Wall clock time and date at job start Tue Mar 31 2020 06:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47400 * 2 1 4 4 C 1.50702 * 109.46823 * 119.99797 * 2 1 3 5 5 O 1.21283 * 120.00233 * 94.69678 * 4 2 1 6 6 N 1.34779 * 119.99757 * 274.69585 * 4 2 1 7 7 C 1.46497 * 120.00068 * 4.59495 * 6 4 2 8 8 C 1.46504 * 119.99941 * 184.60070 * 6 4 2 9 9 C 1.50697 * 109.47056 * 269.99793 * 8 6 4 10 10 H 1.08007 * 119.99859 * 0.02562 * 9 8 6 11 11 C 1.37879 * 120.00415 * 179.97438 * 9 8 6 12 12 N 1.31506 * 120.00297 * 180.02562 * 11 9 8 13 13 Si 1.86808 * 119.99504 * 0.02562 * 11 9 8 14 14 H 1.48499 * 109.46809 * 90.00026 * 13 11 9 15 15 H 1.48499 * 109.46604 * 209.99901 * 13 11 9 16 16 H 1.48498 * 109.46820 * 329.99842 * 13 11 9 17 17 N 1.46895 * 109.47119 * 239.99492 * 2 1 3 18 18 C 1.46841 * 111.00034 * 181.62082 * 17 2 1 19 19 C 1.53037 * 109.52511 * 174.15879 * 18 17 2 20 20 H 1.08995 * 109.50825 * 299.24033 * 19 18 17 21 21 C 1.53002 * 109.53926 * 179.13596 * 19 18 17 22 22 C 1.53119 * 109.27644 * 59.18108 * 19 18 17 23 23 C 1.53128 * 109.16130 * 302.34488 * 22 19 18 24 24 H 1.08996 * 109.50319 * 177.59815 * 23 22 19 25 25 C 1.53003 * 109.53221 * 297.69635 * 23 22 19 26 26 C 1.46846 * 110.99941 * 57.41005 * 17 2 1 27 27 H 1.09006 * 109.47317 * 293.10075 * 1 2 3 28 28 H 1.08996 * 109.47021 * 53.09855 * 1 2 3 29 29 H 1.08995 * 109.47654 * 173.09928 * 1 2 3 30 30 H 1.08994 * 109.47685 * 269.68605 * 7 6 4 31 31 H 1.09004 * 109.47131 * 29.69569 * 7 6 4 32 32 H 1.09006 * 109.46961 * 149.69077 * 7 6 4 33 33 H 1.09005 * 109.47119 * 29.99738 * 8 6 4 34 34 H 1.08999 * 109.47371 * 149.99975 * 8 6 4 35 35 H 0.97005 * 120.00118 * 180.02562 * 12 11 9 36 36 H 1.09002 * 109.46575 * 294.17903 * 18 17 2 37 37 H 1.09001 * 109.46631 * 54.14642 * 18 17 2 38 38 H 1.08999 * 109.47327 * 300.18092 * 21 19 18 39 39 H 1.09007 * 109.46710 * 60.18350 * 21 19 18 40 40 H 1.09002 * 109.47449 * 180.17631 * 21 19 18 41 41 H 1.08998 * 109.52445 * 182.43988 * 22 19 18 42 42 H 1.08994 * 109.52628 * 62.24854 * 22 19 18 43 43 H 1.08999 * 109.46765 * 179.82390 * 25 23 22 44 44 H 1.08998 * 109.47173 * 299.81872 * 25 23 22 45 45 H 1.08991 * 109.47163 * 59.82142 * 25 23 22 46 46 H 1.09002 * 109.46496 * 305.85633 * 26 17 2 47 47 H 1.08997 * 109.46107 * 65.82594 * 26 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 8 2.3155 -1.8885 1.1775 6 7 2.1667 -0.0365 2.3900 7 6 1.7305 1.3591 2.4809 8 6 2.7493 -0.6995 3.5593 9 6 1.6556 -1.3573 4.3605 10 1 0.6292 -1.2887 4.0314 11 6 1.9652 -2.0476 5.5132 12 7 1.0108 -2.6221 6.2121 13 14 3.7405 -2.1668 6.0821 14 1 4.0507 -1.0245 6.9788 15 1 3.9402 -3.4416 6.8171 16 1 4.6418 -2.1291 4.9025 17 7 2.0196 -0.6926 -1.1993 18 6 3.4870 -0.7458 -1.2140 19 6 3.9561 -1.5968 -2.3963 20 1 3.5688 -2.6102 -2.2917 21 6 5.4854 -1.6348 -2.4245 22 6 3.4360 -0.9827 -3.6990 23 6 1.9085 -0.8941 -3.6381 24 1 1.5352 -0.4185 -4.5450 25 6 1.3188 -2.3009 -3.5190 26 6 1.4989 -0.0635 -2.4198 27 1 -0.3634 0.4032 0.9453 28 1 -0.3633 0.6170 -0.8218 29 1 -0.3634 -1.0201 -0.1235 30 1 2.5594 2.0167 2.2194 31 1 0.9025 1.5266 1.7921 32 1 1.4049 1.5724 3.4991 33 1 3.4633 -1.4547 3.2306 34 1 3.2598 0.0381 4.1785 35 1 1.2286 -3.1074 7.0233 36 1 3.8862 0.2637 -1.3122 37 1 3.8438 -1.1884 -0.2840 38 1 5.8722 -0.6210 -2.5279 39 1 5.8551 -2.0721 -1.4970 40 1 5.8184 -2.2386 -3.2688 41 1 3.7312 -1.6095 -4.5405 42 1 3.8541 0.0161 -3.8233 43 1 0.2317 -2.2363 -3.4726 44 1 1.6109 -2.8919 -4.3870 45 1 1.6936 -2.7764 -2.6128 46 1 0.4115 -0.0104 -2.3654 47 1 1.9073 0.9428 -2.5123 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052869743.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:17 Heat of formation + Delta-G solvation = -36.460965 kcal Electronic energy + Delta-G solvation = -24058.289326 eV Core-core repulsion = 20854.874144 eV Total energy + Delta-G solvation = -3203.415181 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.15008 -38.51983 -35.03763 -34.73053 -33.07619 -32.49743 -30.45099 -28.36652 -26.88203 -26.58346 -25.95087 -24.51930 -23.18992 -21.69933 -20.73727 -18.76526 -18.28395 -16.92022 -16.62023 -16.17321 -15.38821 -14.97258 -14.56756 -14.50571 -14.03440 -14.00591 -13.81565 -13.47751 -13.02749 -12.83657 -12.81110 -12.34213 -12.24451 -12.16377 -11.90035 -11.84895 -11.59468 -11.53935 -11.38036 -11.34060 -11.18533 -10.95655 -10.85916 -10.51608 -10.49647 -10.20100 -10.12038 -10.01548 -9.50402 -8.83782 -8.56806 -8.09148 -7.65093 -6.05946 -4.04161 3.27985 3.35654 3.37333 3.40574 3.63086 4.13580 4.41853 4.66092 4.75801 4.83813 4.98603 5.09412 5.23064 5.25482 5.28774 5.32519 5.43951 5.49222 5.56111 5.58817 5.61826 5.71305 5.72089 5.73660 5.82635 5.84338 5.87338 5.93666 5.95607 6.07543 6.10994 6.14616 6.19411 6.32213 6.34457 6.44012 6.61539 6.67091 6.95922 7.15097 7.24200 7.39232 7.64052 8.29667 8.50307 8.97242 9.06459 9.54594 11.07613 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022066 B = 0.004685 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.613313 B = 5975.429389 C = 6468.632263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.068 3.932 3 H 0.053 0.947 4 C 0.512 3.488 5 O -0.517 6.517 6 N -0.601 5.601 7 C 0.080 3.920 8 C 0.218 3.782 9 C -0.525 4.525 10 H 0.074 0.926 11 C 0.072 3.928 12 N -0.898 5.898 13 Si 0.874 3.126 14 H -0.276 1.276 15 H -0.284 1.284 16 H -0.265 1.265 17 N -0.511 5.511 18 C 0.059 3.941 19 C -0.088 4.088 20 H 0.084 0.916 21 C -0.146 4.146 22 C -0.110 4.110 23 C -0.087 4.087 24 H 0.068 0.932 25 C -0.141 4.141 26 C 0.058 3.942 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.042 0.958 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.039 0.961 34 H 0.024 0.976 35 H 0.264 0.736 36 H 0.024 0.976 37 H 0.086 0.914 38 H 0.050 0.950 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.061 0.939 42 H 0.055 0.945 43 H 0.049 0.951 44 H 0.043 0.957 45 H 0.075 0.925 46 H 0.079 0.921 47 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.483 8.671 -19.217 21.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.044 4.044 3 H 0.071 0.929 4 C 0.297 3.703 5 O -0.391 6.391 6 N -0.334 5.334 7 C -0.064 4.064 8 C 0.097 3.903 9 C -0.564 4.564 10 H 0.092 0.908 11 C -0.130 4.130 12 N -0.537 5.537 13 Si 0.701 3.299 14 H -0.202 1.202 15 H -0.209 1.209 16 H -0.189 1.189 17 N -0.236 5.236 18 C -0.069 4.069 19 C -0.107 4.107 20 H 0.102 0.898 21 C -0.203 4.203 22 C -0.148 4.148 23 C -0.105 4.105 24 H 0.087 0.913 25 C -0.198 4.198 26 C -0.070 4.070 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.057 0.943 34 H 0.042 0.958 35 H 0.074 0.926 36 H 0.042 0.958 37 H 0.105 0.895 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.062 0.938 45 H 0.094 0.906 46 H 0.097 0.903 47 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 3.435 7.444 -19.035 20.725 hybrid contribution 1.066 0.889 0.536 1.488 sum 4.501 8.333 -18.499 20.783 Atomic orbital electron populations 1.21817 0.92329 1.03675 1.02075 1.21606 0.97200 0.95514 0.90100 0.92938 1.20101 0.79003 0.87395 0.83817 1.90674 1.48941 1.14972 1.84543 1.47859 1.61687 1.12085 1.11810 1.21719 0.98559 0.82731 1.03353 1.19634 0.94931 0.92884 0.82843 1.21328 0.94844 1.33057 1.07171 0.90763 1.24856 0.97090 0.94801 0.96270 1.69895 1.32220 1.35054 1.16498 0.86873 0.85864 0.77903 0.79249 1.20155 1.20941 1.18921 1.61588 1.09085 1.52733 1.00180 1.22213 0.86842 0.97759 1.00096 1.21159 0.94916 1.00746 0.93854 0.89755 1.21788 0.95303 1.01379 1.01876 1.21691 0.95125 1.00437 0.97540 1.21144 0.95521 0.97173 0.96706 0.91324 1.21769 1.00237 0.95596 1.02226 1.22191 1.00329 0.94855 0.89624 0.91309 0.92058 0.90735 0.93958 0.92031 0.90507 0.94348 0.95803 0.92610 0.95797 0.89531 0.93118 0.92383 0.92670 0.92015 0.92592 0.93187 0.93755 0.90593 0.90293 0.95396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 8.33 37.16 0.31 -1.64 16 2 C 0.07 1.04 1.64 -68.87 -0.11 0.93 16 3 H 0.05 0.72 7.11 -51.93 -0.37 0.35 16 4 C 0.51 10.56 5.82 -10.98 -0.06 10.50 16 5 O -0.52 -12.91 14.92 5.56 0.08 -12.83 16 6 N -0.60 -12.53 2.86 -182.95 -0.52 -13.05 16 7 C 0.08 1.25 9.80 59.85 0.59 1.84 16 8 C 0.22 5.38 4.20 -5.19 -0.02 5.36 16 9 C -0.53 -15.26 9.94 -34.44 -0.34 -15.60 16 10 H 0.07 2.37 8.06 -52.48 -0.42 1.95 16 11 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 12 N -0.90 -27.97 13.96 55.43 0.77 -27.19 16 13 Si 0.87 21.73 27.47 -169.99 -4.67 17.06 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 16 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 17 N -0.51 -7.48 3.54 -228.09 -0.81 -8.28 16 18 C 0.06 0.85 4.40 -3.84 -0.02 0.84 16 19 C -0.09 -1.08 2.53 -90.54 -0.23 -1.31 16 20 H 0.08 1.17 6.58 -51.93 -0.34 0.82 16 21 C -0.15 -1.57 9.20 37.16 0.34 -1.23 16 22 C -0.11 -1.13 4.79 -26.60 -0.13 -1.25 16 23 C -0.09 -0.89 3.21 -90.53 -0.29 -1.18 16 24 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 25 C -0.14 -1.57 8.76 37.16 0.33 -1.25 16 26 C 0.06 0.66 4.60 -3.83 -0.02 0.65 16 27 H 0.07 0.96 6.68 -51.93 -0.35 0.61 16 28 H 0.06 0.66 6.64 -51.93 -0.34 0.31 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.81 5.13 -51.93 -0.27 0.55 16 32 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 33 H 0.04 1.02 6.55 -51.93 -0.34 0.68 16 34 H 0.02 0.55 7.50 -51.93 -0.39 0.17 16 35 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 36 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 37 H 0.09 1.55 6.03 -51.93 -0.31 1.24 16 38 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 40 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.08 1.04 6.01 -51.93 -0.31 0.73 16 46 H 0.08 0.85 6.09 -51.93 -0.32 0.53 16 47 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 352.64 15.07 5.31 5.31 Total: -1.00 -33.38 352.64 -8.01 -41.39 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -8.42 Total: -1.09 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: 0.24 Total: -1.33 kcal Atomic # 7 Polarization: -47.97 SS G_CDS: -0.56 Total: -48.53 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.08 Total: -12.83 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.38 -8.01 -41.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052869743.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.929 kcal (2) G-P(sol) polarization free energy of solvation -33.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds