Wall clock time and date at job start Tue Mar 31 2020 06:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09006 * 109.46780 * 2 1 4 4 N 1.46893 * 109.46669 * 240.00122 * 2 1 3 5 5 C 1.46906 * 111.00194 * 85.00164 * 4 2 1 6 6 H 1.09002 * 109.47045 * 324.99651 * 5 4 2 7 7 C 1.52997 * 109.46993 * 84.99661 * 5 4 2 8 8 C 1.53004 * 109.46989 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47258 * 300.00385 * 8 7 5 10 10 C 1.52998 * 109.47299 * 59.99518 * 9 8 7 11 11 C 1.52996 * 109.47004 * 204.99971 * 5 4 2 12 12 H 1.08996 * 109.47245 * 299.99392 * 11 5 4 13 13 C 1.52997 * 109.47498 * 60.00000 * 11 5 4 14 14 C 1.50697 * 109.47049 * 119.99966 * 2 1 3 15 15 O 1.21279 * 119.99534 * 106.08519 * 14 2 1 16 16 N 1.34770 * 120.00362 * 286.08693 * 14 2 1 17 17 C 1.46500 * 119.99741 * 5.02814 * 16 14 2 18 18 C 1.46496 * 120.00356 * 185.02913 * 16 14 2 19 19 C 1.50700 * 109.47294 * 269.99993 * 18 16 14 20 20 H 1.08007 * 119.99712 * 0.27072 * 19 18 16 21 21 C 1.37872 * 120.00146 * 179.97438 * 19 18 16 22 22 N 1.31514 * 120.00315 * 359.97438 * 21 19 18 23 23 Si 1.86809 * 120.00015 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.46819 * 89.99906 * 23 21 19 25 25 H 1.48495 * 109.46893 * 209.99848 * 23 21 19 26 26 H 1.48503 * 109.47009 * 329.99952 * 23 21 19 27 27 H 1.09004 * 109.46492 * 290.28044 * 1 2 3 28 28 H 1.08998 * 109.47308 * 50.27789 * 1 2 3 29 29 H 1.08996 * 109.47309 * 170.27947 * 1 2 3 30 30 H 1.00902 * 111.00652 * 321.04889 * 4 2 1 31 31 H 1.08998 * 109.47534 * 300.00068 * 7 5 4 32 32 H 1.08996 * 109.47369 * 60.00539 * 7 5 4 33 33 H 1.09001 * 109.46967 * 179.97438 * 8 7 5 34 34 H 1.09002 * 109.47129 * 59.99941 * 8 7 5 35 35 H 1.09002 * 109.46688 * 299.99826 * 9 8 7 36 36 H 1.08999 * 109.47000 * 180.02562 * 9 8 7 37 37 H 1.09006 * 109.47139 * 180.02562 * 10 9 8 38 38 H 1.09002 * 109.46999 * 60.00498 * 10 9 8 39 39 H 1.09002 * 109.47233 * 59.99902 * 13 11 5 40 40 H 1.09006 * 109.47274 * 180.02562 * 13 11 5 41 41 H 1.08996 * 109.46822 * 299.99902 * 13 11 5 42 42 H 1.09002 * 109.47355 * 267.52080 * 17 16 14 43 43 H 1.08998 * 109.47489 * 27.51959 * 17 16 14 44 44 H 1.09007 * 109.47048 * 147.52909 * 17 16 14 45 45 H 1.09000 * 109.47725 * 149.99362 * 18 16 14 46 46 H 1.09001 * 109.46947 * 29.99983 * 18 16 14 47 47 H 0.96996 * 120.00047 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 2.0824 0.2227 -2.3469 6 1 1.2576 0.9330 -2.2907 7 6 3.4111 0.9809 -2.3224 8 6 3.4762 1.9345 -3.5172 9 6 3.3703 1.1327 -4.8160 10 6 2.0417 0.3744 -4.8404 11 6 1.9769 -0.5796 -3.6454 12 1 2.8017 -1.2899 -3.7017 13 6 0.6482 -1.3379 -3.6699 14 6 2.0324 -0.7104 1.2304 15 8 2.5088 -1.8217 1.1369 16 7 1.9521 -0.1108 2.4348 17 6 1.2778 1.1832 2.5652 18 6 2.5391 -0.7530 3.6134 19 6 1.5105 -1.6393 4.2672 20 1 0.5200 -1.7199 3.8442 21 6 1.8357 -2.3520 5.4017 22 7 3.0438 -2.2588 5.9131 23 14 0.5604 -3.4501 6.2126 24 1 0.6417 -4.8147 5.6327 25 1 0.8211 -3.5164 7.6730 26 1 -0.7953 -2.8919 5.9765 27 1 -0.3632 0.3562 0.9640 28 1 -0.3634 0.6567 -0.7904 29 1 -0.3634 -1.0129 -0.1735 30 1 1.4495 -1.4979 -1.4101 31 1 3.4863 1.5525 -1.3973 32 1 4.2359 0.2706 -2.3787 33 1 4.4226 2.4750 -3.4994 34 1 2.6514 2.6448 -3.4605 35 1 4.1952 0.4224 -4.8726 36 1 3.4172 1.8120 -5.6671 37 1 1.9665 -0.1971 -5.7656 38 1 1.2169 1.0848 -4.7838 39 1 -0.1766 -0.6275 -3.6137 40 1 0.5733 -1.9098 -4.5948 41 1 0.6017 -2.0168 -2.8185 42 1 2.0081 1.9857 2.4608 43 1 0.5200 1.2782 1.7875 44 1 0.8037 1.2488 3.5446 45 1 2.8625 0.0110 4.3203 46 1 3.3966 -1.3539 3.3105 47 1 3.2724 -2.7600 6.7115 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078595199.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:53 Heat of formation + Delta-G solvation = -72.546188 kcal Electronic energy + Delta-G solvation = -23475.533562 eV Core-core repulsion = 20270.553608 eV Total energy + Delta-G solvation = -3204.979954 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.04904 -39.86596 -36.62200 -36.31767 -34.70683 -33.52617 -31.97980 -29.80270 -28.77058 -27.47771 -26.91254 -25.72634 -23.95866 -22.37989 -22.01555 -20.73718 -19.88099 -18.66434 -18.06589 -17.26345 -16.47948 -16.44373 -16.04772 -15.61956 -15.41918 -15.30496 -14.88426 -14.62681 -14.55715 -14.21888 -13.75603 -13.55410 -13.50774 -13.28836 -13.26545 -13.15999 -12.95153 -12.79460 -12.68249 -12.55892 -12.34392 -12.28302 -12.14448 -12.04451 -11.73629 -11.67308 -11.35776 -11.10599 -10.86697 -10.65166 -10.42455 -9.38101 -9.23876 -8.21683 -6.36872 1.35392 1.39162 1.48640 1.92103 2.28027 2.43409 3.07114 3.24169 3.70340 3.73818 3.85959 4.01252 4.06773 4.12611 4.25280 4.34539 4.37176 4.45439 4.55342 4.61456 4.62198 4.68309 4.70623 4.74181 4.81964 4.91172 4.93675 5.00830 5.03039 5.10597 5.18559 5.20631 5.23410 5.27842 5.33515 5.38207 5.42849 5.43471 5.57404 5.61195 5.86226 6.07111 6.13628 6.46804 6.71505 6.86618 7.29669 7.58375 8.85254 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029694 B = 0.003674 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.711823 B = 7618.724401 C = 7900.209173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.085 3.915 3 H 0.114 0.886 4 N -0.687 5.687 5 C 0.099 3.901 6 H 0.059 0.941 7 C -0.111 4.111 8 C -0.113 4.113 9 C -0.120 4.120 10 C -0.105 4.105 11 C -0.091 4.091 12 H 0.060 0.940 13 C -0.151 4.151 14 C 0.499 3.501 15 O -0.585 6.585 16 N -0.613 5.613 17 C 0.068 3.932 18 C 0.261 3.739 19 C -0.539 4.539 20 H 0.053 0.947 21 C 0.005 3.995 22 N -0.930 5.930 23 Si 0.969 3.031 24 H -0.281 1.281 25 H -0.274 1.274 26 H -0.260 1.260 27 H 0.077 0.923 28 H 0.097 0.903 29 H 0.052 0.948 30 H 0.346 0.654 31 H 0.050 0.950 32 H 0.046 0.954 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.053 0.947 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.044 0.956 42 H 0.066 0.934 43 H 0.101 0.899 44 H 0.065 0.935 45 H 0.022 0.978 46 H -0.008 1.008 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.531 11.880 -21.674 25.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.028 4.028 3 H 0.132 0.868 4 N -0.321 5.321 5 C -0.010 4.010 6 H 0.077 0.923 7 C -0.149 4.149 8 C -0.151 4.151 9 C -0.157 4.157 10 C -0.143 4.143 11 C -0.110 4.110 12 H 0.078 0.922 13 C -0.208 4.208 14 C 0.287 3.713 15 O -0.465 6.465 16 N -0.345 5.345 17 C -0.074 4.074 18 C 0.140 3.860 19 C -0.578 4.578 20 H 0.071 0.929 21 C -0.194 4.194 22 N -0.570 5.570 23 Si 0.793 3.207 24 H -0.208 1.208 25 H -0.199 1.199 26 H -0.184 1.184 27 H 0.096 0.904 28 H 0.115 0.885 29 H 0.071 0.929 30 H 0.168 0.832 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.063 0.937 42 H 0.085 0.915 43 H 0.119 0.881 44 H 0.084 0.916 45 H 0.040 0.960 46 H 0.010 0.990 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.511 11.332 -21.399 24.833 hybrid contribution -0.826 -0.950 0.942 1.572 sum -6.337 10.382 -20.457 23.800 Atomic orbital electron populations 1.22554 0.93261 1.03157 1.04485 1.21378 0.95254 0.98074 0.88135 0.86805 1.60112 1.58969 1.09948 1.03071 1.21605 0.97304 0.93394 0.88683 0.92263 1.21578 0.97128 0.97886 0.98337 1.21504 1.02348 0.97462 0.93755 1.21553 0.97541 0.99046 0.97608 1.21542 0.97977 0.97843 0.96913 1.21258 0.98277 0.97310 0.94179 0.92178 1.21885 0.96796 1.00241 1.01896 1.21412 0.78647 0.86048 0.85240 1.90610 1.47377 1.21821 1.86660 1.48150 1.56218 1.22183 1.07981 1.22166 0.97854 0.83354 1.04031 1.18698 0.92901 0.92069 0.82354 1.21699 0.98559 1.27190 1.10357 0.92903 1.25898 0.97730 0.98092 0.97659 1.70058 1.20905 1.43125 1.22910 0.85400 0.79230 0.78521 0.77559 1.20755 1.19861 1.18437 0.90415 0.88456 0.92876 0.83156 0.93147 0.93480 0.91629 0.90988 0.92835 0.90568 0.90976 0.90961 0.91628 0.91400 0.93746 0.91516 0.88076 0.91565 0.96002 0.99032 0.92428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.06 8.75 71.98 0.63 -3.43 16 2 C 0.09 2.51 1.99 44.17 0.09 2.60 16 3 H 0.11 2.88 6.69 -2.38 -0.02 2.86 16 4 N -0.69 -19.86 5.58 -473.31 -2.64 -22.51 16 5 C 0.10 2.06 1.78 44.91 0.08 2.14 16 6 H 0.06 1.06 7.22 -2.39 -0.02 1.04 16 7 C -0.11 -2.40 5.41 30.59 0.17 -2.23 16 8 C -0.11 -1.73 5.92 30.60 0.18 -1.55 16 9 C -0.12 -1.65 5.92 30.59 0.18 -1.47 16 10 C -0.10 -1.40 5.21 30.61 0.16 -1.24 16 11 C -0.09 -1.64 2.39 -10.78 -0.03 -1.67 16 12 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 13 C -0.15 -2.45 8.96 71.98 0.64 -1.81 16 14 C 0.50 21.88 6.98 87.66 0.61 22.49 16 15 O -0.59 -32.42 16.12 -3.02 -0.05 -32.46 16 16 N -0.61 -27.15 2.86 -851.15 -2.43 -29.58 16 17 C 0.07 2.09 9.85 127.77 1.26 3.35 16 18 C 0.26 14.74 5.13 85.63 0.44 15.18 16 19 C -0.54 -32.11 9.39 25.60 0.24 -31.87 16 20 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 21 C 0.00 0.29 5.46 84.65 0.46 0.75 16 22 N -0.93 -57.85 13.29 21.45 0.28 -57.56 16 23 Si 0.97 45.95 29.54 68.60 2.03 47.98 16 24 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 25 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 26 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 27 H 0.08 1.80 5.51 -2.39 -0.01 1.79 16 28 H 0.10 1.55 7.59 -2.39 -0.02 1.53 16 29 H 0.05 1.35 7.94 -2.39 -0.02 1.33 16 30 H 0.35 10.16 5.78 -89.69 -0.52 9.64 16 31 H 0.05 1.17 7.43 -2.39 -0.02 1.15 16 32 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 38 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 41 H 0.04 0.86 6.21 -2.39 -0.01 0.85 16 42 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.10 2.37 4.19 -2.39 -0.01 2.36 16 44 H 0.07 2.13 8.09 -2.38 -0.02 2.11 16 45 H 0.02 1.25 8.07 -2.39 -0.02 1.23 16 46 H -0.01 -0.55 7.50 -2.39 -0.02 -0.57 16 47 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -76.52 359.73 2.72 -73.80 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 0.41 Total: 19.08 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: 5.12 Total: 1.25 kcal Atomic # 7 Polarization: -104.86 SS G_CDS: -4.79 Total: -109.65 kcal Atomic # 8 Polarization: -32.42 SS G_CDS: -0.05 Total: -32.46 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -76.52 2.72 -73.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078595199.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.256 kcal (2) G-P(sol) polarization free energy of solvation -76.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds