Wall clock time and date at job start Tue Mar 31 2020 06:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47033 * 2 1 4 4 C 1.50702 * 109.46760 * 119.99811 * 2 1 3 5 5 O 1.21279 * 120.00148 * 103.94797 * 4 2 1 6 6 N 1.34778 * 120.00196 * 283.66990 * 4 2 1 7 7 C 1.46499 * 119.99965 * 0.27309 * 6 4 2 8 8 C 1.46502 * 120.00218 * 180.27934 * 6 4 2 9 9 C 1.50694 * 109.47122 * 89.99805 * 8 6 4 10 10 H 1.08001 * 120.00472 * 359.97438 * 9 8 6 11 11 C 1.37884 * 119.99776 * 180.02562 * 9 8 6 12 12 N 1.31515 * 119.99806 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99860 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47026 * 59.99975 * 13 11 9 15 15 H 1.48501 * 109.47016 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47417 * 299.99863 * 13 11 9 17 17 N 1.46892 * 109.47095 * 239.99484 * 2 1 3 18 18 C 1.46850 * 110.99757 * 76.54776 * 17 2 1 19 19 C 1.53043 * 109.52087 * 174.16168 * 18 17 2 20 20 H 1.08997 * 109.53256 * 299.21386 * 19 18 17 21 21 C 1.53007 * 109.50017 * 179.11800 * 19 18 17 22 22 C 1.53122 * 109.28069 * 59.17908 * 19 18 17 23 23 C 1.53120 * 109.15827 * 302.34275 * 22 19 18 24 24 H 1.08995 * 109.50383 * 297.71553 * 23 22 19 25 25 C 1.52995 * 109.50239 * 177.59576 * 23 22 19 26 26 C 1.46846 * 111.00566 * 312.33803 * 17 2 1 27 27 H 1.09000 * 109.46816 * 59.99894 * 1 2 3 28 28 H 1.08999 * 109.47764 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47180 * 300.00275 * 1 2 3 30 30 H 1.09001 * 109.46905 * 89.99656 * 7 6 4 31 31 H 1.08995 * 109.47347 * 210.00313 * 7 6 4 32 32 H 1.09008 * 109.47106 * 330.00652 * 7 6 4 33 33 H 1.08997 * 109.46831 * 210.00342 * 8 6 4 34 34 H 1.09003 * 109.46895 * 329.99610 * 8 6 4 35 35 H 0.96999 * 119.99669 * 180.02562 * 12 11 9 36 36 H 1.08994 * 109.46088 * 294.17258 * 18 17 2 37 37 H 1.08994 * 109.46547 * 54.14322 * 18 17 2 38 38 H 1.08993 * 109.47146 * 300.19588 * 21 19 18 39 39 H 1.08999 * 109.46828 * 60.19356 * 21 19 18 40 40 H 1.09003 * 109.47009 * 180.19495 * 21 19 18 41 41 H 1.08995 * 109.51993 * 182.43685 * 22 19 18 42 42 H 1.09001 * 109.57241 * 62.28240 * 22 19 18 43 43 H 1.09013 * 109.47180 * 300.20002 * 25 23 22 44 44 H 1.09002 * 109.47427 * 60.19516 * 25 23 22 45 45 H 1.08996 * 109.47586 * 180.19912 * 25 23 22 46 46 H 1.09007 * 109.45631 * 305.85627 * 26 17 2 47 47 H 1.09000 * 109.46358 * 65.82637 * 26 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 8 2.4730 -1.8368 1.1430 6 7 1.9968 -0.0918 2.4275 7 6 1.4644 1.2689 2.5333 8 6 2.4907 -0.7801 3.6227 9 6 3.9589 -0.4898 3.7989 10 1 4.4729 0.1438 3.0912 11 6 4.6463 -1.0338 4.8632 12 7 4.0205 -1.8057 5.7247 13 14 6.4664 -0.6744 5.0813 14 1 6.6671 0.7889 5.2348 15 1 6.9670 -1.3721 6.2929 16 1 7.2119 -1.1540 3.8899 17 7 2.0196 -0.6926 -1.1993 18 6 1.8943 0.1609 -2.3878 19 6 2.5446 -0.5334 -3.5867 20 1 3.6026 -0.6978 -3.3829 21 6 2.3944 0.3464 -4.8295 22 6 1.8550 -1.8793 -3.8268 23 6 1.9578 -2.7300 -2.5579 24 1 3.0065 -2.9291 -2.3372 25 6 1.2193 -4.0532 -2.7688 26 6 1.3246 -1.9722 -1.3888 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 0.3929 1.2257 2.7284 31 1 1.9618 1.7911 3.3505 32 1 1.6424 1.8023 1.5994 33 1 1.9431 -0.4282 4.4969 34 1 2.3437 -1.8543 3.5101 35 1 4.5041 -2.1880 6.4736 36 1 0.8396 0.3374 -2.5985 37 1 2.3924 1.1130 -2.2054 38 1 1.3363 0.5116 -5.0320 39 1 2.8854 1.3043 -4.6580 40 1 2.8547 -0.1501 -5.6839 41 1 2.3432 -2.3964 -4.6527 42 1 0.8055 -1.7135 -4.0703 43 1 0.1711 -3.8529 -2.9912 44 1 1.6707 -4.5925 -3.6016 45 1 1.2898 -4.6570 -1.8641 46 1 1.4089 -2.5692 -0.4807 47 1 0.2725 -1.7856 -1.6044 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052869738.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:12 Heat of formation + Delta-G solvation = -43.186081 kcal Electronic energy + Delta-G solvation = -23814.644603 eV Core-core repulsion = 20610.937799 eV Total energy + Delta-G solvation = -3203.706804 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.06640 -38.33512 -35.01416 -34.64486 -33.42609 -32.55517 -30.07697 -27.65475 -26.67671 -26.53259 -25.93387 -24.94248 -23.19859 -21.25533 -20.83402 -19.44052 -18.17380 -16.60012 -16.31877 -15.78505 -15.14542 -15.01773 -14.62268 -14.54028 -14.26163 -14.18716 -13.72284 -13.18554 -12.85819 -12.72801 -12.70346 -12.42454 -12.21240 -12.06955 -11.99126 -11.93424 -11.67641 -11.47277 -11.39058 -11.17073 -11.10001 -10.82631 -10.68478 -10.53322 -10.49298 -10.20053 -10.17138 -10.07484 -9.57373 -8.72519 -8.38556 -7.96073 -7.55386 -5.99566 -4.03802 3.35543 3.39699 3.41602 3.49528 3.78679 4.25611 4.50145 4.67112 4.83994 4.85656 5.01053 5.13516 5.21584 5.24591 5.34338 5.36150 5.44805 5.46151 5.54032 5.57063 5.60817 5.66495 5.71227 5.75859 5.81184 5.85029 5.87529 5.93938 5.97553 6.03044 6.10676 6.13644 6.24493 6.26592 6.28395 6.48901 6.55997 7.05182 7.27894 7.34751 7.49976 7.61678 7.97531 8.29115 8.50126 8.96557 9.20985 9.61244 11.08479 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019862 B = 0.004323 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.421111 B = 6474.999210 C = 6661.362268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.063 3.937 3 H 0.097 0.903 4 C 0.514 3.486 5 O -0.525 6.525 6 N -0.604 5.604 7 C 0.083 3.917 8 C 0.247 3.753 9 C -0.524 4.524 10 H 0.056 0.944 11 C 0.061 3.939 12 N -0.897 5.897 13 Si 0.898 3.102 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.276 1.276 17 N -0.516 5.516 18 C 0.061 3.939 19 C -0.090 4.090 20 H 0.079 0.921 21 C -0.144 4.144 22 C -0.109 4.109 23 C -0.089 4.089 24 H 0.080 0.920 25 C -0.144 4.144 26 C 0.056 3.944 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.043 0.957 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.030 0.970 34 H 0.043 0.957 35 H 0.263 0.737 36 H 0.030 0.970 37 H 0.071 0.929 38 H 0.051 0.949 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.060 0.940 42 H 0.055 0.945 43 H 0.049 0.951 44 H 0.053 0.947 45 H 0.058 0.942 46 H 0.099 0.901 47 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.678 4.872 -17.864 20.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.049 4.049 3 H 0.115 0.885 4 C 0.300 3.700 5 O -0.401 6.401 6 N -0.337 5.337 7 C -0.061 4.061 8 C 0.128 3.872 9 C -0.563 4.563 10 H 0.075 0.925 11 C -0.141 4.141 12 N -0.536 5.536 13 Si 0.725 3.275 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.202 1.202 17 N -0.239 5.239 18 C -0.067 4.067 19 C -0.109 4.109 20 H 0.098 0.902 21 C -0.202 4.202 22 C -0.146 4.146 23 C -0.108 4.108 24 H 0.098 0.902 25 C -0.202 4.202 26 C -0.071 4.071 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.061 0.939 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.048 0.952 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.049 0.951 37 H 0.089 0.911 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.077 0.923 46 H 0.118 0.882 47 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -7.910 4.054 -17.635 19.748 hybrid contribution 0.172 0.567 0.153 0.612 sum -7.738 4.622 -17.482 19.668 Atomic orbital electron populations 1.22366 0.95820 1.03075 1.02552 1.21676 0.93880 0.98553 0.90749 0.88473 1.20044 0.79350 0.86844 0.83797 1.90607 1.45570 1.19017 1.84902 1.48128 1.61201 1.15038 1.09290 1.21675 0.97741 0.84631 1.02066 1.19249 0.94003 0.93710 0.80210 1.21410 0.94575 1.30379 1.09918 0.92526 1.24928 0.98488 0.94932 0.95731 1.69925 1.36502 1.32657 1.14488 0.86566 0.85134 0.78274 0.77497 1.20301 1.21222 1.20154 1.61692 1.57090 1.03900 1.01171 1.22152 0.98401 0.96065 0.90038 1.21158 1.01044 0.94900 0.93804 0.90229 1.21785 1.01454 0.99603 0.97357 1.21707 1.00053 0.95332 0.97520 1.21147 1.01181 0.94339 0.94164 0.90202 1.21765 0.99793 0.96919 1.01694 1.22354 0.93974 0.90643 1.00111 0.92183 0.91624 0.91272 0.93862 0.90826 0.92580 0.95159 0.93930 0.92734 0.95146 0.91094 0.92986 0.92650 0.92609 0.92166 0.92580 0.93176 0.92808 0.92283 0.88241 0.95528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.30 8.20 37.16 0.30 -1.99 16 2 C 0.06 1.00 1.93 -68.87 -0.13 0.87 16 3 H 0.10 1.39 6.23 -51.93 -0.32 1.07 16 4 C 0.51 10.90 6.84 -10.98 -0.08 10.82 16 5 O -0.52 -13.35 13.86 5.56 0.08 -13.27 16 6 N -0.60 -12.98 2.86 -182.95 -0.52 -13.51 16 7 C 0.08 1.33 9.35 59.85 0.56 1.89 16 8 C 0.25 6.58 5.16 -5.20 -0.03 6.55 16 9 C -0.52 -15.14 9.39 -34.44 -0.32 -15.46 16 10 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 11 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 12 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 13 Si 0.90 22.26 29.54 -169.99 -5.02 17.24 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 15 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 16 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 17 N -0.52 -7.99 4.36 -228.09 -0.99 -8.99 16 18 C 0.06 0.74 4.51 -3.83 -0.02 0.73 16 19 C -0.09 -0.99 2.88 -90.53 -0.26 -1.25 16 20 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 21 C -0.14 -1.24 9.20 37.16 0.34 -0.90 16 22 C -0.11 -1.17 4.57 -26.61 -0.12 -1.29 16 23 C -0.09 -1.17 2.88 -90.54 -0.26 -1.43 16 24 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 25 C -0.14 -1.62 9.20 37.15 0.34 -1.28 16 26 C 0.06 0.85 3.45 -3.84 -0.01 0.84 16 27 H 0.06 0.65 7.09 -51.93 -0.37 0.28 16 28 H 0.06 0.90 6.45 -51.93 -0.33 0.57 16 29 H 0.07 0.83 6.47 -51.93 -0.34 0.50 16 30 H 0.04 0.59 7.45 -51.93 -0.39 0.20 16 31 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 32 H 0.06 0.74 6.02 -51.92 -0.31 0.43 16 33 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 34 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 35 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 36 H 0.03 0.34 7.13 -51.93 -0.37 -0.03 16 37 H 0.07 0.82 7.95 -51.93 -0.41 0.41 16 38 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 44 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.10 1.84 5.87 -51.93 -0.30 1.54 16 47 H 0.03 0.37 6.59 -51.93 -0.34 0.02 16 LS Contribution 356.59 15.07 5.37 5.37 Total: -1.00 -32.71 356.59 -8.62 -41.33 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -8.49 Total: -1.69 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: 0.22 Total: -0.24 kcal Atomic # 7 Polarization: -47.97 SS G_CDS: -0.78 Total: -48.75 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.08 Total: -13.27 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.71 -8.62 -41.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052869738.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.853 kcal (2) G-P(sol) polarization free energy of solvation -32.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds