 -8.068 -19.272 21.779 Atomic orbital electron populations 1.21997 0.94369 1.02661 1.02006 1.21648 0.95471 0.95515 0.89914 0.93934 1.21185 0.95116 1.00281 0.93692 0.90456 1.21882 1.01403 1.00284 0.97049 1.21651 0.95417 1.00623 0.97709 1.21584 0.99536 1.00247 0.94062 1.22123 0.87798 0.98976 0.98873 1.62255 1.06864 1.54225 1.02040 1.22027 1.01394 0.90550 0.91866 1.22371 1.02148 0.99402 0.97956 1.20233 0.81302 0.82385 0.86810 1.90667 1.41383 1.59655 1.50264 1.48187 1.52182 1.08461 1.24814 1.21602 0.95081 0.95772 0.93437 1.19271 0.94809 0.93477 0.79847 1.21395 1.01560 1.39082 0.94554 0.92600 1.24942 0.95499 0.95093 0.98578 1.69923 1.20519 1.39708 1.23256 0.86554 0.81050 0.78482 0.81311 1.20271 1.21133 1.20150 0.91810 0.92002 0.92122 0.92729 0.92192 0.92842 0.92341 0.92017 0.91736 0.91188 0.90617 0.94727 0.89408 0.89901 0.89745 0.89705 0.93891 0.90818 0.92724 0.95126 0.93848 0.92650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 8.35 37.15 0.31 -1.28 16 2 C 0.08 0.87 1.36 -67.72 -0.09 0.78 16 3 H 0.04 0.47 6.61 -51.93 -0.34 0.13 16 4 C -0.08 -0.74 2.40 -90.54 -0.22 -0.96 16 5 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 6 C -0.15 -1.11 8.86 37.16 0.33 -0.78 16 7 C -0.12 -0.97 5.29 -26.61 -0.14 -1.11 16 8 C -0.12 -1.04 6.09 -26.65 -0.16 -1.20 16 9 C 0.05 0.54 5.05 -3.83 -0.02 0.52 16 10 N -0.53 -6.36 4.69 -226.69 -1.06 -7.42 16 11 C 0.07 1.01 4.08 -3.83 -0.02 0.99 16 12 C -0.18 -2.65 3.45 -27.88 -0.10 -2.75 16 13 C 0.51 10.62 7.67 -10.98 -0.08 10.54 16 14 O -0.54 -13.71 15.56 5.56 0.09 -13.62 16 15 N -0.60 -13.05 2.86 -182.96 -0.52 -13.58 16 16 C 0.09 1.38 10.24 59.85 0.61 2.00 16 17 C 0.25 6.54 5.16 -5.19 -0.03 6.51 16 18 C -0.53 -15.20 9.39 -34.44 -0.32 -15.52 16 19 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 20 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 21 N -0.90 -26.91 13.29 55.43 0.74 -26.18 16 22 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.74 6.07 -51.93 -0.32 0.42 16 28 H 0.06 0.54 6.46 -51.93 -0.34 0.20 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.44 6.46 -51.93 -0.34 0.10 16 31 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.84 8.06 -51.93 -0.42 0.42 16 37 H 0.03 0.38 6.75 -51.93 -0.35 0.03 16 38 H 0.09 1.35 6.28 -51.93 -0.33 1.03 16 39 H 0.08 1.32 8.02 -51.93 -0.42 0.91 16 40 H 0.08 1.18 5.94 -51.93 -0.31 0.87 16 41 H 0.08 1.13 6.20 -51.93 -0.32 0.81 16 42 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 44 H 0.05 0.73 6.44 -51.93 -0.33 0.40 16 45 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 46 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 47 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 356.37 15.07 5.37 5.37 Total: -1.00 -32.38 356.37 -8.82 -41.20 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -8.38 Total: -2.22 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -0.02 Total: -0.60 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: -0.85 Total: -47.17 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: 0.09 Total: -13.62 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.38 -8.82 -41.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050564781.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.504 kcal (2) G-P(sol) polarization free energy of solvation -32.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds