Wall clock time and date at job start Tue Mar 31 2020 06:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08991 * 109.50750 * 2 1 4 4 C 1.53096 * 109.50807 * 239.91227 * 2 1 3 5 5 N 1.47013 * 109.25924 * 183.17365 * 4 2 1 6 6 C 1.46899 * 111.00268 * 182.38875 * 5 4 2 7 7 C 1.52996 * 109.47134 * 164.33072 * 6 5 4 8 8 H 1.09001 * 110.45809 * 52.38679 * 7 6 5 9 9 C 1.54371 * 110.41612 * 289.96716 * 7 6 5 10 10 C 1.54265 * 105.06425 * 217.36610 * 9 7 6 11 11 C 1.54383 * 105.05591 * 359.97438 * 10 9 7 12 12 N 1.48558 * 104.59651 * 23.85326 * 11 10 9 13 13 C 1.46893 * 111.00143 * 200.95635 * 12 11 10 14 14 C 1.50699 * 109.47692 * 282.45782 * 13 12 11 15 15 H 1.08007 * 119.99181 * 355.62405 * 14 13 12 16 16 C 1.37873 * 120.00568 * 175.63355 * 14 13 12 17 17 N 1.31509 * 119.99832 * 185.49833 * 16 14 13 18 18 Si 1.86802 * 119.99911 * 5.49246 * 16 14 13 19 19 H 1.48504 * 109.46957 * 84.46323 * 18 16 14 20 20 H 1.48498 * 109.46944 * 204.46459 * 18 16 14 21 21 H 1.48501 * 109.47264 * 324.46452 * 18 16 14 22 22 C 1.47015 * 110.75335 * 58.61694 * 5 4 2 23 23 C 1.53102 * 109.25615 * 301.38536 * 22 5 4 24 24 H 1.09003 * 109.50844 * 176.78186 * 23 22 5 25 25 C 1.52990 * 109.50789 * 296.91311 * 23 22 5 26 26 O 1.43014 * 109.25878 * 56.84752 * 23 22 5 27 27 H 1.09005 * 109.47164 * 180.08646 * 1 2 3 28 28 H 1.08990 * 109.47596 * 300.08509 * 1 2 3 29 29 H 1.09001 * 109.46968 * 60.09178 * 1 2 3 30 30 H 1.08999 * 109.50670 * 63.23912 * 4 2 1 31 31 H 1.09003 * 109.50777 * 303.11082 * 4 2 1 32 32 H 1.09004 * 109.46415 * 44.33879 * 6 5 4 33 33 H 1.08995 * 109.47392 * 284.34077 * 6 5 4 34 34 H 1.08998 * 110.32705 * 336.26386 * 9 7 6 35 35 H 1.09010 * 110.32588 * 98.47058 * 9 7 6 36 36 H 1.08996 * 110.32389 * 118.89209 * 10 9 7 37 37 H 1.08998 * 110.32475 * 241.00550 * 10 9 7 38 38 H 1.08995 * 110.41420 * 265.07212 * 11 10 9 39 39 H 1.08995 * 110.40850 * 142.62946 * 11 10 9 40 40 H 1.08995 * 109.47423 * 162.45016 * 13 12 11 41 41 H 1.09007 * 109.47128 * 42.45663 * 13 12 11 42 42 H 0.97006 * 119.99680 * 179.97438 * 17 16 14 43 43 H 1.09004 * 109.50416 * 61.31628 * 22 5 4 44 44 H 1.08993 * 109.51195 * 181.45184 * 22 5 4 45 45 H 1.08999 * 109.47530 * 177.50207 * 25 23 22 46 46 H 1.09002 * 109.46971 * 297.50415 * 25 23 22 47 47 H 1.09002 * 109.47499 * 57.49851 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0273 0.0000 4 6 2.0413 -0.7234 -1.2486 5 7 3.5094 -0.7871 -1.2052 6 6 4.0447 -1.4251 -2.4153 7 6 5.5422 -1.1317 -2.5266 8 1 6.0525 -1.3982 -1.6011 9 6 5.7757 0.3572 -2.8608 10 6 6.9785 0.3675 -3.8267 11 6 7.3708 -1.1162 -3.9944 12 7 6.1315 -1.8698 -3.6730 13 6 6.4402 -3.2575 -3.3033 14 6 6.7303 -4.0564 -4.5477 15 1 6.6208 -3.5997 -5.5203 16 6 7.1354 -5.3703 -4.4448 17 7 7.4924 -6.0346 -5.5221 18 14 7.1772 -6.2067 -2.7750 19 1 5.8273 -6.7345 -2.4518 20 1 8.1521 -7.3264 -2.8065 21 1 7.5855 -5.2240 -1.7392 22 6 3.9649 -1.4869 0.0048 23 6 3.4343 -0.7558 1.2409 24 1 3.7216 -1.3031 2.1387 25 6 4.0229 0.6555 1.2916 26 8 2.0084 -0.6761 1.1659 27 1 -0.3634 -1.0277 0.0016 28 1 -0.3634 0.5151 0.8891 29 1 -0.3633 0.5124 -0.8908 30 1 1.7268 -0.1791 -2.1391 31 1 1.6338 -1.7341 -1.2762 32 1 3.5310 -1.0302 -3.2918 33 1 3.8888 -2.5023 -2.3574 34 1 4.8960 0.7787 -3.3471 35 1 6.0127 0.9159 -1.9552 36 1 6.6890 0.7937 -4.7872 37 1 7.8051 0.9325 -3.3961 38 1 8.1672 -1.3799 -3.2985 39 1 7.6805 -1.3139 -5.0206 40 1 5.5875 -3.6931 -2.7825 41 1 7.3122 -3.2740 -2.6494 42 1 7.7778 -6.9589 -5.4496 43 1 3.5881 -2.5098 -0.0028 44 1 5.0545 -1.4999 0.0294 45 1 3.6107 1.1906 2.1470 46 1 5.1067 0.5938 1.3894 47 1 3.7707 1.1875 0.3743 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066961029.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:50 Heat of formation + Delta-G solvation = -58.852274 kcal Electronic energy + Delta-G solvation = -23843.493705 eV Core-core repulsion = 20639.107564 eV Total energy + Delta-G solvation = -3204.386141 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.13041 -39.83320 -36.71574 -35.11281 -34.32626 -32.95746 -31.83136 -30.33998 -28.77538 -27.86053 -26.67669 -24.22044 -23.87663 -23.29170 -21.58013 -20.84513 -20.37204 -18.89742 -17.52011 -17.45240 -16.93960 -16.57224 -16.34301 -15.96476 -15.62883 -15.55517 -15.23353 -14.64462 -14.55363 -14.44483 -13.97933 -13.86957 -13.44636 -13.28263 -13.18304 -13.00962 -12.84242 -12.78908 -12.64162 -12.25888 -12.19253 -12.12337 -12.05184 -11.93778 -11.86660 -11.70580 -11.48700 -11.29149 -11.19310 -10.80192 -10.51251 -9.43856 -9.18284 -8.33602 -6.36074 1.27854 1.28775 1.38663 2.28009 2.58512 2.81975 2.98916 3.41949 3.73854 3.79532 3.88257 3.90228 4.00445 4.09482 4.19476 4.23041 4.30380 4.39740 4.45143 4.47495 4.50125 4.63308 4.70965 4.72544 4.73634 4.77497 4.80665 4.83977 4.89613 5.00938 5.04122 5.06727 5.10312 5.15395 5.17205 5.27761 5.32681 5.40938 5.43246 5.52225 5.84368 5.94108 6.00724 6.21527 6.28244 6.58563 6.69989 7.27449 8.83340 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017764 B = 0.004791 C = 0.004277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.812279 B = 5843.258381 C = 6544.652160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.088 3.912 3 H 0.077 0.923 4 C 0.023 3.977 5 N -0.520 5.520 6 C 0.081 3.919 7 C 0.065 3.935 8 H 0.037 0.963 9 C -0.090 4.090 10 C -0.117 4.117 11 C 0.042 3.958 12 N -0.514 5.514 13 C 0.168 3.832 14 C -0.515 4.515 15 H 0.036 0.964 16 C 0.012 3.988 17 N -0.945 5.945 18 Si 0.942 3.058 19 H -0.266 1.266 20 H -0.278 1.278 21 H -0.255 1.255 22 C 0.019 3.981 23 C 0.092 3.908 24 H 0.112 0.888 25 C -0.166 4.166 26 O -0.395 6.395 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.026 0.974 32 H 0.082 0.918 33 H 0.010 0.990 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.028 0.972 39 H 0.056 0.944 40 H 0.018 0.982 41 H -0.013 1.013 42 H 0.268 0.732 43 H 0.022 0.978 44 H 0.084 0.916 45 H 0.064 0.936 46 H 0.070 0.930 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.943 16.741 14.775 24.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.030 3.970 3 H 0.095 0.905 4 C -0.105 4.105 5 N -0.244 5.244 6 C -0.047 4.047 7 C -0.044 4.044 8 H 0.055 0.945 9 C -0.128 4.128 10 C -0.155 4.155 11 C -0.086 4.086 12 N -0.239 5.239 13 C 0.040 3.960 14 C -0.553 4.553 15 H 0.054 0.946 16 C -0.186 4.186 17 N -0.585 5.585 18 Si 0.766 3.234 19 H -0.192 1.192 20 H -0.203 1.203 21 H -0.179 1.179 22 C -0.110 4.110 23 C 0.034 3.966 24 H 0.130 0.870 25 C -0.224 4.224 26 O -0.315 6.315 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.109 0.891 30 H 0.117 0.883 31 H 0.044 0.956 32 H 0.100 0.900 33 H 0.029 0.971 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.047 0.953 39 H 0.074 0.926 40 H 0.036 0.964 41 H 0.005 0.995 42 H 0.077 0.923 43 H 0.040 0.960 44 H 0.102 0.898 45 H 0.083 0.917 46 H 0.089 0.911 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.191 16.941 14.406 24.462 hybrid contribution 0.788 -2.140 0.447 2.324 sum -9.403 14.801 14.852 22.980 Atomic orbital electron populations 1.21761 0.91567 1.02780 1.03740 1.22263 0.95623 0.95857 0.83241 0.90497 1.22916 0.87165 0.99824 1.00626 1.62164 1.09034 1.51924 1.01321 1.21856 0.94713 0.95513 0.92634 1.22582 0.94250 0.95408 0.92167 0.94488 1.22105 0.98106 0.93344 0.99253 1.22337 0.98742 0.93878 1.00574 1.22942 0.91175 0.94367 1.00102 1.65054 1.23500 1.01609 1.33724 1.20005 0.93781 0.87644 0.94584 1.21203 1.44451 0.96459 0.93215 0.94560 1.25794 0.94296 0.97989 1.00498 1.70046 1.46280 1.11316 1.30889 0.85818 0.78778 0.78631 0.80198 1.19152 1.20282 1.17930 1.22872 1.01308 0.95346 0.91430 1.22314 0.80300 0.97288 0.96667 0.87009 1.22198 1.01562 0.95810 1.02782 1.88007 1.21398 1.78589 1.43499 0.92768 0.91054 0.89120 0.88342 0.95586 0.89966 0.97125 0.90627 0.89924 0.90818 0.89702 0.95320 0.92575 0.96429 0.99485 0.92342 0.95966 0.89794 0.91680 0.91110 0.91365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.57 71.98 0.69 -1.41 16 2 C 0.09 1.68 3.03 30.63 0.09 1.77 16 3 H 0.08 1.36 6.54 -2.39 -0.02 1.34 16 4 C 0.02 0.50 4.90 86.31 0.42 0.93 16 5 N -0.52 -12.91 3.89 -895.22 -3.48 -16.39 16 6 C 0.08 2.50 4.56 86.30 0.39 2.90 16 7 C 0.06 2.12 2.30 45.06 0.10 2.22 16 8 H 0.04 1.25 6.40 -2.39 -0.02 1.23 16 9 C -0.09 -2.33 6.44 31.49 0.20 -2.12 16 10 C -0.12 -3.20 7.00 31.49 0.22 -2.98 16 11 C 0.04 1.61 6.20 86.45 0.54 2.14 16 12 N -0.51 -21.67 4.99 -861.35 -4.30 -25.96 16 13 C 0.17 8.30 3.64 85.56 0.31 8.62 16 14 C -0.51 -30.67 9.61 25.60 0.25 -30.42 16 15 H 0.04 2.41 8.06 -2.91 -0.02 2.39 16 16 C 0.01 0.71 5.47 84.65 0.46 1.17 16 17 N -0.94 -59.92 13.96 21.44 0.30 -59.62 16 18 Si 0.94 45.09 27.46 68.60 1.88 46.97 16 19 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 20 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 21 H -0.26 -11.52 6.61 99.48 0.66 -10.86 16 22 C 0.02 0.47 4.89 86.32 0.42 0.89 16 23 C 0.09 1.90 3.92 30.62 0.12 2.02 16 24 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 25 C -0.17 -2.85 8.85 71.98 0.64 -2.21 16 26 O -0.40 -9.06 10.29 -148.98 -1.53 -10.59 16 27 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 28 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.10 1.88 8.04 -2.39 -0.02 1.87 16 31 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.08 2.50 7.75 -2.38 -0.02 2.48 16 33 H 0.01 0.39 7.09 -2.39 -0.02 0.37 16 34 H 0.08 1.85 7.74 -2.39 -0.02 1.84 16 35 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 36 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.03 1.10 7.71 -2.39 -0.02 1.08 16 39 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 40 H 0.02 0.88 6.56 -2.39 -0.02 0.86 16 41 H -0.01 -0.62 6.74 -2.38 -0.02 -0.64 16 42 H 0.27 15.78 8.31 -92.70 -0.77 15.01 16 43 H 0.02 0.63 8.14 -2.38 -0.02 0.61 16 44 H 0.08 2.12 6.53 -2.39 -0.02 2.10 16 45 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 47 H 0.07 1.26 6.18 -2.39 -0.01 1.24 16 Total: -1.00 -68.04 353.14 -1.41 -69.44 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: 0.86 Total: 12.65 kcal Atomic # 6 Polarization: -21.36 SS G_CDS: 4.86 Total: -16.50 kcal Atomic # 7 Polarization: -94.50 SS G_CDS: -7.48 Total: -101.98 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: -1.53 Total: -10.59 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.88 Total: 46.97 kcal Total: -68.04 -1.41 -69.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066961029.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.591 kcal (2) G-P(sol) polarization free energy of solvation -68.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds