Wall clock time and date at job start Tue Mar 31 2020 06:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.50422 * 2 1 4 4 C 1.53093 * 109.50658 * 239.86874 * 2 1 3 5 5 N 1.47014 * 109.25783 * 183.21490 * 4 2 1 6 6 C 1.46907 * 110.99857 * 182.39348 * 5 4 2 7 7 C 1.53000 * 109.47140 * 52.19948 * 6 5 4 8 8 H 1.08996 * 110.36468 * 40.90356 * 7 6 5 9 9 C 1.54374 * 110.51434 * 278.48899 * 7 6 5 10 10 C 1.54262 * 105.06153 * 217.32007 * 9 7 6 11 11 C 1.54376 * 105.06053 * 359.97438 * 10 9 7 12 12 N 1.48555 * 110.41343 * 163.25391 * 7 6 5 13 13 C 1.46901 * 111.00063 * 277.93959 * 12 7 6 14 14 C 1.50703 * 109.46787 * 164.59035 * 13 12 7 15 15 H 1.07992 * 120.00562 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99792 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99920 * 359.73222 * 16 14 13 18 18 Si 1.86794 * 120.00269 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46986 * 0.02562 * 18 16 14 20 20 H 1.48492 * 109.47390 * 120.00008 * 18 16 14 21 21 H 1.48501 * 109.47105 * 240.00455 * 18 16 14 22 22 C 1.47013 * 110.75326 * 58.61967 * 5 4 2 23 23 C 1.53094 * 109.25825 * 301.38322 * 22 5 4 24 24 H 1.08995 * 109.50833 * 296.91533 * 23 22 5 25 25 C 1.52999 * 109.51268 * 176.82443 * 23 22 5 26 26 O 1.43016 * 109.50611 * 120.08738 * 2 1 3 27 27 H 1.08998 * 109.46931 * 299.91052 * 1 2 3 28 28 H 1.08996 * 109.46966 * 59.91039 * 1 2 3 29 29 H 1.09005 * 109.46950 * 179.91633 * 1 2 3 30 30 H 1.09006 * 109.50739 * 63.28089 * 4 2 1 31 31 H 1.08998 * 109.51207 * 303.15483 * 4 2 1 32 32 H 1.08997 * 109.47249 * 292.19788 * 6 5 4 33 33 H 1.09002 * 109.46777 * 172.19667 * 6 5 4 34 34 H 1.09007 * 110.32349 * 336.21496 * 9 7 6 35 35 H 1.08997 * 110.32710 * 98.41695 * 9 7 6 36 36 H 1.08999 * 110.32482 * 118.89414 * 10 9 7 37 37 H 1.09002 * 110.31949 * 240.99692 * 10 9 7 38 38 H 1.09001 * 110.41356 * 265.07789 * 11 10 9 39 39 H 1.08994 * 110.41189 * 142.63365 * 11 10 9 40 40 H 1.08999 * 109.47262 * 44.59354 * 13 12 7 41 41 H 1.08996 * 109.47196 * 284.59253 * 13 12 7 42 42 H 0.96999 * 120.00332 * 180.02562 * 17 16 14 43 43 H 1.09002 * 109.50789 * 61.31812 * 22 5 4 44 44 H 1.08993 * 109.50696 * 181.44646 * 22 5 4 45 45 H 1.09003 * 109.46850 * 59.99780 * 25 23 22 46 46 H 1.08994 * 109.47549 * 179.97438 * 25 23 22 47 47 H 1.09004 * 109.46947 * 300.00364 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0412 -0.7244 -1.2481 5 7 3.5093 -0.7889 -1.2041 6 6 4.0446 -1.4278 -2.4138 7 6 3.4684 -0.7384 -3.6522 8 1 3.4374 0.3411 -3.5055 9 6 2.0571 -1.2800 -3.9654 10 6 1.9815 -1.3351 -5.5052 11 6 3.3532 -0.8216 -5.9928 12 7 4.2738 -1.0749 -4.8544 13 6 5.4676 -0.2236 -4.9435 14 6 6.4391 -0.8222 -5.9278 15 1 6.1940 -1.7427 -6.4367 16 6 7.6404 -0.1941 -6.1796 17 7 7.9362 0.9302 -5.5647 18 14 8.8443 -0.9356 -7.4003 19 1 8.2755 -2.1892 -7.9572 20 1 9.0889 0.0288 -8.5025 21 1 10.1254 -1.2359 -6.7118 22 6 3.9640 -1.4884 0.0063 23 6 3.4335 -0.7564 1.2419 24 1 3.8534 0.2488 1.2777 25 6 3.8367 -1.5236 2.5027 26 8 2.0076 -0.6758 1.1664 27 1 -0.3633 0.5124 0.8908 28 1 -0.3633 0.5152 -0.8892 29 1 -0.3633 -1.0277 -0.0015 30 1 1.7273 -0.1803 -2.1389 31 1 1.6332 -1.7347 -1.2754 32 1 3.7660 -2.4815 -2.4218 33 1 5.1310 -1.3391 -2.4210 34 1 1.9324 -2.2777 -3.5443 35 1 1.2968 -0.6048 -3.5729 36 1 1.8196 -2.3598 -5.8398 37 1 1.1828 -0.6883 -5.8683 38 1 3.3038 0.2449 -6.2123 39 1 3.6761 -1.3773 -6.8732 40 1 5.9393 -0.1555 -3.9632 41 1 5.1791 0.7729 -5.2779 42 1 8.7812 1.3723 -5.7420 43 1 3.5867 -2.5110 -0.0008 44 1 5.0536 -1.5020 0.0312 45 1 4.9235 -1.5874 2.5573 46 1 3.4591 -1.0018 3.3820 47 1 3.4152 -2.5282 2.4671 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066961026.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:48 Heat of formation + Delta-G solvation = -57.855560 kcal Electronic energy + Delta-G solvation = -23650.184382 eV Core-core repulsion = 20445.841461 eV Total energy + Delta-G solvation = -3204.342920 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.15325 -39.75993 -36.74769 -35.17131 -34.68913 -32.71262 -31.75772 -30.45273 -28.48675 -27.72467 -26.80821 -24.47415 -23.44072 -22.93820 -21.82594 -21.20687 -20.88904 -18.50070 -17.65077 -17.58865 -16.78856 -16.63790 -16.16326 -16.04150 -15.82591 -15.33791 -15.07770 -14.60334 -14.54040 -14.00851 -13.91133 -13.80110 -13.48342 -13.41616 -13.05634 -12.96537 -12.89568 -12.81344 -12.69814 -12.54470 -12.34312 -12.24150 -11.98363 -11.85162 -11.82969 -11.61215 -11.42491 -11.27148 -11.23492 -10.62198 -10.50772 -9.40067 -9.21485 -8.21615 -6.32300 1.39149 1.39547 1.53633 2.38483 2.61164 2.74176 3.10256 3.43184 3.68268 3.75115 3.81591 3.90562 4.04306 4.10844 4.12456 4.16805 4.30348 4.40376 4.42479 4.47200 4.52354 4.59128 4.64466 4.68077 4.72416 4.75563 4.85944 4.95588 4.98174 4.99020 5.03519 5.04333 5.07526 5.13945 5.19288 5.22510 5.26825 5.30946 5.37908 5.63570 5.91096 5.97440 6.05402 6.25226 6.26614 6.51798 6.83697 7.37688 8.89561 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019730 B = 0.004266 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.835273 B = 6561.397267 C = 7563.156399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.085 3.915 3 H 0.056 0.944 4 C 0.016 3.984 5 N -0.551 5.551 6 C 0.087 3.913 7 C 0.061 3.939 8 H 0.033 0.967 9 C -0.112 4.112 10 C -0.114 4.114 11 C 0.039 3.961 12 N -0.513 5.513 13 C 0.203 3.797 14 C -0.521 4.521 15 H 0.060 0.940 16 C 0.001 3.999 17 N -0.935 5.935 18 Si 0.970 3.030 19 H -0.264 1.264 20 H -0.277 1.277 21 H -0.277 1.277 22 C 0.026 3.974 23 C 0.090 3.910 24 H 0.058 0.942 25 C -0.137 4.137 26 O -0.392 6.392 27 H 0.069 0.931 28 H 0.089 0.911 29 H 0.064 0.936 30 H 0.101 0.899 31 H 0.044 0.956 32 H 0.041 0.959 33 H 0.049 0.951 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.021 0.979 39 H 0.066 0.934 40 H 0.000 1.000 41 H -0.038 1.038 42 H 0.264 0.736 43 H 0.042 0.958 44 H 0.081 0.919 45 H 0.085 0.915 46 H 0.072 0.928 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.329 -4.189 11.659 19.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.027 3.973 3 H 0.074 0.926 4 C -0.112 4.112 5 N -0.276 5.276 6 C -0.041 4.041 7 C -0.048 4.048 8 H 0.051 0.949 9 C -0.149 4.149 10 C -0.152 4.152 11 C -0.089 4.089 12 N -0.238 5.238 13 C 0.076 3.924 14 C -0.560 4.560 15 H 0.078 0.922 16 C -0.196 4.196 17 N -0.576 5.576 18 Si 0.794 3.206 19 H -0.188 1.188 20 H -0.203 1.203 21 H -0.203 1.203 22 C -0.103 4.103 23 C 0.033 3.967 24 H 0.076 0.924 25 C -0.195 4.195 26 O -0.312 6.312 27 H 0.088 0.912 28 H 0.107 0.893 29 H 0.083 0.917 30 H 0.119 0.881 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.110 0.890 36 H 0.097 0.903 37 H 0.106 0.894 38 H 0.040 0.960 39 H 0.085 0.915 40 H 0.018 0.982 41 H -0.020 1.020 42 H 0.073 0.927 43 H 0.060 0.940 44 H 0.100 0.900 45 H 0.103 0.897 46 H 0.091 0.909 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.937 -4.216 11.831 19.515 hybrid contribution 1.020 0.267 -0.947 1.418 sum -13.916 -3.949 10.883 18.103 Atomic orbital electron populations 1.21735 0.90734 1.03324 1.03657 1.22311 0.96293 0.94976 0.83730 0.92556 1.23263 0.87066 1.00533 1.00331 1.62199 1.10078 1.53262 1.02026 1.21790 0.98699 0.95491 0.88098 1.22594 0.94145 0.96972 0.91097 0.94932 1.22644 0.94379 1.01667 0.96252 1.22321 0.95285 1.02345 0.95269 1.22991 0.93022 0.97949 0.94944 1.65268 1.05035 1.51773 1.01702 1.19479 0.88278 0.89226 0.95392 1.21464 1.01998 1.08672 1.23826 0.92213 1.25929 1.00082 0.95273 0.98361 1.70104 1.24440 1.18607 1.44425 0.85325 0.78274 0.78581 0.78383 1.18769 1.20290 1.20306 1.22828 1.01172 0.96102 0.90152 1.22193 0.80886 0.98943 0.94722 0.92392 1.21728 1.02315 1.00300 0.95125 1.87936 1.21321 1.78613 1.43352 0.91169 0.89268 0.91700 0.88091 0.93774 0.94125 0.93208 0.90676 0.88961 0.90267 0.89435 0.96014 0.91512 0.98160 1.02029 0.92693 0.93992 0.90045 0.89661 0.90909 0.91791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.57 71.98 0.69 -1.55 16 2 C 0.08 1.91 3.43 30.63 0.10 2.02 16 3 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 4 C 0.02 0.38 3.65 86.31 0.32 0.70 16 5 N -0.55 -16.72 4.84 -895.22 -4.33 -21.05 16 6 C 0.09 3.07 5.05 86.30 0.44 3.51 16 7 C 0.06 2.22 1.74 45.06 0.08 2.30 16 8 H 0.03 1.32 7.93 -2.39 -0.02 1.30 16 9 C -0.11 -2.99 4.86 31.49 0.15 -2.84 16 10 C -0.11 -3.11 7.00 31.49 0.22 -2.89 16 11 C 0.04 1.51 6.27 86.44 0.54 2.05 16 12 N -0.51 -22.83 4.97 -861.22 -4.28 -27.12 16 13 C 0.20 11.25 4.55 85.56 0.39 11.64 16 14 C -0.52 -30.54 9.14 25.60 0.23 -30.31 16 15 H 0.06 3.46 7.81 -2.91 -0.02 3.44 16 16 C 0.00 0.08 5.46 84.66 0.46 0.54 16 17 N -0.94 -57.62 13.29 21.45 0.28 -57.34 16 18 Si 0.97 45.18 29.54 68.60 2.03 47.21 16 19 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 20 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 22 C 0.03 0.68 4.94 86.31 0.43 1.11 16 23 C 0.09 2.13 3.42 30.63 0.10 2.24 16 24 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 25 C -0.14 -2.43 9.57 71.98 0.69 -1.75 16 26 O -0.39 -9.78 10.11 -148.98 -1.51 -11.29 16 27 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 30 H 0.10 2.41 4.37 -2.38 -0.01 2.40 16 31 H 0.04 1.07 7.99 -2.39 -0.02 1.05 16 32 H 0.04 1.37 7.65 -2.39 -0.02 1.35 16 33 H 0.05 2.10 7.11 -2.39 -0.02 2.08 16 34 H 0.07 1.89 7.42 -2.38 -0.02 1.87 16 35 H 0.09 2.00 6.10 -2.39 -0.01 1.99 16 36 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.02 0.88 7.68 -2.39 -0.02 0.86 16 39 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 40 H 0.00 0.02 7.02 -2.39 -0.02 0.00 16 41 H -0.04 -2.30 7.65 -2.39 -0.02 -2.31 16 42 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 43 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.08 2.19 8.14 -2.39 -0.02 2.18 16 45 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 Total: -1.00 -67.82 355.59 -2.06 -69.88 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: 0.91 Total: 12.94 kcal Atomic # 6 Polarization: -18.07 SS G_CDS: 4.84 Total: -13.23 kcal Atomic # 7 Polarization: -97.18 SS G_CDS: -8.33 Total: -105.51 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: -1.51 Total: -11.29 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -67.82 -2.06 -69.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066961026.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.020 kcal (2) G-P(sol) polarization free energy of solvation -67.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds