Wall clock time and date at job start Tue Mar 31 2020 06:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.50422 * 2 1 4 4 C 1.53093 * 109.50658 * 239.86874 * 2 1 3 5 5 N 1.47014 * 109.25783 * 183.21490 * 4 2 1 6 6 C 1.46907 * 110.99857 * 182.39348 * 5 4 2 7 7 C 1.53000 * 109.47140 * 52.19948 * 6 5 4 8 8 H 1.08996 * 110.36468 * 40.90356 * 7 6 5 9 9 C 1.54374 * 110.51434 * 278.48899 * 7 6 5 10 10 C 1.54262 * 105.06153 * 217.32007 * 9 7 6 11 11 C 1.54376 * 105.06053 * 359.97438 * 10 9 7 12 12 N 1.48555 * 110.41343 * 163.25391 * 7 6 5 13 13 C 1.46901 * 111.00063 * 277.93959 * 12 7 6 14 14 C 1.50703 * 109.46787 * 164.59035 * 13 12 7 15 15 H 1.07992 * 120.00562 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99792 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99920 * 359.73222 * 16 14 13 18 18 Si 1.86794 * 120.00269 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46986 * 0.02562 * 18 16 14 20 20 H 1.48492 * 109.47390 * 120.00008 * 18 16 14 21 21 H 1.48501 * 109.47105 * 240.00455 * 18 16 14 22 22 C 1.47013 * 110.75326 * 58.61967 * 5 4 2 23 23 C 1.53094 * 109.25825 * 301.38322 * 22 5 4 24 24 H 1.08995 * 109.50833 * 296.91533 * 23 22 5 25 25 C 1.52999 * 109.51268 * 176.82443 * 23 22 5 26 26 O 1.43016 * 109.50611 * 120.08738 * 2 1 3 27 27 H 1.08998 * 109.46931 * 299.91052 * 1 2 3 28 28 H 1.08996 * 109.46966 * 59.91039 * 1 2 3 29 29 H 1.09005 * 109.46950 * 179.91633 * 1 2 3 30 30 H 1.09006 * 109.50739 * 63.28089 * 4 2 1 31 31 H 1.08998 * 109.51207 * 303.15483 * 4 2 1 32 32 H 1.08997 * 109.47249 * 292.19788 * 6 5 4 33 33 H 1.09002 * 109.46777 * 172.19667 * 6 5 4 34 34 H 1.09007 * 110.32349 * 336.21496 * 9 7 6 35 35 H 1.08997 * 110.32710 * 98.41695 * 9 7 6 36 36 H 1.08999 * 110.32482 * 118.89414 * 10 9 7 37 37 H 1.09002 * 110.31949 * 240.99692 * 10 9 7 38 38 H 1.09001 * 110.41356 * 265.07789 * 11 10 9 39 39 H 1.08994 * 110.41189 * 142.63365 * 11 10 9 40 40 H 1.08999 * 109.47262 * 44.59354 * 13 12 7 41 41 H 1.08996 * 109.47196 * 284.59253 * 13 12 7 42 42 H 0.96999 * 120.00332 * 180.02562 * 17 16 14 43 43 H 1.09002 * 109.50789 * 61.31812 * 22 5 4 44 44 H 1.08993 * 109.50696 * 181.44646 * 22 5 4 45 45 H 1.09003 * 109.46850 * 59.99780 * 25 23 22 46 46 H 1.08994 * 109.47549 * 179.97438 * 25 23 22 47 47 H 1.09004 * 109.46947 * 300.00364 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0412 -0.7244 -1.2481 5 7 3.5093 -0.7889 -1.2041 6 6 4.0446 -1.4278 -2.4138 7 6 3.4684 -0.7384 -3.6522 8 1 3.4374 0.3411 -3.5055 9 6 2.0571 -1.2800 -3.9654 10 6 1.9815 -1.3351 -5.5052 11 6 3.3532 -0.8216 -5.9928 12 7 4.2738 -1.0749 -4.8544 13 6 5.4676 -0.2236 -4.9435 14 6 6.4391 -0.8222 -5.9278 15 1 6.1940 -1.7427 -6.4367 16 6 7.6404 -0.1941 -6.1796 17 7 7.9362 0.9302 -5.5647 18 14 8.8443 -0.9356 -7.4003 19 1 8.2755 -2.1892 -7.9572 20 1 9.0889 0.0288 -8.5025 21 1 10.1254 -1.2359 -6.7118 22 6 3.9640 -1.4884 0.0063 23 6 3.4335 -0.7564 1.2419 24 1 3.8534 0.2488 1.2777 25 6 3.8367 -1.5236 2.5027 26 8 2.0076 -0.6758 1.1664 27 1 -0.3633 0.5124 0.8908 28 1 -0.3633 0.5152 -0.8892 29 1 -0.3633 -1.0277 -0.0015 30 1 1.7273 -0.1803 -2.1389 31 1 1.6332 -1.7347 -1.2754 32 1 3.7660 -2.4815 -2.4218 33 1 5.1310 -1.3391 -2.4210 34 1 1.9324 -2.2777 -3.5443 35 1 1.2968 -0.6048 -3.5729 36 1 1.8196 -2.3598 -5.8398 37 1 1.1828 -0.6883 -5.8683 38 1 3.3038 0.2449 -6.2123 39 1 3.6761 -1.3773 -6.8732 40 1 5.9393 -0.1555 -3.9632 41 1 5.1791 0.7729 -5.2779 42 1 8.7812 1.3723 -5.7420 43 1 3.5867 -2.5110 -0.0008 44 1 5.0536 -1.5020 0.0312 45 1 4.9235 -1.5874 2.5573 46 1 3.4591 -1.0018 3.3820 47 1 3.4152 -2.5282 2.4671 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066961026.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:49 Heat of formation + Delta-G solvation = -36.586732 kcal Electronic energy + Delta-G solvation = -23649.262096 eV Core-core repulsion = 20445.841461 eV Total energy + Delta-G solvation = -3203.420635 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.00589 -38.36757 -35.50155 -33.82555 -33.05419 -30.99326 -30.64373 -29.29423 -26.95414 -26.23196 -25.61412 -22.70654 -22.19784 -21.84547 -20.52972 -19.94870 -19.42529 -16.65071 -16.49750 -16.16958 -15.46169 -15.23266 -14.86258 -14.72327 -14.35368 -14.01180 -13.83070 -13.09751 -12.92041 -12.85004 -12.73861 -12.53704 -12.23603 -12.12089 -12.09983 -11.91918 -11.70751 -11.38891 -11.18885 -11.03443 -10.95930 -10.61804 -10.59397 -10.48796 -10.29047 -10.23034 -10.05043 -9.78544 -9.47106 -9.18168 -8.40783 -8.19938 -7.41501 -6.00367 -4.01507 3.31810 3.39175 3.44377 3.59599 3.86678 4.44885 4.69177 4.85903 4.91086 4.99562 5.08108 5.10498 5.12788 5.19814 5.34101 5.35345 5.39915 5.43972 5.44754 5.55505 5.60832 5.65817 5.72382 5.81729 5.84417 5.86277 5.93366 5.96441 6.01278 6.07291 6.11185 6.15656 6.25872 6.44953 6.51684 6.59360 6.64440 7.07615 7.12797 7.20628 7.24923 7.34061 7.82206 8.02468 8.18385 8.53005 9.06901 9.62621 11.10381 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019730 B = 0.004266 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.835273 B = 6561.397267 C = 7563.156399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.088 3.912 3 H 0.065 0.935 4 C 0.012 3.988 5 N -0.536 5.536 6 C 0.075 3.925 7 C 0.061 3.939 8 H 0.053 0.947 9 C -0.123 4.123 10 C -0.127 4.127 11 C 0.046 3.954 12 N -0.502 5.502 13 C 0.183 3.817 14 C -0.503 4.503 15 H 0.063 0.937 16 C 0.054 3.946 17 N -0.899 5.899 18 Si 0.896 3.104 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.284 1.284 22 C 0.026 3.974 23 C 0.091 3.909 24 H 0.066 0.934 25 C -0.143 4.143 26 O -0.384 6.384 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.099 0.901 31 H 0.040 0.960 32 H 0.036 0.964 33 H 0.087 0.913 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.036 0.964 39 H 0.076 0.924 40 H 0.031 0.969 41 H -0.005 1.005 42 H 0.260 0.740 43 H 0.040 0.960 44 H 0.086 0.914 45 H 0.072 0.928 46 H 0.063 0.937 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.659 -3.026 11.608 18.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.030 3.970 3 H 0.083 0.917 4 C -0.116 4.116 5 N -0.261 5.261 6 C -0.053 4.053 7 C -0.048 4.048 8 H 0.070 0.930 9 C -0.161 4.161 10 C -0.165 4.165 11 C -0.083 4.083 12 N -0.227 5.227 13 C 0.057 3.943 14 C -0.541 4.541 15 H 0.081 0.919 16 C -0.147 4.147 17 N -0.539 5.539 18 Si 0.724 3.276 19 H -0.197 1.197 20 H -0.212 1.212 21 H -0.211 1.211 22 C -0.103 4.103 23 C 0.033 3.967 24 H 0.084 0.916 25 C -0.201 4.201 26 O -0.304 6.304 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.116 0.884 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.105 0.895 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.054 0.946 39 H 0.095 0.905 40 H 0.049 0.951 41 H 0.012 0.988 42 H 0.070 0.930 43 H 0.058 0.942 44 H 0.104 0.896 45 H 0.091 0.909 46 H 0.082 0.918 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.240 -3.044 11.769 17.975 hybrid contribution 0.502 -0.139 -0.969 1.100 sum -12.738 -3.183 10.800 17.001 Atomic orbital electron populations 1.21736 0.93073 1.02768 1.02468 1.22180 0.94510 0.95747 0.84566 0.91740 1.23225 0.88702 1.00126 0.99506 1.62247 1.08413 1.53084 1.02387 1.22047 1.00852 0.95184 0.87182 1.22536 0.92257 0.97800 0.92206 0.92951 1.22672 0.96551 1.00601 0.96244 1.22354 0.97627 1.01079 0.95425 1.22918 0.90822 0.98638 0.95885 1.65364 1.05095 1.53105 0.99133 1.19904 0.86506 0.90166 0.97706 1.21175 1.01055 1.08635 1.23271 0.91918 1.24992 0.98174 0.94985 0.96521 1.69975 1.23691 1.17235 1.42984 0.86464 0.80972 0.79165 0.80959 1.19685 1.21151 1.21052 1.22773 1.01293 0.95930 0.90288 1.22120 0.81181 0.99135 0.94303 0.91611 1.21738 1.01464 1.00583 0.96266 1.87932 1.21007 1.78547 1.42915 0.91793 0.90953 0.91999 0.88352 0.94224 0.94610 0.89500 0.91830 0.91779 0.91746 0.92284 0.94619 0.90512 0.95137 0.98752 0.93035 0.94215 0.89588 0.90866 0.91765 0.92007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.57 37.16 0.36 -0.99 16 2 C 0.09 1.06 3.43 -26.68 -0.09 0.97 16 3 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 4 C 0.01 0.16 3.65 -3.71 -0.01 0.15 16 5 N -0.54 -8.09 4.84 -234.31 -1.13 -9.23 16 6 C 0.07 1.28 5.05 -3.82 -0.02 1.26 16 7 C 0.06 1.10 1.74 -66.08 -0.12 0.99 16 8 H 0.05 1.02 7.93 -51.93 -0.41 0.61 16 9 C -0.12 -1.79 4.86 -25.35 -0.12 -1.92 16 10 C -0.13 -1.89 7.00 -25.35 -0.18 -2.07 16 11 C 0.05 0.88 6.27 -2.17 -0.01 0.86 16 12 N -0.50 -10.84 4.97 -223.56 -1.11 -11.95 16 13 C 0.18 4.79 4.55 -4.97 -0.02 4.76 16 14 C -0.50 -14.26 9.14 -34.44 -0.31 -14.57 16 15 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 16 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 17 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 18 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 C 0.03 0.34 4.94 -3.71 -0.02 0.32 16 23 C 0.09 1.10 3.42 -26.68 -0.09 1.00 16 24 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 25 C -0.14 -1.37 9.57 37.16 0.36 -1.01 16 26 O -0.38 -5.05 10.11 -35.23 -0.36 -5.41 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.10 1.27 4.37 -51.93 -0.23 1.04 16 31 H 0.04 0.53 7.99 -51.93 -0.41 0.11 16 32 H 0.04 0.60 7.65 -51.93 -0.40 0.21 16 33 H 0.09 1.71 7.11 -51.93 -0.37 1.34 16 34 H 0.06 0.90 7.42 -51.93 -0.39 0.52 16 35 H 0.06 0.81 6.10 -51.93 -0.32 0.49 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.04 0.71 7.68 -51.93 -0.40 0.31 16 39 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 40 H 0.03 0.86 7.02 -51.93 -0.36 0.49 16 41 H -0.01 -0.15 7.65 -51.93 -0.40 -0.55 16 42 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 43 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 355.59 15.07 5.36 5.36 Total: -1.00 -30.38 355.59 -10.64 -41.02 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -8.72 Total: -1.61 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -0.39 Total: -8.78 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: -1.51 Total: -47.35 kcal Atomic # 8 Polarization: -5.05 SS G_CDS: -0.36 Total: -5.41 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.38 -10.64 -41.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066961026.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.431 kcal (2) G-P(sol) polarization free energy of solvation -30.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds