Wall clock time and date at job start Tue Mar 31 2020 06:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47033 * 2 1 4 4 C 1.50702 * 109.46760 * 119.99811 * 2 1 3 5 5 O 1.21279 * 120.00148 * 103.94797 * 4 2 1 6 6 N 1.34778 * 120.00196 * 283.66990 * 4 2 1 7 7 C 1.46499 * 119.99965 * 0.27309 * 6 4 2 8 8 C 1.46502 * 120.00218 * 180.27934 * 6 4 2 9 9 C 1.50694 * 109.47122 * 89.99805 * 8 6 4 10 10 H 1.08001 * 120.00472 * 359.97438 * 9 8 6 11 11 C 1.37884 * 119.99776 * 180.02562 * 9 8 6 12 12 N 1.31515 * 119.99806 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99860 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47026 * 59.99975 * 13 11 9 15 15 H 1.48501 * 109.47016 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47417 * 299.99863 * 13 11 9 17 17 N 1.46892 * 109.47095 * 239.99484 * 2 1 3 18 18 C 1.46850 * 110.99757 * 76.54776 * 17 2 1 19 19 C 1.53043 * 109.52087 * 174.16168 * 18 17 2 20 20 H 1.08997 * 109.53256 * 299.21386 * 19 18 17 21 21 C 1.53007 * 109.50017 * 179.11800 * 19 18 17 22 22 C 1.53122 * 109.28069 * 59.17908 * 19 18 17 23 23 C 1.53120 * 109.15827 * 302.34275 * 22 19 18 24 24 H 1.08995 * 109.50383 * 297.71553 * 23 22 19 25 25 C 1.52995 * 109.50239 * 177.59576 * 23 22 19 26 26 C 1.46846 * 111.00566 * 312.33803 * 17 2 1 27 27 H 1.09000 * 109.46816 * 59.99894 * 1 2 3 28 28 H 1.08999 * 109.47764 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47180 * 300.00275 * 1 2 3 30 30 H 1.09001 * 109.46905 * 89.99656 * 7 6 4 31 31 H 1.08995 * 109.47347 * 210.00313 * 7 6 4 32 32 H 1.09008 * 109.47106 * 330.00652 * 7 6 4 33 33 H 1.08997 * 109.46831 * 210.00342 * 8 6 4 34 34 H 1.09003 * 109.46895 * 329.99610 * 8 6 4 35 35 H 0.96999 * 119.99669 * 180.02562 * 12 11 9 36 36 H 1.08994 * 109.46088 * 294.17258 * 18 17 2 37 37 H 1.08994 * 109.46547 * 54.14322 * 18 17 2 38 38 H 1.08993 * 109.47146 * 300.19588 * 21 19 18 39 39 H 1.08999 * 109.46828 * 60.19356 * 21 19 18 40 40 H 1.09003 * 109.47009 * 180.19495 * 21 19 18 41 41 H 1.08995 * 109.51993 * 182.43685 * 22 19 18 42 42 H 1.09001 * 109.57241 * 62.28240 * 22 19 18 43 43 H 1.09013 * 109.47180 * 300.20002 * 25 23 22 44 44 H 1.09002 * 109.47427 * 60.19516 * 25 23 22 45 45 H 1.08996 * 109.47586 * 180.19912 * 25 23 22 46 46 H 1.09007 * 109.45631 * 305.85627 * 26 17 2 47 47 H 1.09000 * 109.46358 * 65.82637 * 26 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 8 2.4730 -1.8368 1.1430 6 7 1.9968 -0.0918 2.4275 7 6 1.4644 1.2689 2.5333 8 6 2.4907 -0.7801 3.6227 9 6 3.9589 -0.4898 3.7989 10 1 4.4729 0.1438 3.0912 11 6 4.6463 -1.0338 4.8632 12 7 4.0205 -1.8057 5.7247 13 14 6.4664 -0.6744 5.0813 14 1 6.6671 0.7889 5.2348 15 1 6.9670 -1.3721 6.2929 16 1 7.2119 -1.1540 3.8899 17 7 2.0196 -0.6926 -1.1993 18 6 1.8943 0.1609 -2.3878 19 6 2.5446 -0.5334 -3.5867 20 1 3.6026 -0.6978 -3.3829 21 6 2.3944 0.3464 -4.8295 22 6 1.8550 -1.8793 -3.8268 23 6 1.9578 -2.7300 -2.5579 24 1 3.0065 -2.9291 -2.3372 25 6 1.2193 -4.0532 -2.7688 26 6 1.3246 -1.9722 -1.3888 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 0.3929 1.2257 2.7284 31 1 1.9618 1.7911 3.3505 32 1 1.6424 1.8023 1.5994 33 1 1.9431 -0.4282 4.4969 34 1 2.3437 -1.8543 3.5101 35 1 4.5041 -2.1880 6.4736 36 1 0.8396 0.3374 -2.5985 37 1 2.3924 1.1130 -2.2054 38 1 1.3363 0.5116 -5.0320 39 1 2.8854 1.3043 -4.6580 40 1 2.8547 -0.1501 -5.6839 41 1 2.3432 -2.3964 -4.6527 42 1 0.8055 -1.7135 -4.0703 43 1 0.1711 -3.8529 -2.9912 44 1 1.6707 -4.5925 -3.6016 45 1 1.2898 -4.6570 -1.8641 46 1 1.4089 -2.5692 -0.4807 47 1 0.2725 -1.7856 -1.6044 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052869738.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:11 Heat of formation + Delta-G solvation = -64.728683 kcal Electronic energy + Delta-G solvation = -23815.578761 eV Core-core repulsion = 20610.937799 eV Total energy + Delta-G solvation = -3204.640961 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.37833 -39.70594 -36.58464 -36.04646 -34.68297 -34.34240 -31.35158 -29.50661 -27.59896 -27.44979 -27.37166 -26.30206 -24.94102 -22.68292 -21.77243 -20.43879 -19.72826 -18.69029 -17.91036 -17.24257 -16.60223 -16.32589 -16.04492 -15.89665 -15.47581 -15.27272 -15.12094 -14.47797 -14.31082 -13.88468 -13.74570 -13.67237 -13.50936 -13.38494 -13.19772 -13.13491 -12.88526 -12.82249 -12.73944 -12.60022 -12.53514 -12.40776 -12.18040 -12.14688 -11.70793 -11.61207 -11.46050 -11.22969 -11.09051 -10.64285 -10.30527 -9.39258 -9.09524 -8.22138 -6.36902 1.35275 1.40133 1.47291 1.88830 2.28548 2.41519 3.02197 3.07034 3.68694 3.77502 3.89673 3.95064 4.04744 4.12554 4.16343 4.39587 4.42672 4.51166 4.60086 4.61966 4.64819 4.72980 4.76326 4.78537 4.82888 4.85353 4.87752 4.94845 4.98854 5.02851 5.07377 5.16084 5.16820 5.22834 5.25635 5.33895 5.39120 5.47256 5.57446 5.59510 5.86417 6.07456 6.10783 6.28922 6.71117 6.84759 7.29556 7.57010 8.84566 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019862 B = 0.004323 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.421111 B = 6474.999210 C = 6661.362268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.076 3.924 3 H 0.119 0.881 4 C 0.502 3.498 5 O -0.581 6.581 6 N -0.611 5.611 7 C 0.078 3.922 8 C 0.262 3.738 9 C -0.542 4.542 10 H 0.050 0.950 11 C 0.008 3.992 12 N -0.929 5.929 13 Si 0.967 3.033 14 H -0.259 1.259 15 H -0.277 1.277 16 H -0.280 1.280 17 N -0.543 5.543 18 C 0.062 3.938 19 C -0.091 4.091 20 H 0.057 0.943 21 C -0.137 4.137 22 C -0.101 4.101 23 C -0.090 4.090 24 H 0.048 0.952 25 C -0.140 4.140 26 C 0.064 3.936 27 H 0.092 0.908 28 H 0.049 0.951 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.023 0.977 34 H -0.006 1.006 35 H 0.267 0.733 36 H 0.050 0.950 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.065 0.935 44 H 0.069 0.931 45 H 0.039 0.961 46 H 0.053 0.947 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.340 7.295 -20.146 23.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.036 4.036 3 H 0.137 0.863 4 C 0.290 3.710 5 O -0.461 6.461 6 N -0.344 5.344 7 C -0.064 4.064 8 C 0.141 3.859 9 C -0.580 4.580 10 H 0.069 0.931 11 C -0.191 4.191 12 N -0.569 5.569 13 Si 0.791 3.209 14 H -0.183 1.183 15 H -0.202 1.202 16 H -0.206 1.206 17 N -0.267 5.267 18 C -0.065 4.065 19 C -0.109 4.109 20 H 0.075 0.925 21 C -0.194 4.194 22 C -0.138 4.138 23 C -0.109 4.109 24 H 0.066 0.934 25 C -0.197 4.197 26 C -0.064 4.064 27 H 0.111 0.889 28 H 0.068 0.932 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.109 0.891 33 H 0.041 0.959 34 H 0.013 0.987 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.097 0.903 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.058 0.942 46 H 0.072 0.928 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -8.601 6.531 -19.933 22.671 hybrid contribution 0.361 -0.227 0.881 0.979 sum -8.240 6.304 -19.052 21.694 Atomic orbital electron populations 1.22315 0.93143 1.02776 1.04659 1.21591 0.95742 0.98226 0.88037 0.86329 1.21213 0.78232 0.86459 0.85127 1.90584 1.47967 1.21676 1.85880 1.48159 1.61158 1.16994 1.08048 1.21975 0.99064 0.81653 1.03731 1.18694 0.93439 0.91543 0.82238 1.21670 0.95790 1.30570 1.10012 0.93143 1.25849 1.03408 0.94512 0.95309 1.70045 1.38468 1.33364 1.14989 0.85487 0.78958 0.79118 0.77362 1.18329 1.20156 1.20604 1.61613 1.58018 1.04673 1.02410 1.22256 0.99778 0.95715 0.88730 1.21164 0.99601 0.95508 0.94673 0.92469 1.21719 1.02433 0.99221 0.96051 1.21659 1.01130 0.94831 0.96207 1.21132 0.99286 0.95561 0.94911 0.93379 1.21733 1.00677 0.95908 1.01414 1.22179 0.95088 0.90373 0.98750 0.88930 0.93165 0.90189 0.90988 0.91593 0.89099 0.95897 0.98739 0.92407 0.93191 0.90306 0.91745 0.92172 0.91882 0.90957 0.91014 0.91596 0.91217 0.94179 0.92840 0.93851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.91 8.20 71.98 0.59 -3.32 16 2 C 0.08 2.28 1.93 44.17 0.09 2.37 16 3 H 0.12 3.03 6.23 -2.39 -0.01 3.02 16 4 C 0.50 21.86 6.84 87.66 0.60 22.46 16 5 O -0.58 -31.62 13.86 -3.03 -0.04 -31.66 16 6 N -0.61 -26.82 2.86 -851.13 -2.43 -29.25 16 7 C 0.08 2.36 9.35 127.77 1.20 3.56 16 8 C 0.26 14.65 5.16 85.63 0.44 15.09 16 9 C -0.54 -32.32 9.39 25.60 0.24 -32.08 16 10 H 0.05 3.00 7.81 -2.91 -0.02 2.97 16 11 C 0.01 0.48 5.46 84.66 0.46 0.94 16 12 N -0.93 -57.53 13.29 21.45 0.28 -57.25 16 13 Si 0.97 46.20 29.54 68.60 2.03 48.22 16 14 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 15 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 16 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 17 N -0.54 -16.47 4.36 -875.53 -3.82 -20.29 16 18 C 0.06 1.34 4.51 86.33 0.39 1.73 16 19 C -0.09 -1.79 2.88 -10.74 -0.03 -1.82 16 20 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 21 C -0.14 -1.88 9.20 71.98 0.66 -1.21 16 22 C -0.10 -1.96 4.57 30.68 0.14 -1.82 16 23 C -0.09 -2.35 2.88 -10.74 -0.03 -2.38 16 24 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 25 C -0.14 -3.10 9.20 71.98 0.66 -2.44 16 26 C 0.06 1.94 3.45 86.33 0.30 2.23 16 27 H 0.09 1.57 7.09 -2.39 -0.02 1.55 16 28 H 0.05 1.32 6.45 -2.39 -0.02 1.31 16 29 H 0.08 1.67 6.47 -2.39 -0.02 1.65 16 30 H 0.07 1.78 7.45 -2.39 -0.02 1.77 16 31 H 0.07 2.11 8.07 -2.39 -0.02 2.09 16 32 H 0.09 2.11 6.02 -2.38 -0.01 2.10 16 33 H 0.02 1.29 8.07 -2.39 -0.02 1.27 16 34 H -0.01 -0.36 7.42 -2.39 -0.02 -0.37 16 35 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 36 H 0.05 0.90 7.13 -2.39 -0.02 0.88 16 37 H 0.08 1.57 7.95 -2.39 -0.02 1.55 16 38 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 44 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.05 2.13 5.87 -2.38 -0.01 2.12 16 47 H 0.04 1.14 6.59 -2.39 -0.02 1.13 16 Total: -1.00 -76.37 356.59 2.64 -73.73 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: 0.92 Total: 13.20 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: 5.70 Total: 3.30 kcal Atomic # 7 Polarization: -100.83 SS G_CDS: -5.96 Total: -106.79 kcal Atomic # 8 Polarization: -31.62 SS G_CDS: -0.04 Total: -31.66 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.22 kcal Total: -76.37 2.64 -73.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052869738.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.001 kcal (2) G-P(sol) polarization free energy of solvation -76.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds