Wall clock time and date at job start Tue Mar 31 2020 06:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.52620 * 2 1 4 4 C 1.53116 * 109.52296 * 239.86939 * 2 1 3 5 5 C 1.53031 * 109.27969 * 182.44340 * 4 2 1 6 6 N 1.46850 * 109.52405 * 59.18125 * 5 4 2 7 7 C 1.46901 * 111.00165 * 174.16248 * 6 5 4 8 8 C 1.53002 * 109.47221 * 66.04280 * 7 6 5 9 9 C 1.50699 * 109.46948 * 180.02562 * 8 7 6 10 10 O 1.21274 * 120.00229 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99443 * 180.02562 * 9 8 7 12 12 C 1.46500 * 120.00571 * 359.97438 * 11 9 8 13 13 C 1.46500 * 119.99787 * 179.97438 * 11 9 8 14 14 C 1.50696 * 109.47323 * 270.00177 * 13 11 9 15 15 H 1.07995 * 120.00332 * 359.97438 * 14 13 11 16 16 C 1.37880 * 119.99983 * 180.02562 * 14 13 11 17 17 N 1.31517 * 120.00210 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00019 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46845 * 269.99914 * 18 16 14 20 20 H 1.48503 * 109.47399 * 29.99403 * 18 16 14 21 21 H 1.48498 * 109.47295 * 150.00010 * 18 16 14 22 22 C 1.46843 * 111.19519 * 298.25886 * 6 5 4 23 23 H 1.08996 * 109.46494 * 301.72665 * 22 6 5 24 24 C 1.53006 * 109.46428 * 181.75847 * 22 6 5 25 25 C 1.53039 * 109.52465 * 61.74200 * 22 6 5 26 26 H 1.08999 * 109.47663 * 180.12934 * 1 2 3 27 27 H 1.09000 * 109.47084 * 300.13378 * 1 2 3 28 28 H 1.09005 * 109.47206 * 60.12777 * 1 2 3 29 29 H 1.08999 * 109.50338 * 62.50289 * 4 2 1 30 30 H 1.09003 * 109.50475 * 302.38957 * 4 2 1 31 31 H 1.09000 * 109.46555 * 299.16297 * 5 4 2 32 32 H 1.09003 * 109.45460 * 179.19207 * 5 4 2 33 33 H 1.09004 * 109.46815 * 306.04780 * 7 6 5 34 34 H 1.08993 * 109.46985 * 186.04404 * 7 6 5 35 35 H 1.08998 * 109.46874 * 60.00091 * 8 7 6 36 36 H 1.09003 * 109.46831 * 300.00373 * 8 7 6 37 37 H 1.09002 * 109.46946 * 270.00371 * 12 11 9 38 38 H 1.08999 * 109.46997 * 29.99880 * 12 11 9 39 39 H 1.08993 * 109.47276 * 149.99910 * 12 11 9 40 40 H 1.09004 * 109.47134 * 149.99490 * 13 11 9 41 41 H 1.09010 * 109.47025 * 29.99924 * 13 11 9 42 42 H 0.97000 * 119.99462 * 359.97438 * 17 16 14 43 43 H 1.08994 * 109.46813 * 59.99437 * 24 22 6 44 44 H 1.08996 * 109.47390 * 180.02562 * 24 22 6 45 45 H 1.09003 * 109.46803 * 300.00297 * 24 22 6 46 46 H 1.09003 * 109.49894 * 180.87930 * 25 22 6 47 47 H 1.08995 * 109.53499 * 60.78239 * 25 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0417 -0.7244 -1.2481 5 6 3.5708 -0.7746 -1.2120 6 7 4.0102 -1.4791 -0.0007 7 6 5.4670 -1.6680 -0.0008 8 6 6.1578 -0.3065 0.0991 9 6 7.6523 -0.5003 0.0984 10 8 8.1189 -1.6173 0.0257 11 7 8.4703 0.5678 0.1796 12 6 7.9067 1.9172 0.2679 13 6 9.9231 0.3794 0.1795 14 6 10.4087 0.2167 1.5967 15 1 9.7056 0.2507 2.4157 16 6 11.7509 0.0255 1.8480 17 7 12.6073 -0.0153 0.8507 18 14 12.3529 -0.1754 3.6048 19 1 12.6915 1.1565 4.1674 20 1 11.2855 -0.8024 4.4253 21 1 13.5601 -1.0401 3.6186 22 6 3.5707 -0.7759 1.2112 23 1 3.9673 0.2393 1.2061 24 6 4.0858 -1.5180 2.4462 25 6 2.0416 -0.7258 1.2474 26 1 -0.3634 -1.0276 0.0023 27 1 -0.3633 0.5159 0.8888 28 1 -0.3634 0.5119 -0.8912 29 1 1.7162 -0.1879 -2.1394 30 1 1.6446 -1.7393 -1.2684 31 1 3.9675 0.2406 -1.2058 32 1 3.9376 -1.3025 -2.0923 33 1 5.7692 -2.1619 -0.9243 34 1 5.7534 -2.2841 0.8515 35 1 5.8555 0.1875 1.0225 36 1 5.8712 0.3097 -0.7532 37 1 7.7760 2.3227 -0.7354 38 1 6.9409 1.8753 0.7715 39 1 8.5837 2.5574 0.8333 40 1 10.4022 1.2486 -0.2713 41 1 10.1738 -0.5124 -0.3951 42 1 12.2946 0.0886 -0.0616 43 1 5.1749 -1.5530 2.4210 44 1 3.7593 -0.9964 3.3459 45 1 3.6897 -2.5335 2.4514 46 1 1.7161 -0.1901 2.1392 47 1 1.6440 -1.7404 1.2669 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051731895.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:17 Heat of formation + Delta-G solvation = -75.764366 kcal Electronic energy + Delta-G solvation = -23321.012017 eV Core-core repulsion = 20115.892513 eV Total energy + Delta-G solvation = -3205.119505 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.23633 -40.16883 -36.90168 -36.15296 -34.98778 -33.43659 -31.95969 -29.65051 -28.46913 -27.63500 -27.19250 -25.40624 -24.19226 -23.49108 -21.30228 -20.80288 -19.75371 -19.08653 -18.13618 -17.26236 -16.88644 -16.44812 -16.22191 -15.81057 -15.69808 -15.23879 -15.10066 -14.74687 -14.31680 -13.98751 -13.92968 -13.74528 -13.60255 -13.36698 -13.27618 -13.18476 -12.99976 -12.79764 -12.74841 -12.67491 -12.53953 -12.47100 -12.13630 -12.00101 -11.65551 -11.48345 -11.23217 -11.12628 -11.00353 -10.75232 -10.64304 -9.52274 -9.26209 -8.72968 -6.49167 1.46817 1.57480 1.69543 1.75388 2.22269 2.51371 2.88904 3.06629 3.68491 3.76560 3.82360 3.88604 3.93775 4.01277 4.20822 4.23878 4.33852 4.38312 4.41153 4.53224 4.57480 4.63682 4.69605 4.75529 4.79005 4.81428 4.83472 4.88844 4.91584 4.95092 4.98857 5.06745 5.09745 5.19186 5.23578 5.32660 5.35753 5.40305 5.49509 5.59286 5.78042 6.08595 6.09893 6.22124 6.41043 6.61371 7.24136 7.36415 8.61898 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029238 B = 0.003523 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.443754 B = 7945.438107 C = 8249.991764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.094 4.094 3 H 0.068 0.932 4 C -0.106 4.106 5 C 0.046 3.954 6 N -0.531 5.531 7 C 0.079 3.921 8 C -0.153 4.153 9 C 0.497 3.503 10 O -0.596 6.596 11 N -0.609 5.609 12 C 0.080 3.920 13 C 0.245 3.755 14 C -0.618 4.618 15 H 0.044 0.956 16 C -0.032 4.032 17 N -0.931 5.931 18 Si 1.122 2.878 19 H -0.261 1.261 20 H -0.278 1.278 21 H -0.281 1.281 22 C 0.075 3.925 23 H 0.045 0.955 24 C -0.150 4.150 25 C -0.101 4.101 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.040 0.960 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.106 0.894 36 H 0.111 0.889 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.065 0.935 40 H 0.018 0.982 41 H -0.008 1.008 42 H 0.255 0.745 43 H 0.039 0.961 44 H 0.074 0.926 45 H 0.060 0.940 46 H 0.077 0.923 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.030 4.420 -0.939 26.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.112 4.112 3 H 0.087 0.913 4 C -0.144 4.144 5 C -0.081 4.081 6 N -0.255 5.255 7 C -0.050 4.050 8 C -0.195 4.195 9 C 0.286 3.714 10 O -0.478 6.478 11 N -0.340 5.340 12 C -0.062 4.062 13 C 0.123 3.877 14 C -0.656 4.656 15 H 0.063 0.937 16 C -0.230 4.230 17 N -0.568 5.568 18 Si 0.943 3.057 19 H -0.186 1.186 20 H -0.204 1.204 21 H -0.207 1.207 22 C -0.033 4.033 23 H 0.063 0.937 24 C -0.208 4.208 25 C -0.138 4.138 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.058 0.942 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.124 0.876 36 H 0.129 0.871 37 H 0.090 0.910 38 H 0.110 0.890 39 H 0.084 0.916 40 H 0.036 0.964 41 H 0.010 0.990 42 H 0.065 0.935 43 H 0.058 0.942 44 H 0.093 0.907 45 H 0.079 0.921 46 H 0.095 0.905 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -24.692 3.177 -0.082 24.896 hybrid contribution -0.257 0.830 -1.244 1.517 sum -24.948 4.007 -1.326 25.303 Atomic orbital electron populations 1.21767 0.94093 1.01933 1.02109 1.21194 0.96400 0.99100 0.94543 0.91319 1.21625 0.93283 1.01206 0.98256 1.22226 0.96872 0.96795 0.92241 1.62288 1.10053 1.50255 1.02908 1.21806 0.86287 0.94182 1.02750 1.22283 0.89296 1.02581 1.05312 1.21334 0.90437 0.83833 0.75769 1.90634 1.78893 1.25873 1.52355 1.48081 1.06947 1.07902 1.71120 1.21909 0.99812 0.81946 1.02504 1.18882 0.77702 0.94713 0.96452 1.22547 0.95650 1.54327 0.93069 0.93724 1.27412 0.93619 0.92563 1.09430 1.70898 1.37615 1.48066 1.00227 0.82879 0.75525 0.78089 0.69253 1.18631 1.20374 1.20653 1.21735 0.96529 0.95525 0.89493 0.93679 1.21927 1.00249 1.01296 0.97285 1.21669 0.92603 1.01258 0.98307 0.92774 0.92248 0.92151 0.90277 0.91715 0.94178 0.91053 0.91552 0.91422 0.87625 0.87128 0.90992 0.89034 0.91629 0.96370 0.98971 0.93541 0.94237 0.90719 0.92091 0.90460 0.91664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.20 71.98 0.66 -0.87 16 2 C -0.09 -1.25 2.79 -10.72 -0.03 -1.28 16 3 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 4 C -0.11 -1.56 5.38 30.64 0.16 -1.39 16 5 C 0.05 0.86 5.05 86.32 0.44 1.29 16 6 N -0.53 -11.95 4.69 -871.11 -4.09 -16.04 16 7 C 0.08 2.26 4.08 86.30 0.35 2.61 16 8 C -0.15 -4.37 3.45 29.85 0.10 -4.27 16 9 C 0.50 21.14 7.67 87.66 0.67 21.81 16 10 O -0.60 -31.63 15.56 -3.01 -0.05 -31.67 16 11 N -0.61 -26.49 2.86 -851.14 -2.43 -28.92 16 12 C 0.08 2.44 10.24 127.77 1.31 3.75 16 13 C 0.24 13.43 4.47 85.63 0.38 13.81 16 14 C -0.62 -36.64 9.39 25.60 0.24 -36.40 16 15 H 0.04 2.65 7.81 -2.91 -0.02 2.62 16 16 C -0.03 -1.91 5.46 84.65 0.46 -1.45 16 17 N -0.93 -58.78 13.65 21.45 0.29 -58.49 16 18 Si 1.12 51.88 29.90 68.60 2.05 53.93 16 19 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 20 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 22 C 0.08 1.46 1.84 44.94 0.08 1.54 16 23 H 0.05 0.86 6.61 -2.39 -0.02 0.85 16 24 C -0.15 -3.17 8.69 71.98 0.63 -2.55 16 25 C -0.10 -1.54 4.66 30.65 0.14 -1.40 16 26 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 29 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.04 0.70 6.75 -2.39 -0.02 0.69 16 32 H 0.07 1.38 8.06 -2.39 -0.02 1.36 16 33 H 0.07 2.09 8.02 -2.38 -0.02 2.07 16 34 H 0.07 2.24 6.28 -2.39 -0.02 2.22 16 35 H 0.11 2.68 5.49 -2.39 -0.01 2.67 16 36 H 0.11 2.59 6.65 -2.39 -0.02 2.57 16 37 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.09 2.14 6.44 -2.39 -0.02 2.12 16 39 H 0.06 2.11 8.07 -2.39 -0.02 2.09 16 40 H 0.02 1.00 7.94 -2.38 -0.02 0.98 16 41 H -0.01 -0.48 7.29 -2.38 -0.02 -0.50 16 42 H 0.26 16.30 7.22 -92.71 -0.67 15.63 16 43 H 0.04 1.02 6.07 -2.39 -0.01 1.00 16 44 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -75.03 358.62 2.40 -72.63 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: 1.01 Total: 13.36 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: 5.61 Total: -4.80 kcal Atomic # 7 Polarization: -97.22 SS G_CDS: -6.23 Total: -103.45 kcal Atomic # 8 Polarization: -31.63 SS G_CDS: -0.05 Total: -31.67 kcal Atomic # 14 Polarization: 51.88 SS G_CDS: 2.05 Total: 53.93 kcal Total: -75.03 2.40 -72.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051731895.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.133 kcal (2) G-P(sol) polarization free energy of solvation -75.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds