Wall clock time and date at job start Tue Mar 31 2020 06:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.52620 * 2 1 4 4 C 1.53116 * 109.52296 * 239.86939 * 2 1 3 5 5 C 1.53031 * 109.27969 * 182.44340 * 4 2 1 6 6 N 1.46850 * 109.52405 * 59.18125 * 5 4 2 7 7 C 1.46901 * 111.00165 * 174.16248 * 6 5 4 8 8 C 1.53002 * 109.47221 * 66.04280 * 7 6 5 9 9 C 1.50699 * 109.46948 * 180.02562 * 8 7 6 10 10 O 1.21274 * 120.00229 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99443 * 180.02562 * 9 8 7 12 12 C 1.46500 * 120.00571 * 359.97438 * 11 9 8 13 13 C 1.46500 * 119.99787 * 179.97438 * 11 9 8 14 14 C 1.50696 * 109.47323 * 270.00177 * 13 11 9 15 15 H 1.07995 * 120.00332 * 359.97438 * 14 13 11 16 16 C 1.37880 * 119.99983 * 180.02562 * 14 13 11 17 17 N 1.31517 * 120.00210 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00019 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46845 * 269.99914 * 18 16 14 20 20 H 1.48503 * 109.47399 * 29.99403 * 18 16 14 21 21 H 1.48498 * 109.47295 * 150.00010 * 18 16 14 22 22 C 1.46843 * 111.19519 * 298.25886 * 6 5 4 23 23 H 1.08996 * 109.46494 * 301.72665 * 22 6 5 24 24 C 1.53006 * 109.46428 * 181.75847 * 22 6 5 25 25 C 1.53039 * 109.52465 * 61.74200 * 22 6 5 26 26 H 1.08999 * 109.47663 * 180.12934 * 1 2 3 27 27 H 1.09000 * 109.47084 * 300.13378 * 1 2 3 28 28 H 1.09005 * 109.47206 * 60.12777 * 1 2 3 29 29 H 1.08999 * 109.50338 * 62.50289 * 4 2 1 30 30 H 1.09003 * 109.50475 * 302.38957 * 4 2 1 31 31 H 1.09000 * 109.46555 * 299.16297 * 5 4 2 32 32 H 1.09003 * 109.45460 * 179.19207 * 5 4 2 33 33 H 1.09004 * 109.46815 * 306.04780 * 7 6 5 34 34 H 1.08993 * 109.46985 * 186.04404 * 7 6 5 35 35 H 1.08998 * 109.46874 * 60.00091 * 8 7 6 36 36 H 1.09003 * 109.46831 * 300.00373 * 8 7 6 37 37 H 1.09002 * 109.46946 * 270.00371 * 12 11 9 38 38 H 1.08999 * 109.46997 * 29.99880 * 12 11 9 39 39 H 1.08993 * 109.47276 * 149.99910 * 12 11 9 40 40 H 1.09004 * 109.47134 * 149.99490 * 13 11 9 41 41 H 1.09010 * 109.47025 * 29.99924 * 13 11 9 42 42 H 0.97000 * 119.99462 * 359.97438 * 17 16 14 43 43 H 1.08994 * 109.46813 * 59.99437 * 24 22 6 44 44 H 1.08996 * 109.47390 * 180.02562 * 24 22 6 45 45 H 1.09003 * 109.46803 * 300.00297 * 24 22 6 46 46 H 1.09003 * 109.49894 * 180.87930 * 25 22 6 47 47 H 1.08995 * 109.53499 * 60.78239 * 25 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0417 -0.7244 -1.2481 5 6 3.5708 -0.7746 -1.2120 6 7 4.0102 -1.4791 -0.0007 7 6 5.4670 -1.6680 -0.0008 8 6 6.1578 -0.3065 0.0991 9 6 7.6523 -0.5003 0.0984 10 8 8.1189 -1.6173 0.0257 11 7 8.4703 0.5678 0.1796 12 6 7.9067 1.9172 0.2679 13 6 9.9231 0.3794 0.1795 14 6 10.4087 0.2167 1.5967 15 1 9.7056 0.2507 2.4157 16 6 11.7509 0.0255 1.8480 17 7 12.6073 -0.0153 0.8507 18 14 12.3529 -0.1754 3.6048 19 1 12.6915 1.1565 4.1674 20 1 11.2855 -0.8024 4.4253 21 1 13.5601 -1.0401 3.6186 22 6 3.5707 -0.7759 1.2112 23 1 3.9673 0.2393 1.2061 24 6 4.0858 -1.5180 2.4462 25 6 2.0416 -0.7258 1.2474 26 1 -0.3634 -1.0276 0.0023 27 1 -0.3633 0.5159 0.8888 28 1 -0.3634 0.5119 -0.8912 29 1 1.7162 -0.1879 -2.1394 30 1 1.6446 -1.7393 -1.2684 31 1 3.9675 0.2406 -1.2058 32 1 3.9376 -1.3025 -2.0923 33 1 5.7692 -2.1619 -0.9243 34 1 5.7534 -2.2841 0.8515 35 1 5.8555 0.1875 1.0225 36 1 5.8712 0.3097 -0.7532 37 1 7.7760 2.3227 -0.7354 38 1 6.9409 1.8753 0.7715 39 1 8.5837 2.5574 0.8333 40 1 10.4022 1.2486 -0.2713 41 1 10.1738 -0.5124 -0.3951 42 1 12.2946 0.0886 -0.0616 43 1 5.1749 -1.5530 2.4210 44 1 3.7593 -0.9964 3.3459 45 1 3.6897 -2.5335 2.4514 46 1 1.7161 -0.1901 2.1392 47 1 1.6440 -1.7404 1.2669 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051731895.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:18 Heat of formation + Delta-G solvation = -54.187966 kcal Electronic energy + Delta-G solvation = -23320.076394 eV Core-core repulsion = 20115.892513 eV Total energy + Delta-G solvation = -3204.183882 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.05854 -38.77898 -35.45478 -34.87285 -32.87830 -32.57900 -30.79678 -28.20109 -27.16234 -26.80187 -25.60793 -23.85976 -22.87187 -22.35956 -20.51893 -19.65272 -18.37091 -16.99176 -16.63119 -15.91865 -15.44632 -15.36179 -15.08738 -14.70364 -14.37713 -14.11460 -13.72145 -13.39109 -12.98700 -12.92053 -12.60559 -12.41982 -12.28603 -12.11543 -12.08047 -11.98323 -11.86960 -11.74209 -11.71613 -11.30355 -11.22679 -10.92659 -10.82690 -10.64773 -10.57450 -10.41540 -10.19682 -10.11997 -9.13833 -9.01323 -8.39489 -8.30022 -7.63710 -6.39417 -4.11369 3.34376 3.41633 3.47673 3.62720 3.74076 3.96868 4.51822 4.53017 4.57304 4.59320 4.92815 5.07604 5.13242 5.14626 5.19155 5.19781 5.27090 5.35979 5.38414 5.43640 5.45342 5.49887 5.57263 5.66448 5.69866 5.74460 5.78980 5.81397 5.83019 5.91141 5.95562 6.01716 6.06213 6.10005 6.14583 6.26182 6.39078 6.78727 7.05384 7.10640 7.12754 7.38422 8.03161 8.27521 8.42614 8.77042 9.00507 9.58584 10.97989 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029238 B = 0.003523 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.443754 B = 7945.438107 C = 8249.991764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 H 0.065 0.935 4 C -0.110 4.110 5 C 0.050 3.950 6 N -0.529 5.529 7 C 0.070 3.930 8 C -0.176 4.176 9 C 0.508 3.492 10 O -0.541 6.541 11 N -0.601 5.601 12 C 0.086 3.914 13 C 0.235 3.765 14 C -0.606 4.606 15 H 0.051 0.949 16 C 0.019 3.981 17 N -0.910 5.910 18 Si 1.075 2.925 19 H -0.288 1.288 20 H -0.289 1.289 21 H -0.283 1.283 22 C 0.077 3.923 23 H 0.042 0.958 24 C -0.152 4.152 25 C -0.105 4.105 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.034 0.966 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.043 0.957 38 H 0.056 0.944 39 H 0.073 0.927 40 H 0.020 0.980 41 H 0.034 0.966 42 H 0.268 0.732 43 H 0.063 0.937 44 H 0.058 0.942 45 H 0.063 0.937 46 H 0.064 0.936 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.585 2.726 -1.846 23.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 H 0.084 0.916 4 C -0.148 4.148 5 C -0.077 4.077 6 N -0.253 5.253 7 C -0.059 4.059 8 C -0.218 4.218 9 C 0.294 3.706 10 O -0.419 6.419 11 N -0.333 5.333 12 C -0.058 4.058 13 C 0.115 3.885 14 C -0.645 4.645 15 H 0.069 0.931 16 C -0.185 4.185 17 N -0.546 5.546 18 Si 0.903 3.097 19 H -0.214 1.214 20 H -0.215 1.215 21 H -0.208 1.208 22 C -0.031 4.031 23 H 0.060 0.940 24 C -0.210 4.210 25 C -0.143 4.143 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.052 0.948 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.092 0.908 40 H 0.038 0.962 41 H 0.052 0.948 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -22.193 1.431 -0.970 22.260 hybrid contribution -0.968 1.365 -0.908 1.904 sum -23.160 2.797 -1.877 23.404 Atomic orbital electron populations 1.21803 0.95199 1.01796 1.01435 1.21198 0.95510 0.99284 0.95431 0.91644 1.21645 0.94823 1.01161 0.97200 1.22119 0.95506 0.96879 0.93240 1.62270 1.12259 1.49174 1.01597 1.22030 0.84489 0.94871 1.04466 1.22367 0.94479 1.01563 1.03383 1.20258 0.88078 0.84919 0.77381 1.90665 1.77483 1.23682 1.50092 1.47989 1.08798 1.05243 1.71233 1.21606 0.98808 0.85086 1.00331 1.19338 0.74182 0.96756 0.98243 1.22265 0.95417 1.54577 0.92192 0.93085 1.25830 0.93011 0.93653 1.06026 1.70775 1.37192 1.46316 1.00328 0.83466 0.75734 0.76749 0.73789 1.21443 1.21498 1.20813 1.21640 0.95148 0.95854 0.90455 0.94000 1.21945 1.01891 1.01010 0.96105 1.21694 0.94276 1.01177 0.97146 0.92626 0.92838 0.92856 0.91786 0.91111 0.94789 0.90666 0.90025 0.89271 0.89428 0.89886 0.93861 0.92508 0.90811 0.96200 0.94849 0.92209 0.91850 0.92346 0.91746 0.91768 0.91082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.20 37.16 0.34 -0.66 16 2 C -0.10 -0.79 2.79 -90.50 -0.25 -1.04 16 3 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 4 C -0.11 -0.96 5.38 -26.66 -0.14 -1.10 16 5 C 0.05 0.52 5.05 -3.84 -0.02 0.50 16 6 N -0.53 -6.31 4.69 -226.69 -1.06 -7.38 16 7 C 0.07 1.00 4.08 -3.82 -0.02 0.99 16 8 C -0.18 -2.64 3.45 -27.88 -0.10 -2.74 16 9 C 0.51 10.69 7.67 -10.99 -0.08 10.61 16 10 O -0.54 -13.75 15.56 5.56 0.09 -13.67 16 11 N -0.60 -13.06 2.86 -182.95 -0.52 -13.58 16 12 C 0.09 1.40 10.24 59.85 0.61 2.01 16 13 C 0.23 6.24 4.47 -5.20 -0.02 6.21 16 14 C -0.61 -17.64 9.39 -34.44 -0.32 -17.96 16 15 H 0.05 1.50 7.81 -52.49 -0.41 1.09 16 16 C 0.02 0.56 5.46 -17.82 -0.10 0.46 16 17 N -0.91 -28.10 13.65 55.43 0.76 -27.35 16 18 Si 1.07 25.92 29.90 -169.99 -5.08 20.84 16 19 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 C 0.08 0.83 1.84 -67.72 -0.12 0.71 16 23 H 0.04 0.47 6.61 -51.93 -0.34 0.13 16 24 C -0.15 -1.70 8.69 37.16 0.32 -1.37 16 25 C -0.11 -0.95 4.66 -26.65 -0.12 -1.07 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.03 0.35 6.75 -51.93 -0.35 0.00 16 32 H 0.07 0.78 8.06 -51.93 -0.42 0.36 16 33 H 0.08 1.26 8.02 -51.93 -0.42 0.84 16 34 H 0.09 1.43 6.28 -51.93 -0.33 1.10 16 35 H 0.09 1.23 5.49 -51.93 -0.29 0.94 16 36 H 0.08 1.10 6.65 -51.93 -0.35 0.76 16 37 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.77 6.44 -51.93 -0.33 0.43 16 39 H 0.07 1.25 8.07 -51.93 -0.42 0.83 16 40 H 0.02 0.53 7.94 -51.93 -0.41 0.12 16 41 H 0.03 0.99 7.29 -51.92 -0.38 0.61 16 42 H 0.27 8.21 7.22 -40.82 -0.29 7.92 16 43 H 0.06 0.83 6.07 -51.93 -0.32 0.51 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 358.62 15.07 5.40 5.40 Total: -1.00 -33.28 358.62 -8.94 -42.23 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -8.50 Total: -2.05 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -0.03 Total: -4.45 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: -0.83 Total: -48.30 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: 0.09 Total: -13.67 kcal Atomic # 14 Polarization: 25.92 SS G_CDS: -5.08 Total: 20.84 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.28 -8.94 -42.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051731895.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.959 kcal (2) G-P(sol) polarization free energy of solvation -33.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds