Wall clock time and date at job start Tue Mar 31 2020 06:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.47273 * 2 1 4 4 N 1.46906 * 109.46921 * 240.00597 * 2 1 3 5 5 C 1.46902 * 110.99720 * 85.00248 * 4 2 1 6 6 H 1.08997 * 109.46984 * 324.99333 * 5 4 2 7 7 C 1.52992 * 109.47711 * 85.00151 * 5 4 2 8 8 C 1.52998 * 109.47700 * 179.97438 * 7 5 4 9 9 C 1.53005 * 109.46987 * 300.00244 * 8 7 5 10 10 C 1.52992 * 109.47100 * 59.99388 * 9 8 7 11 11 C 1.52998 * 109.47700 * 300.00175 * 10 9 8 12 12 H 1.09001 * 109.47827 * 180.02562 * 11 10 9 13 13 C 1.53003 * 109.46852 * 300.00203 * 11 10 9 14 14 C 1.50696 * 109.47460 * 120.00702 * 2 1 3 15 15 O 1.21281 * 120.00253 * 92.68888 * 14 2 1 16 16 N 1.34781 * 119.99995 * 272.69214 * 14 2 1 17 17 C 1.46494 * 120.00216 * 183.65242 * 16 14 2 18 18 C 1.46500 * 119.99851 * 3.65058 * 16 14 2 19 19 C 1.50710 * 109.46998 * 92.16643 * 18 16 14 20 20 H 1.07993 * 119.99372 * 0.02562 * 19 18 16 21 21 C 1.37877 * 119.99869 * 179.97438 * 19 18 16 22 22 N 1.31512 * 119.99696 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 120.00209 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47406 * 270.00172 * 23 21 19 25 25 H 1.48506 * 109.46855 * 29.99687 * 23 21 19 26 26 H 1.48497 * 109.47221 * 149.99725 * 23 21 19 27 27 H 1.09002 * 109.47783 * 57.08554 * 1 2 3 28 28 H 1.09004 * 109.47356 * 177.08755 * 1 2 3 29 29 H 1.09003 * 109.47304 * 297.08715 * 1 2 3 30 30 H 1.00902 * 110.99722 * 208.95183 * 4 2 1 31 31 H 1.09001 * 109.46784 * 299.99908 * 7 5 4 32 32 H 1.09003 * 109.47054 * 59.99050 * 7 5 4 33 33 H 1.09005 * 109.46481 * 59.99597 * 8 7 5 34 34 H 1.08991 * 109.47714 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.47281 * 179.97438 * 9 8 7 36 36 H 1.09003 * 109.46506 * 299.99862 * 9 8 7 37 37 H 1.08997 * 109.47564 * 60.00322 * 10 9 8 38 38 H 1.09005 * 109.47260 * 180.02562 * 10 9 8 39 39 H 1.09007 * 109.47208 * 179.97438 * 13 11 10 40 40 H 1.08997 * 109.47516 * 299.99681 * 13 11 10 41 41 H 1.09003 * 109.47081 * 59.99947 * 13 11 10 42 42 H 1.08995 * 109.47293 * 274.47053 * 17 16 14 43 43 H 1.09008 * 109.47155 * 34.46562 * 17 16 14 44 44 H 1.08995 * 109.47173 * 154.46773 * 17 16 14 45 45 H 1.09003 * 109.47218 * 332.17246 * 18 16 14 46 46 H 1.08994 * 109.47162 * 212.16697 * 18 16 14 47 47 H 0.97002 * 119.99956 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 -1.1996 5 6 2.0824 0.2229 -2.3469 6 1 1.2575 0.9331 -2.2906 7 6 3.4109 0.9811 -2.3224 8 6 3.4766 1.9339 -3.5177 9 6 3.3713 1.1313 -4.8161 10 6 2.0427 0.3731 -4.8405 11 6 1.9770 -0.5797 -3.6453 12 1 1.0307 -1.1203 -3.6629 13 6 3.1349 -1.5769 -3.7237 14 6 2.0323 -0.7105 1.2303 15 8 2.2810 -1.8968 1.1865 16 7 2.2053 -0.0277 2.3794 17 6 2.7690 -0.6995 3.5529 18 6 1.8296 1.3863 2.4549 19 6 0.4104 1.5033 2.9482 20 1 -0.1549 0.6134 3.1824 21 6 -0.1659 2.7465 3.1014 22 7 -1.4042 2.8486 3.5323 23 14 0.8122 4.2857 2.6970 24 1 1.5351 4.7458 3.9098 25 1 1.7914 3.9818 1.6226 26 1 -0.1121 5.3529 2.2369 27 1 -0.3635 0.5584 -0.8627 28 1 -0.3634 -1.0264 -0.0522 29 1 -0.3634 0.4679 0.9150 30 1 2.9172 -1.1204 -1.0289 31 1 3.4861 1.5526 -1.3973 32 1 4.2358 0.2708 -2.3786 33 1 2.6517 2.6443 -3.4617 34 1 4.4229 2.4744 -3.5000 35 1 3.4176 1.8101 -5.6676 36 1 4.1962 0.4209 -4.8719 37 1 1.2178 1.0833 -4.7846 38 1 1.9679 -0.1991 -5.7653 39 1 3.0884 -2.2555 -2.8719 40 1 3.0599 -2.1487 -4.6487 41 1 4.0814 -1.0366 -3.7062 42 1 1.9722 -1.2007 4.1024 43 1 3.5066 -1.4348 3.2312 44 1 3.2477 0.0370 4.1981 45 1 1.9086 1.8365 1.4654 46 1 2.4975 1.9034 3.1438 47 1 -1.8098 3.7232 3.6398 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078595191.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:51 Heat of formation + Delta-G solvation = -70.001257 kcal Electronic energy + Delta-G solvation = -24024.902657 eV Core-core repulsion = 20820.033059 eV Total energy + Delta-G solvation = -3204.869597 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.26428 -40.11409 -36.86443 -36.28800 -34.52529 -32.86262 -32.04960 -30.26639 -29.01279 -27.99135 -27.21971 -24.73106 -24.10012 -23.02792 -22.20663 -20.15562 -19.36396 -19.09285 -18.15364 -17.55314 -16.68323 -16.53087 -16.13475 -15.72309 -15.42854 -15.26743 -14.85745 -14.61699 -14.38468 -14.01191 -13.91601 -13.77286 -13.70896 -13.47661 -13.35554 -13.03715 -12.97214 -12.73085 -12.63492 -12.46525 -12.44158 -12.30316 -12.00586 -11.99420 -11.72124 -11.68529 -11.25457 -11.03963 -10.93121 -10.79543 -10.58304 -9.50045 -9.31400 -8.28846 -6.35032 1.39430 1.40544 1.49508 1.62503 2.19921 2.33977 3.03758 3.16713 3.59015 3.78004 3.83999 4.04200 4.07010 4.25097 4.34289 4.39213 4.44632 4.47184 4.52025 4.57986 4.58997 4.68781 4.70798 4.79450 4.82367 4.87730 4.90418 4.92240 4.99548 5.05589 5.09794 5.17344 5.23355 5.26659 5.39778 5.42856 5.44687 5.46670 5.52639 5.61500 5.68618 6.03707 6.17226 6.40134 6.56014 6.69278 7.19836 7.31342 8.87249 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016655 B = 0.005480 C = 0.004700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.728128 B = 5108.476926 C = 5955.441970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.084 3.916 3 H 0.069 0.931 4 N -0.666 5.666 5 C 0.091 3.909 6 H 0.069 0.931 7 C -0.149 4.149 8 C -0.113 4.113 9 C -0.117 4.117 10 C -0.111 4.111 11 C -0.074 4.074 12 H 0.063 0.937 13 C -0.144 4.144 14 C 0.509 3.491 15 O -0.581 6.581 16 N -0.601 5.601 17 C 0.092 3.908 18 C 0.212 3.788 19 C -0.533 4.533 20 H 0.031 0.969 21 C 0.023 3.977 22 N -0.940 5.940 23 Si 0.937 3.063 24 H -0.265 1.265 25 H -0.238 1.238 26 H -0.285 1.285 27 H 0.071 0.929 28 H 0.047 0.953 29 H 0.064 0.936 30 H 0.343 0.657 31 H 0.046 0.954 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.074 0.926 39 H 0.045 0.955 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.037 0.963 43 H 0.071 0.929 44 H 0.090 0.910 45 H 0.048 0.952 46 H 0.047 0.953 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.828 -0.266 -15.486 19.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.028 4.028 3 H 0.087 0.913 4 N -0.299 5.299 5 C -0.019 4.019 6 H 0.087 0.913 7 C -0.188 4.188 8 C -0.151 4.151 9 C -0.154 4.154 10 C -0.149 4.149 11 C -0.093 4.093 12 H 0.081 0.919 13 C -0.201 4.201 14 C 0.297 3.703 15 O -0.462 6.462 16 N -0.331 5.331 17 C -0.051 4.051 18 C 0.090 3.910 19 C -0.571 4.571 20 H 0.049 0.951 21 C -0.177 4.177 22 N -0.579 5.579 23 Si 0.760 3.240 24 H -0.189 1.189 25 H -0.161 1.161 26 H -0.211 1.211 27 H 0.090 0.910 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.163 0.837 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.064 0.936 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.056 0.944 43 H 0.089 0.911 44 H 0.108 0.892 45 H 0.066 0.934 46 H 0.065 0.935 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.211 -1.014 -15.576 19.219 hybrid contribution 0.297 1.136 0.905 1.482 sum 11.509 0.122 -14.672 18.647 Atomic orbital electron populations 1.21694 0.92457 1.01639 1.03062 1.21321 0.97480 0.96233 0.87762 0.91336 1.60521 1.33867 1.32458 1.03010 1.21735 0.96892 0.92836 0.90420 0.91251 1.22282 0.98433 0.99310 0.98816 1.21456 1.02044 0.97451 0.94140 1.21558 0.97796 0.98990 0.97053 1.21562 0.97923 0.97991 0.97452 1.20998 0.99368 0.96069 0.92831 0.91881 1.21854 0.98149 0.98636 1.01495 1.20931 0.76854 0.86880 0.85640 1.90588 1.53628 1.16117 1.85857 1.47960 1.60943 1.12824 1.11395 1.21590 0.97887 0.98139 0.87440 1.19801 0.94747 0.78059 0.98396 1.21378 0.97735 0.93028 1.44961 0.95111 1.25724 0.95598 1.02294 0.94052 1.70048 1.15119 1.25567 1.47189 0.85876 0.79258 0.78701 0.80206 1.18948 1.16140 1.21077 0.91038 0.93431 0.91719 0.83726 0.93509 0.91066 0.92318 0.91302 0.90982 0.91285 0.92228 0.90742 0.93623 0.92087 0.91925 0.94427 0.91069 0.89181 0.93391 0.93470 0.92283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.06 9.35 71.98 0.67 -4.39 16 2 C 0.08 3.05 2.13 44.16 0.09 3.15 16 3 H 0.07 2.42 5.00 -2.38 -0.01 2.41 16 4 N -0.67 -20.64 5.35 -473.31 -2.53 -23.18 16 5 C 0.09 2.26 1.98 44.91 0.09 2.35 16 6 H 0.07 1.87 7.14 -2.39 -0.02 1.85 16 7 C -0.15 -3.28 4.88 30.59 0.15 -3.13 16 8 C -0.11 -2.01 5.92 30.60 0.18 -1.83 16 9 C -0.12 -1.78 5.65 30.59 0.17 -1.60 16 10 C -0.11 -1.88 5.45 30.59 0.17 -1.71 16 11 C -0.07 -1.56 2.91 -10.79 -0.03 -1.59 16 12 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 13 C -0.14 -2.85 8.23 71.98 0.59 -2.25 16 14 C 0.51 21.01 6.65 87.66 0.58 21.59 16 15 O -0.58 -26.33 15.98 -3.03 -0.05 -26.38 16 16 N -0.60 -24.47 2.86 -851.14 -2.43 -26.90 16 17 C 0.09 3.26 10.40 127.77 1.33 4.58 16 18 C 0.21 8.96 4.11 85.64 0.35 9.31 16 19 C -0.53 -27.80 7.90 25.60 0.20 -27.60 16 20 H 0.03 1.87 8.02 -2.91 -0.02 1.85 16 21 C 0.02 1.19 5.47 84.66 0.46 1.66 16 22 N -0.94 -54.95 13.96 21.45 0.30 -54.66 16 23 Si 0.94 39.01 27.47 68.60 1.88 40.89 16 24 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 25 H -0.24 -8.81 6.54 99.48 0.65 -8.16 16 26 H -0.29 -11.97 7.11 99.48 0.71 -11.26 16 27 H 0.07 2.45 7.46 -2.39 -0.02 2.43 16 28 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 29 H 0.06 2.96 5.84 -2.39 -0.01 2.95 16 30 H 0.34 10.78 6.97 -89.69 -0.63 10.16 16 31 H 0.05 1.15 7.43 -2.39 -0.02 1.13 16 32 H 0.07 1.49 6.42 -2.39 -0.02 1.47 16 33 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 34 H 0.07 1.10 8.14 -2.39 -0.02 1.09 16 35 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.07 1.01 6.43 -2.39 -0.02 0.99 16 37 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.07 1.08 8.14 -2.38 -0.02 1.07 16 39 H 0.04 1.06 7.21 -2.38 -0.02 1.05 16 40 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.06 1.12 4.81 -2.39 -0.01 1.11 16 42 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.07 2.35 7.62 -2.38 -0.02 2.33 16 44 H 0.09 2.71 7.86 -2.39 -0.02 2.69 16 45 H 0.05 1.94 4.76 -2.39 -0.01 1.93 16 46 H 0.05 1.85 7.32 -2.39 -0.02 1.84 16 47 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 Total: -1.00 -62.46 349.27 2.45 -60.00 By element: Atomic # 1 Polarization: 31.42 SS G_CDS: 0.27 Total: 31.68 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: 5.02 Total: -1.46 kcal Atomic # 7 Polarization: -100.07 SS G_CDS: -4.67 Total: -104.73 kcal Atomic # 8 Polarization: -26.33 SS G_CDS: -0.05 Total: -26.38 kcal Atomic # 14 Polarization: 39.01 SS G_CDS: 1.88 Total: 40.89 kcal Total: -62.46 2.45 -60.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078595191.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.999 kcal (2) G-P(sol) polarization free energy of solvation -62.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds