Wall clock time and date at job start Tue Mar 31 2020 06:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.47273 * 2 1 4 4 N 1.46906 * 109.46921 * 240.00597 * 2 1 3 5 5 C 1.46902 * 110.99720 * 85.00248 * 4 2 1 6 6 H 1.08997 * 109.46984 * 324.99333 * 5 4 2 7 7 C 1.52992 * 109.47711 * 85.00151 * 5 4 2 8 8 C 1.52998 * 109.47700 * 179.97438 * 7 5 4 9 9 C 1.53005 * 109.46987 * 300.00244 * 8 7 5 10 10 C 1.52992 * 109.47100 * 59.99388 * 9 8 7 11 11 C 1.52998 * 109.47700 * 300.00175 * 10 9 8 12 12 H 1.09001 * 109.47827 * 180.02562 * 11 10 9 13 13 C 1.53003 * 109.46852 * 300.00203 * 11 10 9 14 14 C 1.50696 * 109.47460 * 120.00702 * 2 1 3 15 15 O 1.21281 * 120.00253 * 92.68888 * 14 2 1 16 16 N 1.34781 * 119.99995 * 272.69214 * 14 2 1 17 17 C 1.46494 * 120.00216 * 183.65242 * 16 14 2 18 18 C 1.46500 * 119.99851 * 3.65058 * 16 14 2 19 19 C 1.50710 * 109.46998 * 92.16643 * 18 16 14 20 20 H 1.07993 * 119.99372 * 0.02562 * 19 18 16 21 21 C 1.37877 * 119.99869 * 179.97438 * 19 18 16 22 22 N 1.31512 * 119.99696 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 120.00209 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47406 * 270.00172 * 23 21 19 25 25 H 1.48506 * 109.46855 * 29.99687 * 23 21 19 26 26 H 1.48497 * 109.47221 * 149.99725 * 23 21 19 27 27 H 1.09002 * 109.47783 * 57.08554 * 1 2 3 28 28 H 1.09004 * 109.47356 * 177.08755 * 1 2 3 29 29 H 1.09003 * 109.47304 * 297.08715 * 1 2 3 30 30 H 1.00902 * 110.99722 * 208.95183 * 4 2 1 31 31 H 1.09001 * 109.46784 * 299.99908 * 7 5 4 32 32 H 1.09003 * 109.47054 * 59.99050 * 7 5 4 33 33 H 1.09005 * 109.46481 * 59.99597 * 8 7 5 34 34 H 1.08991 * 109.47714 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.47281 * 179.97438 * 9 8 7 36 36 H 1.09003 * 109.46506 * 299.99862 * 9 8 7 37 37 H 1.08997 * 109.47564 * 60.00322 * 10 9 8 38 38 H 1.09005 * 109.47260 * 180.02562 * 10 9 8 39 39 H 1.09007 * 109.47208 * 179.97438 * 13 11 10 40 40 H 1.08997 * 109.47516 * 299.99681 * 13 11 10 41 41 H 1.09003 * 109.47081 * 59.99947 * 13 11 10 42 42 H 1.08995 * 109.47293 * 274.47053 * 17 16 14 43 43 H 1.09008 * 109.47155 * 34.46562 * 17 16 14 44 44 H 1.08995 * 109.47173 * 154.46773 * 17 16 14 45 45 H 1.09003 * 109.47218 * 332.17246 * 18 16 14 46 46 H 1.08994 * 109.47162 * 212.16697 * 18 16 14 47 47 H 0.97002 * 119.99956 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 -1.1996 5 6 2.0824 0.2229 -2.3469 6 1 1.2575 0.9331 -2.2906 7 6 3.4109 0.9811 -2.3224 8 6 3.4766 1.9339 -3.5177 9 6 3.3713 1.1313 -4.8161 10 6 2.0427 0.3731 -4.8405 11 6 1.9770 -0.5797 -3.6453 12 1 1.0307 -1.1203 -3.6629 13 6 3.1349 -1.5769 -3.7237 14 6 2.0323 -0.7105 1.2303 15 8 2.2810 -1.8968 1.1865 16 7 2.2053 -0.0277 2.3794 17 6 2.7690 -0.6995 3.5529 18 6 1.8296 1.3863 2.4549 19 6 0.4104 1.5033 2.9482 20 1 -0.1549 0.6134 3.1824 21 6 -0.1659 2.7465 3.1014 22 7 -1.4042 2.8486 3.5323 23 14 0.8122 4.2857 2.6970 24 1 1.5351 4.7458 3.9098 25 1 1.7914 3.9818 1.6226 26 1 -0.1121 5.3529 2.2369 27 1 -0.3635 0.5584 -0.8627 28 1 -0.3634 -1.0264 -0.0522 29 1 -0.3634 0.4679 0.9150 30 1 2.9172 -1.1204 -1.0289 31 1 3.4861 1.5526 -1.3973 32 1 4.2358 0.2708 -2.3786 33 1 2.6517 2.6443 -3.4617 34 1 4.4229 2.4744 -3.5000 35 1 3.4176 1.8101 -5.6676 36 1 4.1962 0.4209 -4.8719 37 1 1.2178 1.0833 -4.7846 38 1 1.9679 -0.1991 -5.7653 39 1 3.0884 -2.2555 -2.8719 40 1 3.0599 -2.1487 -4.6487 41 1 4.0814 -1.0366 -3.7062 42 1 1.9722 -1.2007 4.1024 43 1 3.5066 -1.4348 3.2312 44 1 3.2477 0.0370 4.1981 45 1 1.9086 1.8365 1.4654 46 1 2.4975 1.9034 3.1438 47 1 -1.8098 3.7232 3.6398 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078595191.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:51 Heat of formation + Delta-G solvation = -52.751895 kcal Electronic energy + Delta-G solvation = -24024.154668 eV Core-core repulsion = 20820.033059 eV Total energy + Delta-G solvation = -3204.121609 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.88967 -38.89071 -35.20402 -34.93247 -32.54420 -31.97618 -30.85372 -28.50722 -27.82670 -26.43466 -26.20363 -23.15675 -22.54500 -22.07331 -21.11403 -18.86241 -18.07697 -17.13858 -16.67597 -16.04240 -15.61637 -14.89994 -14.70741 -14.47688 -14.20489 -13.99744 -13.45820 -13.33270 -13.01112 -12.92499 -12.58952 -12.53965 -12.24855 -12.03877 -11.78775 -11.70740 -11.65739 -11.49936 -11.31073 -11.13302 -11.02987 -10.93275 -10.75746 -10.63208 -10.41413 -10.30054 -10.10531 -10.03148 -9.65169 -8.99126 -8.74551 -8.06641 -7.78209 -6.25494 -4.26341 3.13258 3.20279 3.22859 3.29203 3.73719 4.22078 4.42526 4.65437 4.72378 4.94093 5.03609 5.12148 5.19622 5.23294 5.34796 5.36419 5.43052 5.56259 5.59169 5.66578 5.79089 5.86950 5.90844 5.95685 5.97721 5.99290 6.03451 6.05759 6.07034 6.26907 6.30986 6.33355 6.37512 6.39915 6.44148 6.52615 6.55667 6.63557 7.08368 7.20601 7.36909 7.40131 7.66454 8.07641 8.37165 8.78794 8.89597 9.33374 10.86824 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016655 B = 0.005480 C = 0.004700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.728128 B = 5108.476926 C = 5955.441970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.075 3.925 3 H 0.065 0.935 4 N -0.665 5.665 5 C 0.092 3.908 6 H 0.079 0.921 7 C -0.154 4.154 8 C -0.114 4.114 9 C -0.120 4.120 10 C -0.115 4.115 11 C -0.076 4.076 12 H 0.076 0.924 13 C -0.149 4.149 14 C 0.514 3.486 15 O -0.559 6.559 16 N -0.595 5.595 17 C 0.097 3.903 18 C 0.205 3.795 19 C -0.538 4.538 20 H 0.080 0.920 21 C 0.078 3.922 22 N -0.888 5.888 23 Si 0.870 3.130 24 H -0.274 1.274 25 H -0.265 1.265 26 H -0.282 1.282 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.097 0.903 30 H 0.343 0.657 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.047 0.953 41 H 0.053 0.947 42 H 0.050 0.950 43 H 0.059 0.941 44 H 0.065 0.935 45 H 0.036 0.964 46 H 0.028 0.972 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.505 -1.570 -13.549 16.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.037 4.037 3 H 0.083 0.917 4 N -0.297 5.297 5 C -0.018 4.018 6 H 0.097 0.903 7 C -0.193 4.193 8 C -0.153 4.153 9 C -0.158 4.158 10 C -0.153 4.153 11 C -0.095 4.095 12 H 0.095 0.905 13 C -0.206 4.206 14 C 0.302 3.698 15 O -0.438 6.438 16 N -0.326 5.326 17 C -0.047 4.047 18 C 0.083 3.917 19 C -0.576 4.576 20 H 0.098 0.902 21 C -0.126 4.126 22 N -0.525 5.525 23 Si 0.696 3.304 24 H -0.199 1.199 25 H -0.190 1.190 26 H -0.208 1.208 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.116 0.884 30 H 0.163 0.837 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.053 0.947 46 H 0.046 0.954 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.864 -2.303 -13.634 16.424 hybrid contribution 1.088 1.659 0.274 2.003 sum 9.952 -0.644 -13.360 16.672 Atomic orbital electron populations 1.21846 0.91523 1.02380 1.04016 1.21472 0.98424 0.96139 0.87653 0.91702 1.60529 1.33808 1.31873 1.03445 1.21639 0.96376 0.93034 0.90768 0.90271 1.22342 0.99278 0.99160 0.98485 1.21454 1.01592 0.97759 0.94450 1.21570 0.98158 0.98839 0.97203 1.21582 0.97490 0.98275 0.97945 1.21027 0.99699 0.95791 0.93002 0.90548 1.21900 0.98097 0.98982 1.01629 1.20483 0.77405 0.87017 0.84930 1.90609 1.52661 1.15188 1.85380 1.47851 1.61108 1.13028 1.10618 1.21434 0.98058 0.97286 0.87901 1.19926 0.97013 0.77066 0.97650 1.21321 0.96130 0.94687 1.45454 0.90151 1.24862 0.94744 0.98684 0.94315 1.69886 1.12851 1.24640 1.45131 0.86952 0.80426 0.83582 0.79404 1.19932 1.19017 1.20792 0.92937 0.92492 0.88410 0.83707 0.92203 0.91566 0.91961 0.92363 0.92454 0.91798 0.92043 0.92081 0.91833 0.93358 0.92780 0.93090 0.92193 0.91623 0.94664 0.95414 0.92306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.35 37.15 0.35 -2.32 16 2 C 0.08 1.37 2.13 -68.87 -0.15 1.23 16 3 H 0.07 1.19 5.00 -51.93 -0.26 0.93 16 4 N -0.66 -10.50 5.35 -100.96 -0.54 -11.04 16 5 C 0.09 1.21 1.98 -67.71 -0.13 1.08 16 6 H 0.08 1.12 7.14 -51.93 -0.37 0.75 16 7 C -0.15 -1.84 4.88 -26.74 -0.13 -1.98 16 8 C -0.11 -1.18 5.92 -26.73 -0.16 -1.34 16 9 C -0.12 -1.11 5.65 -26.73 -0.15 -1.26 16 10 C -0.11 -1.12 5.45 -26.74 -0.15 -1.27 16 11 C -0.08 -0.87 2.91 -90.62 -0.26 -1.13 16 12 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 13 C -0.15 -1.61 8.23 37.16 0.31 -1.31 16 14 C 0.51 10.64 6.65 -10.99 -0.07 10.57 16 15 O -0.56 -12.64 15.98 5.56 0.09 -12.55 16 16 N -0.59 -12.27 2.86 -182.96 -0.52 -12.79 16 17 C 0.10 1.74 10.40 59.84 0.62 2.36 16 18 C 0.20 4.46 4.11 -5.19 -0.02 4.44 16 19 C -0.54 -13.81 7.90 -34.44 -0.27 -14.08 16 20 H 0.08 2.33 8.02 -52.49 -0.42 1.91 16 21 C 0.08 2.05 5.47 -17.82 -0.10 1.96 16 22 N -0.89 -25.27 13.96 55.43 0.77 -24.50 16 23 Si 0.87 19.44 27.47 -169.99 -4.67 14.77 16 24 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.27 -5.58 6.54 56.52 0.37 -5.22 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H 0.05 0.90 7.46 -51.93 -0.39 0.51 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.10 2.16 5.84 -51.93 -0.30 1.86 16 30 H 0.34 5.51 6.97 -39.29 -0.27 5.24 16 31 H 0.06 0.79 7.43 -51.93 -0.39 0.41 16 32 H 0.07 0.77 6.42 -51.93 -0.33 0.44 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.58 6.43 -51.93 -0.33 0.25 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.78 7.21 -51.93 -0.37 0.40 16 40 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.05 0.55 4.81 -51.93 -0.25 0.30 16 42 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.06 1.02 7.62 -51.92 -0.40 0.62 16 44 H 0.06 1.05 7.86 -51.93 -0.41 0.64 16 45 H 0.04 0.76 4.76 -51.93 -0.25 0.51 16 46 H 0.03 0.59 7.32 -51.93 -0.38 0.21 16 47 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 349.27 15.07 5.26 5.26 Total: -1.00 -28.42 349.27 -8.02 -36.44 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -8.09 Total: 7.45 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -0.32 Total: -3.05 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: -0.29 Total: -48.33 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.09 Total: -12.55 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -4.67 Total: 14.77 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.42 -8.02 -36.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078595191.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.310 kcal (2) G-P(sol) polarization free energy of solvation -28.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds