Wall clock time and date at job start Tue Mar 31 2020 06:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.46563 * 2 1 4 4 C 1.53041 * 109.46523 * 240.02346 * 2 1 3 5 5 H 1.08996 * 109.50165 * 300.74973 * 4 2 1 6 6 C 1.52998 * 109.53547 * 60.85278 * 4 2 1 7 7 C 1.53120 * 109.27703 * 180.81459 * 4 2 1 8 8 C 1.53119 * 109.16202 * 57.65829 * 7 4 2 9 9 C 1.53044 * 109.27589 * 302.34077 * 8 7 4 10 10 N 1.46847 * 109.51335 * 59.18419 * 9 8 7 11 11 C 1.46899 * 110.99862 * 174.15436 * 10 9 8 12 12 C 1.52999 * 109.47036 * 66.05037 * 11 10 9 13 13 C 1.50700 * 109.46936 * 179.97438 * 12 11 10 14 14 O 1.21276 * 120.00279 * 359.97438 * 13 12 11 15 15 N 1.34779 * 119.99733 * 179.97438 * 13 12 11 16 16 C 1.46500 * 120.00320 * 0.02562 * 15 13 12 17 17 C 1.46507 * 119.99923 * 179.97438 * 15 13 12 18 18 C 1.50690 * 109.46820 * 90.00038 * 17 15 13 19 19 H 1.08003 * 120.00669 * 0.02562 * 18 17 15 20 20 C 1.37886 * 119.99672 * 179.97438 * 18 17 15 21 21 N 1.31513 * 119.99887 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99909 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46913 * 60.00125 * 22 20 18 24 24 H 1.48504 * 109.47187 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.47208 * 300.00284 * 22 20 18 26 26 H 1.09001 * 109.47072 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47111 * 299.97841 * 1 2 3 28 28 H 1.08999 * 109.46991 * 59.97760 * 1 2 3 29 29 H 1.09004 * 109.47022 * 179.82071 * 6 4 2 30 30 H 1.08993 * 109.47496 * 299.82367 * 6 4 2 31 31 H 1.09008 * 109.46952 * 59.82612 * 6 4 2 32 32 H 1.08993 * 109.52850 * 297.74913 * 7 4 2 33 33 H 1.09003 * 109.57279 * 177.58700 * 7 4 2 34 34 H 1.09000 * 109.50507 * 182.40742 * 8 7 4 35 35 H 1.08996 * 109.50916 * 62.28058 * 8 7 4 36 36 H 1.09002 * 109.46396 * 179.19729 * 9 8 7 37 37 H 1.08994 * 109.46485 * 299.17654 * 9 8 7 38 38 H 1.09004 * 109.46859 * 186.04870 * 11 10 9 39 39 H 1.08996 * 109.47621 * 306.04495 * 11 10 9 40 40 H 1.08999 * 109.46741 * 299.99794 * 12 11 10 41 41 H 1.08997 * 109.47402 * 59.99850 * 12 11 10 42 42 H 1.08999 * 109.46782 * 89.99551 * 16 15 13 43 43 H 1.08998 * 109.47268 * 209.99719 * 16 15 13 44 44 H 1.08998 * 109.46858 * 330.00395 * 16 15 13 45 45 H 1.08998 * 109.46935 * 210.00017 * 17 15 13 46 46 H 1.09000 * 109.46643 * 330.00348 * 17 15 13 47 47 H 0.97001 * 119.99936 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7210 -1.2499 5 1 1.6659 -1.7447 -1.2575 6 6 1.5483 0.0120 -2.4997 7 6 3.5710 -0.7363 -1.2353 8 6 4.0546 -1.4191 0.0470 9 6 3.4862 -0.6779 1.2593 10 7 2.0191 -0.6920 1.1993 11 6 1.4368 -0.1109 2.4164 12 6 1.7839 1.3775 2.4873 13 6 1.1861 1.9738 3.7356 14 8 0.5451 1.2770 4.4936 15 7 1.3638 3.2814 4.0096 16 6 2.1375 4.1232 3.0938 17 6 0.7821 3.8612 5.2229 18 6 1.7688 3.7485 6.3562 19 1 2.7329 3.2911 6.1896 20 6 1.4411 4.2302 7.6060 21 7 0.2673 4.7876 7.8088 22 14 2.6639 4.0898 9.0112 23 1 3.9078 4.8208 8.6597 24 1 2.0744 4.6776 10.2409 25 1 2.9813 2.6590 9.2501 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5135 0.8901 28 1 -0.3633 0.5142 -0.8898 29 1 1.9147 -0.5006 -3.3892 30 1 0.4584 0.0226 -2.5096 31 1 1.9216 1.0361 -2.4908 32 1 3.9459 0.2867 -1.2669 33 1 3.9389 -1.2860 -2.1017 34 1 5.1437 -1.3951 0.0836 35 1 3.7122 -2.4538 0.0598 36 1 3.8171 -1.1701 2.1739 37 1 3.8400 0.3530 1.2534 38 1 0.3536 -0.2307 2.3939 39 1 1.8406 -0.6202 3.2914 40 1 2.8671 1.4973 2.5098 41 1 1.3801 1.8869 1.6124 42 1 1.4710 4.5572 2.3484 43 1 2.6227 4.9212 3.6559 44 1 2.8945 3.5176 2.5955 45 1 0.5484 4.9113 5.0477 46 1 -0.1305 3.3239 5.4808 47 1 0.0367 5.1261 8.6881 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050564781.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:48 Heat of formation + Delta-G solvation = -69.596783 kcal Electronic energy + Delta-G solvation = -23404.957531 eV Core-core repulsion = 20200.105473 eV Total energy + Delta-G solvation = -3204.852058 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.19796 -40.13947 -36.68514 -35.82622 -34.74278 -34.01911 -31.60860 -29.71444 -28.87632 -27.36355 -26.89948 -25.95077 -24.37681 -22.27192 -21.97699 -20.64939 -19.60632 -18.72720 -17.99258 -17.13008 -17.04553 -16.41399 -16.18052 -16.14233 -15.54393 -15.12416 -15.02694 -14.61275 -14.23867 -14.00358 -13.74264 -13.69495 -13.48749 -13.43994 -13.24587 -13.05640 -12.98732 -12.79216 -12.75400 -12.59252 -12.51442 -12.45197 -12.21404 -11.97578 -11.75611 -11.60535 -11.46842 -11.09204 -10.92748 -10.66610 -10.63577 -9.45301 -9.22640 -8.24648 -6.40115 1.34827 1.39519 1.46829 1.79998 2.29037 2.43154 2.92202 3.04680 3.75966 3.79766 3.88188 3.92056 4.00181 4.08619 4.23954 4.30226 4.40027 4.43263 4.47432 4.60652 4.64834 4.68488 4.74421 4.76774 4.85673 4.89545 4.95440 4.98815 5.01785 5.04077 5.06738 5.14250 5.19391 5.20600 5.25884 5.32804 5.38338 5.50513 5.52993 5.60679 5.81122 6.03484 6.12661 6.25513 6.66418 6.75724 7.25501 7.45416 8.82358 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028596 B = 0.003591 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.915898 B = 7794.961161 C = 8101.628998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.080 3.920 3 H 0.045 0.955 4 C -0.080 4.080 5 H 0.069 0.931 6 C -0.145 4.145 7 C -0.114 4.114 8 C -0.112 4.112 9 C 0.045 3.955 10 N -0.533 5.533 11 C 0.079 3.921 12 C -0.154 4.154 13 C 0.497 3.503 14 O -0.596 6.596 15 N -0.612 5.612 16 C 0.080 3.920 17 C 0.259 3.741 18 C -0.546 4.546 19 H 0.053 0.947 20 C 0.007 3.993 21 N -0.929 5.929 22 Si 0.969 3.031 23 H -0.259 1.259 24 H -0.277 1.277 25 H -0.278 1.278 26 H 0.058 0.942 27 H 0.042 0.958 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.039 0.961 38 H 0.072 0.928 39 H 0.061 0.939 40 H 0.104 0.896 41 H 0.110 0.890 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.089 0.911 45 H 0.023 0.977 46 H -0.003 1.003 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.908 -8.273 -22.678 25.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.028 4.028 3 H 0.063 0.937 4 C -0.099 4.099 5 H 0.088 0.912 6 C -0.203 4.203 7 C -0.152 4.152 8 C -0.150 4.150 9 C -0.082 4.082 10 N -0.256 5.256 11 C -0.050 4.050 12 C -0.195 4.195 13 C 0.286 3.714 14 O -0.478 6.478 15 N -0.343 5.343 16 C -0.062 4.062 17 C 0.137 3.863 18 C -0.584 4.584 19 H 0.071 0.929 20 C -0.192 4.192 21 N -0.568 5.568 22 Si 0.793 3.207 23 H -0.184 1.184 24 H -0.202 1.202 25 H -0.203 1.203 26 H 0.077 0.923 27 H 0.061 0.939 28 H 0.096 0.904 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.057 0.943 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.122 0.878 41 H 0.128 0.872 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.108 0.892 45 H 0.041 0.959 46 H 0.015 0.985 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.327 -9.010 -22.206 25.059 hybrid contribution 0.336 1.016 1.461 1.811 sum 7.663 -7.994 -20.745 23.515 Atomic orbital electron populations 1.21982 0.94576 1.02371 1.01881 1.21763 0.95354 0.95728 0.89914 0.93672 1.21158 0.95666 0.99768 0.93325 0.91225 1.21856 1.01476 1.00351 0.96609 1.21653 0.94766 1.00974 0.97770 1.21565 1.00321 0.99662 0.93449 1.22221 0.86852 0.99459 0.99680 1.62274 1.07781 1.54097 1.01437 1.21805 1.00569 0.90137 0.92508 1.22274 1.02740 0.99313 0.95215 1.21273 0.80390 0.81764 0.88003 1.90635 1.43756 1.60896 1.52515 1.48232 1.52490 1.09481 1.24137 1.21896 0.95876 0.95547 0.92887 1.18744 0.93114 0.92404 0.81994 1.21676 1.01738 1.39288 0.95746 0.92923 1.25891 0.97461 0.94460 1.01392 1.70045 1.22341 1.40290 1.24130 0.85452 0.79053 0.78384 0.77834 1.18360 1.20203 1.20319 0.92260 0.93940 0.90363 0.91658 0.92129 0.92519 0.91944 0.90627 0.90270 0.91714 0.91424 0.94314 0.90946 0.92046 0.87751 0.87222 0.91190 0.91500 0.89219 0.95926 0.98505 0.92321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 8.35 71.98 0.60 -2.37 16 2 C 0.08 1.52 1.36 44.94 0.06 1.59 16 3 H 0.05 0.85 6.61 -2.38 -0.02 0.84 16 4 C -0.08 -1.22 2.40 -10.74 -0.03 -1.24 16 5 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 6 C -0.15 -1.74 8.86 71.98 0.64 -1.10 16 7 C -0.11 -1.54 5.29 30.67 0.16 -1.37 16 8 C -0.11 -1.72 6.09 30.65 0.19 -1.53 16 9 C 0.05 0.90 5.05 86.33 0.44 1.34 16 10 N -0.53 -12.16 4.69 -871.10 -4.09 -16.25 16 11 C 0.08 2.28 4.08 86.30 0.35 2.63 16 12 C -0.15 -4.42 3.45 29.85 0.10 -4.32 16 13 C 0.50 21.12 7.67 87.66 0.67 21.80 16 14 O -0.60 -31.66 15.56 -3.02 -0.05 -31.70 16 15 N -0.61 -26.59 2.86 -851.14 -2.43 -29.03 16 16 C 0.08 2.43 10.24 127.77 1.31 3.74 16 17 C 0.26 14.34 5.16 85.63 0.44 14.78 16 18 C -0.55 -32.14 9.39 25.60 0.24 -31.90 16 19 H 0.05 3.06 7.81 -2.91 -0.02 3.03 16 20 C 0.01 0.41 5.46 84.66 0.46 0.87 16 21 N -0.93 -57.02 13.29 21.45 0.28 -56.74 16 22 Si 0.97 45.41 29.54 68.60 2.03 47.44 16 23 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 24 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 25 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 26 H 0.06 1.20 8.14 -2.39 -0.02 1.19 16 27 H 0.04 1.00 6.07 -2.39 -0.01 0.98 16 28 H 0.08 1.24 6.46 -2.39 -0.02 1.23 16 29 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 30 H 0.06 0.72 6.46 -2.39 -0.02 0.70 16 31 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.07 1.44 8.06 -2.39 -0.02 1.42 16 37 H 0.04 0.74 6.75 -2.39 -0.02 0.72 16 38 H 0.07 2.32 6.28 -2.38 -0.01 2.30 16 39 H 0.06 2.03 8.02 -2.39 -0.02 2.01 16 40 H 0.10 2.63 5.94 -2.39 -0.01 2.61 16 41 H 0.11 2.64 6.20 -2.39 -0.01 2.63 16 42 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.07 2.13 8.07 -2.39 -0.02 2.11 16 44 H 0.09 2.09 6.44 -2.39 -0.02 2.07 16 45 H 0.02 1.27 8.07 -2.39 -0.02 1.25 16 46 H 0.00 -0.20 7.42 -2.39 -0.02 -0.22 16 47 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -73.07 356.37 2.31 -70.76 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 0.92 Total: 12.61 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: 5.64 Total: 2.90 kcal Atomic # 7 Polarization: -95.77 SS G_CDS: -6.23 Total: -102.01 kcal Atomic # 8 Polarization: -31.66 SS G_CDS: -0.05 Total: -31.70 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -73.07 2.31 -70.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050564781.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.165 kcal (2) G-P(sol) polarization free energy of solvation -73.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds