Wall clock time and date at job start Tue Mar 31 2020 06:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47161 * 2 1 4 4 C 1.50705 * 109.46982 * 119.99801 * 2 1 3 5 5 O 1.21281 * 119.99685 * 95.47568 * 4 2 1 6 6 N 1.34770 * 120.00170 * 275.47057 * 4 2 1 7 7 C 1.46504 * 120.00062 * 355.37602 * 6 4 2 8 8 C 1.46504 * 120.00229 * 175.37202 * 6 4 2 9 9 C 1.50706 * 109.46881 * 90.00129 * 8 6 4 10 10 H 1.07998 * 119.99882 * 0.02562 * 9 8 6 11 11 C 1.37872 * 119.99905 * 179.97438 * 9 8 6 12 12 N 1.31515 * 120.00230 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99832 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47065 * 180.02562 * 13 11 9 15 15 H 1.48502 * 109.47353 * 299.99914 * 13 11 9 16 16 H 1.48493 * 109.47491 * 60.00456 * 13 11 9 17 17 N 1.46900 * 109.47310 * 239.99833 * 2 1 3 18 18 C 1.46844 * 110.99775 * 179.76037 * 17 2 1 19 19 C 1.53042 * 109.51920 * 174.16292 * 18 17 2 20 20 H 1.09001 * 109.53403 * 179.14374 * 19 18 17 21 21 C 1.53001 * 109.50208 * 299.23659 * 19 18 17 22 22 C 1.53113 * 109.27948 * 59.17749 * 19 18 17 23 23 C 1.53118 * 109.16301 * 302.34651 * 22 19 18 24 24 H 1.08996 * 109.53425 * 297.69191 * 23 22 19 25 25 C 1.52999 * 109.50327 * 177.59398 * 23 22 19 26 26 C 1.46847 * 110.99665 * 55.55147 * 17 2 1 27 27 H 1.08997 * 109.47120 * 293.64234 * 1 2 3 28 28 H 1.08999 * 109.47503 * 53.64886 * 1 2 3 29 29 H 1.09007 * 109.47165 * 173.64950 * 1 2 3 30 30 H 1.08998 * 109.47181 * 275.44053 * 7 6 4 31 31 H 1.09002 * 109.47095 * 35.44139 * 7 6 4 32 32 H 1.09000 * 109.47037 * 155.43779 * 7 6 4 33 33 H 1.08998 * 109.46722 * 330.00509 * 8 6 4 34 34 H 1.08998 * 109.47390 * 210.00104 * 8 6 4 35 35 H 0.97004 * 119.99592 * 359.97438 * 12 11 9 36 36 H 1.08994 * 109.46308 * 294.17467 * 18 17 2 37 37 H 1.09001 * 109.46610 * 54.14832 * 18 17 2 38 38 H 1.09005 * 109.46627 * 179.80629 * 21 19 18 39 39 H 1.08997 * 109.47357 * 299.80395 * 21 19 18 40 40 H 1.09001 * 109.47171 * 59.80736 * 21 19 18 41 41 H 1.09000 * 109.52482 * 182.43771 * 22 19 18 42 42 H 1.09010 * 109.52248 * 62.25338 * 22 19 18 43 43 H 1.09004 * 109.47364 * 300.19714 * 25 23 22 44 44 H 1.09003 * 109.47467 * 60.19614 * 25 23 22 45 45 H 1.08999 * 109.47492 * 180.19511 * 25 23 22 46 46 H 1.09000 * 109.46330 * 305.85160 * 26 17 2 47 47 H 1.08998 * 109.46127 * 65.82584 * 26 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.3289 -1.8850 1.1740 6 7 2.1520 -0.0404 2.3938 7 6 1.8912 1.4005 2.4394 8 6 2.5429 -0.7530 3.6127 9 6 4.0443 -0.7407 3.7421 10 1 4.6470 -0.2508 2.9918 11 6 4.6484 -1.3541 4.8191 12 7 3.9145 -1.9503 5.7331 13 14 6.5094 -1.3382 4.9799 14 1 6.9056 -2.0606 6.2154 15 1 7.1139 -2.0077 3.8002 16 1 6.9881 0.0656 5.0517 17 7 2.0197 -0.6925 -1.1994 18 6 3.4876 -0.7071 -1.2361 19 6 3.9612 -1.5582 -2.4166 20 1 5.0506 -1.5568 -2.4531 21 6 3.4577 -2.9930 -2.2462 22 6 3.4052 -0.9725 -3.7174 23 6 1.8771 -0.9235 -3.6339 24 1 1.4851 -1.9355 -3.5321 25 6 1.3162 -0.2840 -4.9056 26 6 1.4640 -0.0908 -2.4182 27 1 -0.3633 0.4121 0.9414 28 1 -0.3634 0.6091 -0.8276 29 1 -0.3634 -1.0214 -0.1137 30 1 2.7910 1.9420 2.1476 31 1 1.0811 1.6450 1.7523 32 1 1.6074 1.6864 3.4522 33 1 2.1912 -1.7833 3.5598 34 1 2.0995 -0.2617 4.4788 35 1 2.9480 -1.9581 5.6498 36 1 3.8581 0.3115 -1.3511 37 1 3.8700 -1.1298 -0.3070 38 1 3.7925 -3.5979 -3.0890 39 1 3.8538 -3.4095 -1.3201 40 1 2.3684 -2.9937 -2.2084 41 1 3.7042 -1.6003 -4.5567 42 1 3.7948 0.0358 -3.8587 43 1 1.7097 0.7274 -5.0077 44 1 1.6108 -0.8775 -5.7711 45 1 0.2286 -0.2462 -4.8441 46 1 0.3765 -0.0659 -2.3477 47 1 1.8441 0.9249 -2.5276 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052869741.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:14 Heat of formation + Delta-G solvation = -44.515856 kcal Electronic energy + Delta-G solvation = -24123.414622 eV Core-core repulsion = 20919.650155 eV Total energy + Delta-G solvation = -3203.764467 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.11555 -38.48886 -35.06626 -34.69355 -33.13942 -32.77684 -30.25963 -27.54911 -26.82681 -26.55756 -25.74906 -24.56684 -23.21202 -21.49849 -21.30083 -18.69283 -18.38964 -16.98375 -16.57173 -16.20343 -15.04802 -14.84587 -14.79095 -14.25611 -13.99041 -13.93548 -13.73783 -13.55368 -13.34103 -12.79374 -12.55247 -12.34506 -12.28388 -12.02316 -11.88391 -11.84544 -11.63413 -11.51275 -11.32251 -11.23750 -11.11559 -10.87898 -10.80307 -10.56514 -10.47386 -10.17967 -10.08763 -9.99784 -9.09077 -8.82387 -8.36544 -8.06441 -7.57746 -6.36250 -4.07770 3.35436 3.43955 3.48264 3.64897 3.69003 4.14238 4.55429 4.67218 4.78301 4.82683 4.99685 5.15060 5.24786 5.28281 5.31823 5.38948 5.41324 5.46434 5.50974 5.56775 5.57798 5.69178 5.71107 5.77182 5.83721 5.86323 5.89028 5.99691 6.02212 6.07565 6.08951 6.11242 6.24749 6.33037 6.35658 6.51483 6.76940 6.80064 7.09524 7.19207 7.27985 7.45141 8.06376 8.33175 8.45522 8.80311 9.09576 9.61653 11.01023 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020987 B = 0.004882 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.857347 B = 5733.689670 C = 6528.390156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.065 3.935 3 H 0.053 0.947 4 C 0.510 3.490 5 O -0.516 6.516 6 N -0.602 5.602 7 C 0.086 3.914 8 C 0.238 3.762 9 C -0.603 4.603 10 H 0.049 0.951 11 C 0.020 3.980 12 N -0.910 5.910 13 Si 1.070 2.930 14 H -0.281 1.281 15 H -0.288 1.288 16 H -0.289 1.289 17 N -0.510 5.510 18 C 0.057 3.943 19 C -0.085 4.085 20 H 0.069 0.931 21 C -0.135 4.135 22 C -0.110 4.110 23 C -0.090 4.090 24 H 0.083 0.917 25 C -0.145 4.145 26 C 0.059 3.941 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.046 0.954 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.032 0.968 34 H 0.020 0.980 35 H 0.267 0.733 36 H 0.024 0.976 37 H 0.090 0.910 38 H 0.039 0.961 39 H 0.056 0.944 40 H 0.069 0.931 41 H 0.061 0.939 42 H 0.055 0.945 43 H 0.051 0.949 44 H 0.055 0.945 45 H 0.054 0.946 46 H 0.077 0.923 47 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.038 6.972 -18.277 20.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.047 4.047 3 H 0.071 0.929 4 C 0.295 3.705 5 O -0.391 6.391 6 N -0.336 5.336 7 C -0.058 4.058 8 C 0.118 3.882 9 C -0.641 4.641 10 H 0.068 0.932 11 C -0.184 4.184 12 N -0.546 5.546 13 Si 0.898 3.102 14 H -0.206 1.206 15 H -0.214 1.214 16 H -0.215 1.215 17 N -0.235 5.235 18 C -0.071 4.071 19 C -0.104 4.104 20 H 0.087 0.913 21 C -0.192 4.192 22 C -0.147 4.147 23 C -0.109 4.109 24 H 0.101 0.899 25 C -0.203 4.203 26 C -0.069 4.069 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.050 0.950 34 H 0.038 0.962 35 H 0.077 0.923 36 H 0.042 0.958 37 H 0.108 0.892 38 H 0.058 0.942 39 H 0.075 0.925 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.095 0.905 47 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -4.781 5.344 -17.281 18.710 hybrid contribution -0.889 1.648 -0.948 2.100 sum -5.671 6.993 -18.230 20.332 Atomic orbital electron populations 1.21790 0.92598 1.03404 1.01924 1.21623 0.96817 0.95783 0.90438 0.92912 1.20075 0.78996 0.87595 0.83818 1.90672 1.48408 1.16064 1.83972 1.47969 1.67312 1.08078 1.10202 1.21640 0.99613 0.82325 1.02248 1.19328 0.96210 0.92428 0.80200 1.22221 0.91490 1.39496 1.10937 0.93244 1.25786 1.07116 0.93068 0.92479 1.70807 1.07479 1.41144 1.35213 0.83525 0.74133 0.76246 0.76265 1.20648 1.21405 1.21522 1.61603 1.08334 1.53454 1.00140 1.22204 0.86854 0.97594 1.00426 1.21113 0.99222 0.96361 0.93702 0.91271 1.21700 1.02646 0.94227 1.00656 1.21687 0.95116 1.00427 0.97509 1.21193 0.95724 1.00484 0.93505 0.89906 1.21794 1.00704 1.00545 0.97217 1.22212 0.99907 0.95318 0.89458 0.91719 0.91927 0.90941 0.93496 0.92661 0.91256 0.95018 0.96213 0.92274 0.95778 0.89151 0.94159 0.92465 0.91250 0.92023 0.92614 0.92991 0.92594 0.92709 0.90483 0.95395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 8.33 37.16 0.31 -1.49 16 2 C 0.07 1.03 1.64 -68.86 -0.11 0.92 16 3 H 0.05 0.78 6.84 -51.93 -0.36 0.42 16 4 C 0.51 10.80 5.86 -10.99 -0.06 10.74 16 5 O -0.52 -13.19 15.02 5.56 0.08 -13.11 16 6 N -0.60 -13.02 2.86 -182.95 -0.52 -13.55 16 7 C 0.09 1.41 9.85 59.85 0.59 2.00 16 8 C 0.24 6.28 4.48 -5.19 -0.02 6.26 16 9 C -0.60 -17.50 9.39 -34.44 -0.32 -17.82 16 10 H 0.05 1.46 7.81 -52.49 -0.41 1.05 16 11 C 0.02 0.57 5.46 -17.82 -0.10 0.48 16 12 N -0.91 -28.05 13.65 55.43 0.76 -27.30 16 13 Si 1.07 25.95 29.90 -169.99 -5.08 20.87 16 14 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 15 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 17 N -0.51 -7.79 3.51 -228.08 -0.80 -8.59 16 18 C 0.06 0.92 4.58 -3.83 -0.02 0.90 16 19 C -0.09 -1.16 3.21 -90.54 -0.29 -1.45 16 20 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 21 C -0.14 -1.95 8.75 37.16 0.33 -1.63 16 22 C -0.11 -1.21 4.79 -26.61 -0.13 -1.34 16 23 C -0.09 -0.96 2.53 -90.54 -0.23 -1.19 16 24 H 0.08 0.96 6.59 -51.93 -0.34 0.62 16 25 C -0.14 -1.20 9.20 37.16 0.34 -0.86 16 26 C 0.06 0.70 4.41 -3.83 -0.02 0.68 16 27 H 0.06 0.80 7.17 -51.93 -0.37 0.43 16 28 H 0.06 0.64 6.59 -51.93 -0.34 0.29 16 29 H 0.07 1.02 8.14 -51.92 -0.42 0.60 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.71 5.58 -51.93 -0.29 0.42 16 32 H 0.07 1.09 7.83 -51.93 -0.41 0.68 16 33 H 0.03 0.93 7.36 -51.93 -0.38 0.55 16 34 H 0.02 0.52 7.72 -51.93 -0.40 0.12 16 35 H 0.27 8.17 7.22 -40.82 -0.29 7.87 16 36 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.09 1.84 6.16 -51.93 -0.32 1.52 16 38 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.07 1.06 6.01 -51.93 -0.31 0.75 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 43 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.08 0.83 6.04 -51.93 -0.31 0.52 16 47 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 355.36 15.07 5.36 5.36 Total: -1.00 -33.27 355.36 -8.36 -41.63 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -8.41 Total: -1.51 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: 0.26 Total: -3.81 kcal Atomic # 7 Polarization: -48.86 SS G_CDS: -0.57 Total: -49.43 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: 0.08 Total: -13.11 kcal Atomic # 14 Polarization: 25.95 SS G_CDS: -5.08 Total: 20.87 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.27 -8.36 -41.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052869741.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.883 kcal (2) G-P(sol) polarization free energy of solvation -33.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds