Wall clock time and date at job start Tue Mar 31 2020 06:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47400 * 2 1 4 4 C 1.50702 * 109.46823 * 119.99797 * 2 1 3 5 5 O 1.21283 * 120.00233 * 94.69678 * 4 2 1 6 6 N 1.34779 * 119.99757 * 274.69585 * 4 2 1 7 7 C 1.46497 * 120.00068 * 4.59495 * 6 4 2 8 8 C 1.46504 * 119.99941 * 184.60070 * 6 4 2 9 9 C 1.50697 * 109.47056 * 269.99793 * 8 6 4 10 10 H 1.08007 * 119.99859 * 0.02562 * 9 8 6 11 11 C 1.37879 * 120.00415 * 179.97438 * 9 8 6 12 12 N 1.31506 * 120.00297 * 180.02562 * 11 9 8 13 13 Si 1.86808 * 119.99504 * 0.02562 * 11 9 8 14 14 H 1.48499 * 109.46809 * 90.00026 * 13 11 9 15 15 H 1.48499 * 109.46604 * 209.99901 * 13 11 9 16 16 H 1.48498 * 109.46820 * 329.99842 * 13 11 9 17 17 N 1.46895 * 109.47119 * 239.99492 * 2 1 3 18 18 C 1.46841 * 111.00034 * 181.62082 * 17 2 1 19 19 C 1.53037 * 109.52511 * 174.15879 * 18 17 2 20 20 H 1.08995 * 109.50825 * 299.24033 * 19 18 17 21 21 C 1.53002 * 109.53926 * 179.13596 * 19 18 17 22 22 C 1.53119 * 109.27644 * 59.18108 * 19 18 17 23 23 C 1.53128 * 109.16130 * 302.34488 * 22 19 18 24 24 H 1.08996 * 109.50319 * 177.59815 * 23 22 19 25 25 C 1.53003 * 109.53221 * 297.69635 * 23 22 19 26 26 C 1.46846 * 110.99941 * 57.41005 * 17 2 1 27 27 H 1.09006 * 109.47317 * 293.10075 * 1 2 3 28 28 H 1.08996 * 109.47021 * 53.09855 * 1 2 3 29 29 H 1.08995 * 109.47654 * 173.09928 * 1 2 3 30 30 H 1.08994 * 109.47685 * 269.68605 * 7 6 4 31 31 H 1.09004 * 109.47131 * 29.69569 * 7 6 4 32 32 H 1.09006 * 109.46961 * 149.69077 * 7 6 4 33 33 H 1.09005 * 109.47119 * 29.99738 * 8 6 4 34 34 H 1.08999 * 109.47371 * 149.99975 * 8 6 4 35 35 H 0.97005 * 120.00118 * 180.02562 * 12 11 9 36 36 H 1.09002 * 109.46575 * 294.17903 * 18 17 2 37 37 H 1.09001 * 109.46631 * 54.14642 * 18 17 2 38 38 H 1.08999 * 109.47327 * 300.18092 * 21 19 18 39 39 H 1.09007 * 109.46710 * 60.18350 * 21 19 18 40 40 H 1.09002 * 109.47449 * 180.17631 * 21 19 18 41 41 H 1.08998 * 109.52445 * 182.43988 * 22 19 18 42 42 H 1.08994 * 109.52628 * 62.24854 * 22 19 18 43 43 H 1.08999 * 109.46765 * 179.82390 * 25 23 22 44 44 H 1.08998 * 109.47173 * 299.81872 * 25 23 22 45 45 H 1.08991 * 109.47163 * 59.82142 * 25 23 22 46 46 H 1.09002 * 109.46496 * 305.85633 * 26 17 2 47 47 H 1.08997 * 109.46107 * 65.82594 * 26 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 8 2.3155 -1.8885 1.1775 6 7 2.1667 -0.0365 2.3900 7 6 1.7305 1.3591 2.4809 8 6 2.7493 -0.6995 3.5593 9 6 1.6556 -1.3573 4.3605 10 1 0.6292 -1.2887 4.0314 11 6 1.9652 -2.0476 5.5132 12 7 1.0108 -2.6221 6.2121 13 14 3.7405 -2.1668 6.0821 14 1 4.0507 -1.0245 6.9788 15 1 3.9402 -3.4416 6.8171 16 1 4.6418 -2.1291 4.9025 17 7 2.0196 -0.6926 -1.1993 18 6 3.4870 -0.7458 -1.2140 19 6 3.9561 -1.5968 -2.3963 20 1 3.5688 -2.6102 -2.2917 21 6 5.4854 -1.6348 -2.4245 22 6 3.4360 -0.9827 -3.6990 23 6 1.9085 -0.8941 -3.6381 24 1 1.5352 -0.4185 -4.5450 25 6 1.3188 -2.3009 -3.5190 26 6 1.4989 -0.0635 -2.4198 27 1 -0.3634 0.4032 0.9453 28 1 -0.3633 0.6170 -0.8218 29 1 -0.3634 -1.0201 -0.1235 30 1 2.5594 2.0167 2.2194 31 1 0.9025 1.5266 1.7921 32 1 1.4049 1.5724 3.4991 33 1 3.4633 -1.4547 3.2306 34 1 3.2598 0.0381 4.1785 35 1 1.2286 -3.1074 7.0233 36 1 3.8862 0.2637 -1.3122 37 1 3.8438 -1.1884 -0.2840 38 1 5.8722 -0.6210 -2.5279 39 1 5.8551 -2.0721 -1.4970 40 1 5.8184 -2.2386 -3.2688 41 1 3.7312 -1.6095 -4.5405 42 1 3.8541 0.0161 -3.8233 43 1 0.2317 -2.2363 -3.4726 44 1 1.6109 -2.8919 -4.3870 45 1 1.6936 -2.7764 -2.6128 46 1 0.4115 -0.0104 -2.3654 47 1 1.9073 0.9428 -2.5123 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052869743.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:16 Heat of formation + Delta-G solvation = -58.950469 kcal Electronic energy + Delta-G solvation = -24059.264544 eV Core-core repulsion = 20854.874144 eV Total energy + Delta-G solvation = -3204.390399 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.42103 -39.82697 -36.63956 -36.03342 -34.66224 -33.98525 -31.74180 -30.18754 -27.88778 -27.47903 -27.34182 -25.77972 -24.76084 -23.05360 -21.88511 -19.87678 -19.62523 -19.14155 -18.03245 -17.48952 -16.69457 -16.56370 -16.01074 -15.60907 -15.45867 -15.19881 -14.85902 -14.62667 -14.58430 -14.13667 -14.06675 -13.77655 -13.69652 -13.38821 -13.32583 -13.11604 -12.91627 -12.82656 -12.55938 -12.43413 -12.37508 -12.33577 -12.26863 -12.02626 -11.81574 -11.76573 -11.42050 -11.09394 -10.99868 -10.83029 -10.43765 -9.38716 -9.15002 -8.34685 -6.39416 1.29659 1.34707 1.45257 1.80137 2.21230 2.30188 2.93242 2.99336 3.60248 3.78104 3.88265 3.98951 4.09866 4.11552 4.21759 4.33696 4.34910 4.50112 4.55252 4.57927 4.60857 4.70744 4.73390 4.76471 4.82068 4.86415 4.89392 4.90571 4.91507 4.95025 4.96897 5.10651 5.20440 5.21735 5.23549 5.31816 5.41778 5.45074 5.49140 5.61699 5.68767 6.04057 6.23625 6.25839 6.61554 6.72324 7.21612 7.46944 8.82565 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022066 B = 0.004685 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.613313 B = 5975.429389 C = 6468.632263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.079 3.921 3 H 0.082 0.918 4 C 0.502 3.498 5 O -0.574 6.574 6 N -0.611 5.611 7 C 0.074 3.926 8 C 0.227 3.773 9 C -0.534 4.534 10 H 0.027 0.973 11 C 0.011 3.989 12 N -0.946 5.946 13 Si 0.948 3.052 14 H -0.249 1.249 15 H -0.282 1.282 16 H -0.258 1.258 17 N -0.531 5.531 18 C 0.063 3.937 19 C -0.087 4.087 20 H 0.058 0.942 21 C -0.142 4.142 22 C -0.104 4.104 23 C -0.085 4.085 24 H 0.097 0.903 25 C -0.138 4.138 26 C 0.056 3.944 27 H 0.065 0.935 28 H 0.102 0.898 29 H 0.048 0.952 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.015 0.985 34 H 0.048 0.952 35 H 0.268 0.732 36 H 0.037 0.963 37 H 0.042 0.958 38 H 0.063 0.937 39 H 0.038 0.962 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.050 0.950 44 H 0.055 0.945 45 H 0.041 0.959 46 H 0.088 0.912 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.675 11.383 -21.429 24.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.033 4.033 3 H 0.099 0.901 4 C 0.290 3.710 5 O -0.453 6.453 6 N -0.343 5.343 7 C -0.068 4.068 8 C 0.104 3.896 9 C -0.572 4.572 10 H 0.045 0.955 11 C -0.187 4.187 12 N -0.586 5.586 13 Si 0.771 3.229 14 H -0.173 1.173 15 H -0.207 1.207 16 H -0.183 1.183 17 N -0.257 5.257 18 C -0.065 4.065 19 C -0.105 4.105 20 H 0.076 0.924 21 C -0.199 4.199 22 C -0.141 4.141 23 C -0.103 4.103 24 H 0.115 0.885 25 C -0.195 4.195 26 C -0.071 4.071 27 H 0.083 0.917 28 H 0.121 0.879 29 H 0.067 0.933 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.087 0.913 33 H 0.033 0.967 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.055 0.945 37 H 0.060 0.940 38 H 0.082 0.918 39 H 0.057 0.943 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.069 0.931 44 H 0.074 0.926 45 H 0.060 0.940 46 H 0.106 0.894 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.608 10.216 -21.267 24.039 hybrid contribution 0.591 0.010 1.200 1.338 sum 5.199 10.226 -20.066 23.114 Atomic orbital electron populations 1.21816 0.91036 1.02958 1.03565 1.21542 0.97921 0.95909 0.87911 0.90065 1.21167 0.77652 0.87019 0.85171 1.90636 1.51303 1.17744 1.85601 1.47995 1.61470 1.14072 1.10796 1.22021 1.00836 0.80101 1.03843 1.19288 0.93253 0.93025 0.84029 1.21542 0.93971 1.33791 1.07912 0.95476 1.25855 1.02383 0.94144 0.96323 1.70052 1.34999 1.36240 1.17310 0.85708 0.79304 0.78801 0.79112 1.17299 1.20705 1.18267 1.61544 1.09167 1.53919 1.01058 1.22104 0.87060 0.98345 0.98961 1.21125 0.95794 0.99155 0.94467 0.92354 1.21761 0.94271 1.02322 1.01595 1.21657 0.95025 1.01181 0.96251 1.21196 0.95553 0.96277 0.97294 0.88496 1.21716 1.00238 0.96546 1.01037 1.22327 1.00822 0.95619 0.88285 0.91656 0.87938 0.93297 0.90463 0.89412 0.91313 0.96695 0.93375 0.92280 0.94461 0.93960 0.91804 0.94257 0.91087 0.90691 0.91156 0.93093 0.92556 0.94025 0.89418 0.93608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.55 8.33 71.98 0.60 -2.95 16 2 C 0.08 2.34 1.64 44.17 0.07 2.41 16 3 H 0.08 1.95 7.11 -2.39 -0.02 1.94 16 4 C 0.50 21.22 5.82 87.66 0.51 21.73 16 5 O -0.57 -30.47 14.92 -3.04 -0.05 -30.52 16 6 N -0.61 -25.61 2.86 -851.11 -2.43 -28.04 16 7 C 0.07 2.17 9.80 127.77 1.25 3.42 16 8 C 0.23 11.39 4.20 85.63 0.36 11.75 16 9 C -0.53 -32.26 9.94 25.60 0.25 -32.00 16 10 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 11 C 0.01 0.65 5.47 84.66 0.46 1.11 16 12 N -0.95 -60.94 13.96 21.45 0.30 -60.64 16 13 Si 0.95 45.40 27.47 68.60 1.88 47.28 16 14 H -0.25 -10.82 7.11 99.48 0.71 -10.11 16 15 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 16 H -0.26 -12.03 6.54 99.48 0.65 -11.38 16 17 N -0.53 -15.08 3.54 -875.54 -3.10 -18.17 16 18 C 0.06 1.82 4.40 86.33 0.38 2.20 16 19 C -0.09 -2.07 2.53 -10.74 -0.03 -2.10 16 20 H 0.06 1.69 6.58 -2.39 -0.02 1.67 16 21 C -0.14 -2.93 9.20 71.98 0.66 -2.27 16 22 C -0.10 -1.81 4.79 30.68 0.15 -1.66 16 23 C -0.08 -1.48 3.21 -10.74 -0.03 -1.52 16 24 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 25 C -0.14 -2.92 8.76 71.98 0.63 -2.29 16 26 C 0.06 1.11 4.60 86.33 0.40 1.51 16 27 H 0.06 1.74 6.68 -2.38 -0.02 1.72 16 28 H 0.10 1.83 6.64 -2.39 -0.02 1.81 16 29 H 0.05 1.52 8.14 -2.39 -0.02 1.51 16 30 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.09 2.09 5.13 -2.38 -0.01 2.08 16 32 H 0.07 2.13 8.07 -2.38 -0.02 2.11 16 33 H 0.01 0.82 6.55 -2.38 -0.02 0.81 16 34 H 0.05 2.18 7.50 -2.39 -0.02 2.16 16 35 H 0.27 16.03 8.31 -92.70 -0.77 15.26 16 36 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.04 1.59 6.03 -2.39 -0.01 1.57 16 38 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 40 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.04 1.17 6.01 -2.39 -0.01 1.16 16 46 H 0.09 1.57 6.09 -2.39 -0.01 1.56 16 47 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -78.74 352.64 3.14 -75.60 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: 0.86 Total: 15.15 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: 5.67 Total: -0.66 kcal Atomic # 7 Polarization: -101.63 SS G_CDS: -5.23 Total: -106.86 kcal Atomic # 8 Polarization: -30.47 SS G_CDS: -0.05 Total: -30.52 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.88 Total: 47.28 kcal Total: -78.74 3.14 -75.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052869743.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.645 kcal (2) G-P(sol) polarization free energy of solvation -78.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds