Wall clock time and date at job start Tue Mar 31 2020 06:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08991 * 109.50750 * 2 1 4 4 C 1.53096 * 109.50807 * 239.91227 * 2 1 3 5 5 N 1.47013 * 109.25924 * 183.17365 * 4 2 1 6 6 C 1.46899 * 111.00268 * 182.38875 * 5 4 2 7 7 C 1.52996 * 109.47134 * 164.33072 * 6 5 4 8 8 H 1.09001 * 110.45809 * 52.38679 * 7 6 5 9 9 C 1.54371 * 110.41612 * 289.96716 * 7 6 5 10 10 C 1.54265 * 105.06425 * 217.36610 * 9 7 6 11 11 C 1.54383 * 105.05591 * 359.97438 * 10 9 7 12 12 N 1.48558 * 104.59651 * 23.85326 * 11 10 9 13 13 C 1.46893 * 111.00143 * 200.95635 * 12 11 10 14 14 C 1.50699 * 109.47692 * 282.45782 * 13 12 11 15 15 H 1.08007 * 119.99181 * 355.62405 * 14 13 12 16 16 C 1.37873 * 120.00568 * 175.63355 * 14 13 12 17 17 N 1.31509 * 119.99832 * 185.49833 * 16 14 13 18 18 Si 1.86802 * 119.99911 * 5.49246 * 16 14 13 19 19 H 1.48504 * 109.46957 * 84.46323 * 18 16 14 20 20 H 1.48498 * 109.46944 * 204.46459 * 18 16 14 21 21 H 1.48501 * 109.47264 * 324.46452 * 18 16 14 22 22 C 1.47015 * 110.75335 * 58.61694 * 5 4 2 23 23 C 1.53102 * 109.25615 * 301.38536 * 22 5 4 24 24 H 1.09003 * 109.50844 * 176.78186 * 23 22 5 25 25 C 1.52990 * 109.50789 * 296.91311 * 23 22 5 26 26 O 1.43014 * 109.25878 * 56.84752 * 23 22 5 27 27 H 1.09005 * 109.47164 * 180.08646 * 1 2 3 28 28 H 1.08990 * 109.47596 * 300.08509 * 1 2 3 29 29 H 1.09001 * 109.46968 * 60.09178 * 1 2 3 30 30 H 1.08999 * 109.50670 * 63.23912 * 4 2 1 31 31 H 1.09003 * 109.50777 * 303.11082 * 4 2 1 32 32 H 1.09004 * 109.46415 * 44.33879 * 6 5 4 33 33 H 1.08995 * 109.47392 * 284.34077 * 6 5 4 34 34 H 1.08998 * 110.32705 * 336.26386 * 9 7 6 35 35 H 1.09010 * 110.32588 * 98.47058 * 9 7 6 36 36 H 1.08996 * 110.32389 * 118.89209 * 10 9 7 37 37 H 1.08998 * 110.32475 * 241.00550 * 10 9 7 38 38 H 1.08995 * 110.41420 * 265.07212 * 11 10 9 39 39 H 1.08995 * 110.40850 * 142.62946 * 11 10 9 40 40 H 1.08995 * 109.47423 * 162.45016 * 13 12 11 41 41 H 1.09007 * 109.47128 * 42.45663 * 13 12 11 42 42 H 0.97006 * 119.99680 * 179.97438 * 17 16 14 43 43 H 1.09004 * 109.50416 * 61.31628 * 22 5 4 44 44 H 1.08993 * 109.51195 * 181.45184 * 22 5 4 45 45 H 1.08999 * 109.47530 * 177.50207 * 25 23 22 46 46 H 1.09002 * 109.46971 * 297.50415 * 25 23 22 47 47 H 1.09002 * 109.47499 * 57.49851 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0273 0.0000 4 6 2.0413 -0.7234 -1.2486 5 7 3.5094 -0.7871 -1.2052 6 6 4.0447 -1.4251 -2.4153 7 6 5.5422 -1.1317 -2.5266 8 1 6.0525 -1.3982 -1.6011 9 6 5.7757 0.3572 -2.8608 10 6 6.9785 0.3675 -3.8267 11 6 7.3708 -1.1162 -3.9944 12 7 6.1315 -1.8698 -3.6730 13 6 6.4402 -3.2575 -3.3033 14 6 6.7303 -4.0564 -4.5477 15 1 6.6208 -3.5997 -5.5203 16 6 7.1354 -5.3703 -4.4448 17 7 7.4924 -6.0346 -5.5221 18 14 7.1772 -6.2067 -2.7750 19 1 5.8273 -6.7345 -2.4518 20 1 8.1521 -7.3264 -2.8065 21 1 7.5855 -5.2240 -1.7392 22 6 3.9649 -1.4869 0.0048 23 6 3.4343 -0.7558 1.2409 24 1 3.7216 -1.3031 2.1387 25 6 4.0229 0.6555 1.2916 26 8 2.0084 -0.6761 1.1659 27 1 -0.3634 -1.0277 0.0016 28 1 -0.3634 0.5151 0.8891 29 1 -0.3633 0.5124 -0.8908 30 1 1.7268 -0.1791 -2.1391 31 1 1.6338 -1.7341 -1.2762 32 1 3.5310 -1.0302 -3.2918 33 1 3.8888 -2.5023 -2.3574 34 1 4.8960 0.7787 -3.3471 35 1 6.0127 0.9159 -1.9552 36 1 6.6890 0.7937 -4.7872 37 1 7.8051 0.9325 -3.3961 38 1 8.1672 -1.3799 -3.2985 39 1 7.6805 -1.3139 -5.0206 40 1 5.5875 -3.6931 -2.7825 41 1 7.3122 -3.2740 -2.6494 42 1 7.7778 -6.9589 -5.4496 43 1 3.5881 -2.5098 -0.0028 44 1 5.0545 -1.4999 0.0294 45 1 3.6107 1.1906 2.1470 46 1 5.1067 0.5938 1.3894 47 1 3.7707 1.1875 0.3743 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066961029.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:51 Heat of formation + Delta-G solvation = -37.575527 kcal Electronic energy + Delta-G solvation = -23842.571076 eV Core-core repulsion = 20639.107564 eV Total energy + Delta-G solvation = -3203.463512 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.12805 -38.44884 -35.59912 -33.49860 -33.04740 -31.17323 -30.78192 -29.26290 -26.97086 -26.84490 -25.52497 -23.07525 -22.57574 -21.85594 -20.07670 -19.59962 -19.31087 -16.74069 -16.52926 -16.45628 -15.56785 -15.33984 -15.11063 -14.63578 -14.43270 -14.09485 -13.95310 -13.27346 -13.03136 -12.90594 -12.59321 -12.56295 -12.48200 -12.37988 -12.01536 -11.80795 -11.77097 -11.74776 -11.25339 -11.11751 -10.89829 -10.71747 -10.53166 -10.43344 -10.34279 -10.32444 -10.05458 -9.83533 -9.58328 -9.33809 -8.55346 -8.29248 -7.53309 -6.06673 -4.03056 3.25795 3.33095 3.33887 3.59015 3.77713 4.39945 4.67367 4.75227 4.84392 4.93159 4.98974 5.07064 5.12197 5.20964 5.24657 5.27258 5.31085 5.40408 5.43573 5.52142 5.55430 5.65092 5.71181 5.77222 5.80027 5.85898 5.88892 5.95488 6.01502 6.06189 6.14899 6.21228 6.29564 6.31799 6.46745 6.55685 6.64935 6.79139 6.89896 7.02118 7.05618 7.14769 7.55145 7.88493 7.89219 8.64970 9.04643 9.55845 11.06698 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017764 B = 0.004791 C = 0.004277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.812279 B = 5843.258381 C = 6544.652160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.087 3.913 3 H 0.068 0.932 4 C 0.025 3.975 5 N -0.531 5.531 6 C 0.072 3.928 7 C 0.064 3.936 8 H 0.040 0.960 9 C -0.101 4.101 10 C -0.129 4.129 11 C 0.048 3.952 12 N -0.494 5.494 13 C 0.153 3.847 14 C -0.506 4.506 15 H 0.081 0.919 16 C 0.069 3.931 17 N -0.899 5.899 18 Si 0.872 3.128 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.270 1.270 22 C 0.020 3.980 23 C 0.092 3.908 24 H 0.101 0.899 25 C -0.174 4.174 26 O -0.380 6.380 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.041 0.959 32 H 0.081 0.919 33 H 0.041 0.959 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.034 0.966 39 H 0.081 0.919 40 H 0.019 0.981 41 H -0.009 1.009 42 H 0.263 0.737 43 H 0.042 0.958 44 H 0.086 0.914 45 H 0.054 0.946 46 H 0.063 0.937 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.299 14.757 12.403 21.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.029 3.971 3 H 0.086 0.914 4 C -0.104 4.104 5 N -0.256 5.256 6 C -0.056 4.056 7 C -0.045 4.045 8 H 0.058 0.942 9 C -0.139 4.139 10 C -0.167 4.167 11 C -0.080 4.080 12 N -0.219 5.219 13 C 0.026 3.974 14 C -0.544 4.544 15 H 0.099 0.901 16 C -0.132 4.132 17 N -0.538 5.538 18 Si 0.699 3.301 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.195 1.195 22 C -0.109 4.109 23 C 0.034 3.966 24 H 0.119 0.881 25 C -0.231 4.231 26 O -0.299 6.299 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.059 0.941 32 H 0.100 0.900 33 H 0.059 0.941 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.052 0.948 39 H 0.100 0.900 40 H 0.037 0.963 41 H 0.009 0.991 42 H 0.073 0.927 43 H 0.060 0.940 44 H 0.105 0.895 45 H 0.073 0.927 46 H 0.082 0.918 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.535 14.928 12.028 21.411 hybrid contribution 0.608 -1.546 1.283 2.099 sum -8.927 13.382 13.310 20.879 Atomic orbital electron populations 1.21747 0.93110 1.02898 1.02438 1.22137 0.94427 0.95964 0.84535 0.91382 1.22797 0.88291 1.00197 0.99077 1.62137 1.08097 1.53003 1.02359 1.22017 0.95128 0.97179 0.91237 1.22511 0.94085 0.94097 0.93836 0.94184 1.22139 0.98003 0.95420 0.98355 1.22382 0.97640 0.97067 0.99647 1.22911 0.91884 0.91437 1.01798 1.65172 1.22398 1.02739 1.31559 1.20323 0.94299 0.85764 0.97024 1.20993 1.44463 0.95685 0.93262 0.90126 1.24891 0.94866 0.97325 0.96158 1.69897 1.45049 1.10712 1.28188 0.86947 0.78229 0.79565 0.85323 1.20140 1.21159 1.19504 1.22833 1.01448 0.95982 0.90591 1.22234 0.80615 0.96416 0.97355 0.88091 1.22270 1.01194 0.96995 1.02679 1.88013 1.20885 1.78224 1.42815 0.91943 0.91781 0.90976 0.89727 0.94061 0.90039 0.94103 0.91522 0.92231 0.91619 0.92351 0.94762 0.90030 0.96340 0.99082 0.92668 0.94022 0.89544 0.92653 0.91802 0.90794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.57 37.16 0.36 -0.88 16 2 C 0.09 0.93 3.03 -26.68 -0.08 0.85 16 3 H 0.07 0.71 6.54 -51.93 -0.34 0.37 16 4 C 0.02 0.29 4.90 -3.71 -0.02 0.27 16 5 N -0.53 -6.98 3.89 -234.31 -0.91 -7.89 16 6 C 0.07 1.13 4.56 -3.83 -0.02 1.11 16 7 C 0.06 1.08 2.30 -66.09 -0.15 0.93 16 8 H 0.04 0.71 6.40 -51.93 -0.33 0.37 16 9 C -0.10 -1.45 6.44 -25.35 -0.16 -1.62 16 10 C -0.13 -1.92 7.00 -25.34 -0.18 -2.09 16 11 C 0.05 0.91 6.20 -2.18 -0.01 0.89 16 12 N -0.49 -10.32 4.99 -223.60 -1.12 -11.43 16 13 C 0.15 3.73 3.64 -4.98 -0.02 3.71 16 14 C -0.51 -14.50 9.61 -34.44 -0.33 -14.83 16 15 H 0.08 2.53 8.06 -52.48 -0.42 2.11 16 16 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 17 N -0.90 -27.69 13.96 55.43 0.77 -26.92 16 18 Si 0.87 21.68 27.46 -169.99 -4.67 17.02 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.27 -6.49 6.61 56.52 0.37 -6.12 16 22 C 0.02 0.26 4.89 -3.71 -0.02 0.24 16 23 C 0.09 1.04 3.92 -26.68 -0.10 0.93 16 24 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 25 C -0.17 -1.74 8.85 37.15 0.33 -1.42 16 26 O -0.38 -4.71 10.29 -35.23 -0.36 -5.08 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.90 8.04 -51.93 -0.42 0.48 16 31 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 1.27 7.75 -51.93 -0.40 0.87 16 33 H 0.04 0.73 7.09 -51.93 -0.37 0.37 16 34 H 0.07 0.93 7.74 -51.93 -0.40 0.53 16 35 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.03 0.66 7.71 -51.93 -0.40 0.26 16 39 H 0.08 1.65 8.14 -51.93 -0.42 1.22 16 40 H 0.02 0.46 6.56 -51.93 -0.34 0.12 16 41 H -0.01 -0.21 6.74 -51.92 -0.35 -0.56 16 42 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 43 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.09 1.15 6.53 -51.93 -0.34 0.81 16 45 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.07 0.80 6.18 -51.93 -0.32 0.48 16 LS Contribution 353.14 15.07 5.32 5.32 Total: -1.00 -30.57 353.14 -10.14 -40.71 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -8.67 Total: -1.75 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: -0.51 Total: -9.98 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: -1.25 Total: -46.24 kcal Atomic # 8 Polarization: -4.71 SS G_CDS: -0.36 Total: -5.08 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.02 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.57 -10.14 -40.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066961029.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.131 kcal (2) G-P(sol) polarization free energy of solvation -30.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds