Wall clock time and date at job start Tue Mar 31 2020 06:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47433 * 2 1 4 4 N 1.46901 * 109.47124 * 240.00231 * 2 1 3 5 5 C 1.46891 * 111.00096 * 84.80464 * 4 2 1 6 6 H 1.09000 * 109.47285 * 348.50505 * 5 4 2 7 7 C 1.53003 * 109.47150 * 228.50591 * 5 4 2 8 8 C 1.52999 * 109.47259 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.46868 * 59.99997 * 8 7 5 10 10 C 1.52994 * 109.47332 * 300.00035 * 9 8 7 11 11 C 1.52999 * 109.47172 * 60.00151 * 10 9 8 12 12 H 1.09000 * 109.47329 * 60.00122 * 11 10 9 13 13 C 1.53003 * 109.47259 * 180.02562 * 11 10 9 14 14 C 1.50707 * 109.46777 * 120.00290 * 2 1 3 15 15 O 1.21276 * 119.99835 * 120.00563 * 14 2 1 16 16 N 1.34769 * 119.99990 * 299.99643 * 14 2 1 17 17 C 1.46505 * 120.00242 * 359.72796 * 16 14 2 18 18 C 1.46504 * 120.00188 * 180.02562 * 16 14 2 19 19 C 1.50693 * 109.47133 * 90.00292 * 18 16 14 20 20 H 1.08005 * 120.00463 * 359.97438 * 19 18 16 21 21 C 1.37882 * 119.99898 * 180.02562 * 19 18 16 22 22 N 1.31513 * 119.99845 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00024 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47069 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47126 * 119.99356 * 23 21 19 26 26 H 1.48494 * 109.47291 * 239.99631 * 23 21 19 27 27 H 1.08994 * 109.46975 * 307.49694 * 1 2 3 28 28 H 1.09006 * 109.46935 * 67.49688 * 1 2 3 29 29 H 1.08999 * 109.46981 * 187.49491 * 1 2 3 30 30 H 1.00906 * 111.00014 * 208.76161 * 4 2 1 31 31 H 1.09000 * 109.46956 * 300.00115 * 7 5 4 32 32 H 1.09000 * 109.46887 * 59.99872 * 7 5 4 33 33 H 1.09000 * 109.47329 * 300.00008 * 8 7 5 34 34 H 1.08997 * 109.47437 * 180.02562 * 8 7 5 35 35 H 1.09002 * 109.47111 * 179.97438 * 9 8 7 36 36 H 1.09004 * 109.47090 * 60.00385 * 9 8 7 37 37 H 1.09004 * 109.47319 * 300.00210 * 10 9 8 38 38 H 1.09000 * 109.47036 * 180.02562 * 10 9 8 39 39 H 1.08995 * 109.47480 * 181.83635 * 13 11 10 40 40 H 1.09000 * 109.46982 * 301.84130 * 13 11 10 41 41 H 1.08999 * 109.47052 * 61.83419 * 13 11 10 42 42 H 1.09007 * 109.46750 * 89.99443 * 17 16 14 43 43 H 1.08994 * 109.47552 * 209.99774 * 17 16 14 44 44 H 1.09003 * 109.46863 * 330.00135 * 17 16 14 45 45 H 1.09004 * 109.46728 * 210.00263 * 18 16 14 46 46 H 1.08998 * 109.46488 * 329.99725 * 18 16 14 47 47 H 0.96996 * 120.00067 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0781 0.2215 -2.3480 6 1 1.5561 1.1465 -2.1032 7 6 1.4106 -0.4361 -3.5575 8 6 1.4708 0.5161 -4.7536 9 6 2.9318 0.8277 -5.0842 10 6 3.5994 1.4852 -3.8748 11 6 3.5391 0.5331 -2.6787 12 1 4.0614 -0.3917 -2.9238 13 6 4.2061 1.1909 -1.4690 14 6 2.0323 -0.7105 1.2305 15 8 2.7296 -1.6965 1.1192 16 7 1.7068 -0.2501 2.4545 17 6 0.8695 0.9446 2.5890 18 6 2.1955 -0.9404 3.6508 19 6 3.5227 -0.3564 4.0607 20 1 3.9590 0.4482 3.4874 21 6 4.1808 -0.8500 5.1673 22 7 3.6499 -1.8302 5.8651 23 14 5.8265 -0.1266 5.6751 24 1 6.2034 0.9565 4.7316 25 1 5.7209 0.4275 7.0488 26 1 6.8637 -1.1890 5.6482 27 1 -0.3633 0.6255 0.8153 28 1 -0.3633 0.3933 -0.9495 29 1 -0.3633 -1.0189 0.1340 30 1 2.9189 -1.1178 -1.0297 31 1 1.9326 -1.3611 -3.8023 32 1 0.3696 -0.6577 -3.3220 33 1 0.9485 1.4408 -4.5085 34 1 0.9948 0.0478 -5.6151 35 1 2.9748 1.5057 -5.9366 36 1 3.4541 -0.0971 -5.3294 37 1 3.0771 2.4101 -3.6296 38 1 4.6401 1.7076 -4.1105 39 1 4.1923 0.5000 -0.6261 40 1 5.2376 1.4430 -1.7153 41 1 3.6638 2.0984 -1.2039 42 1 -0.1799 0.6512 2.6202 43 1 1.1280 1.4678 3.5096 44 1 1.0373 1.6036 1.7372 45 1 1.4774 -0.8152 4.4613 46 1 2.3168 -2.0016 3.4336 47 1 4.1127 -2.1772 6.6438 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078595201.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:57 Heat of formation + Delta-G solvation = -55.544818 kcal Electronic energy + Delta-G solvation = -23674.075856 eV Core-core repulsion = 20469.833137 eV Total energy + Delta-G solvation = -3204.242719 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.87750 -38.68722 -35.17357 -34.81177 -32.78059 -32.45225 -30.93257 -28.35280 -27.41607 -26.34528 -25.89359 -23.79520 -22.30069 -21.51316 -21.01234 -20.10655 -18.35080 -16.64396 -16.44194 -15.94262 -15.27482 -15.07515 -14.66431 -14.53285 -14.26534 -14.05710 -13.82532 -13.34730 -13.20113 -12.70455 -12.48476 -12.36141 -12.26113 -12.09575 -11.98489 -11.76614 -11.67066 -11.46285 -11.29126 -11.12756 -11.04008 -10.96099 -10.87501 -10.59032 -10.56285 -10.26071 -10.23766 -10.16863 -9.61507 -8.81212 -8.44718 -8.22146 -7.63789 -6.05087 -4.09946 3.28515 3.35651 3.38591 3.44228 3.82432 4.31776 4.44509 4.54999 4.66268 4.80036 4.99000 5.05587 5.13070 5.28171 5.29172 5.32451 5.35301 5.42147 5.44555 5.49695 5.58088 5.62488 5.69313 5.78327 5.82632 5.91432 5.92460 5.94657 5.96632 6.02221 6.05026 6.15747 6.18567 6.26808 6.27676 6.37517 6.40814 7.00051 7.23476 7.44941 7.53540 7.63244 7.91388 8.22721 8.42196 8.89254 9.08562 9.55214 11.02997 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023075 B = 0.004192 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.158332 B = 6678.053367 C = 7371.431353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.067 3.933 3 H 0.063 0.937 4 N -0.669 5.669 5 C 0.094 3.906 6 H 0.066 0.934 7 C -0.104 4.104 8 C -0.119 4.119 9 C -0.120 4.120 10 C -0.110 4.110 11 C -0.114 4.114 12 H 0.074 0.926 13 C -0.155 4.155 14 C 0.504 3.496 15 O -0.536 6.536 16 N -0.599 5.599 17 C 0.082 3.918 18 C 0.245 3.755 19 C -0.526 4.526 20 H 0.056 0.944 21 C 0.061 3.939 22 N -0.894 5.894 23 Si 0.897 3.103 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.282 1.282 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.357 0.643 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.052 0.948 42 H 0.048 0.952 43 H 0.072 0.928 44 H 0.057 0.943 45 H 0.032 0.968 46 H 0.044 0.956 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.773 8.627 -18.435 21.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.046 4.046 3 H 0.080 0.920 4 N -0.304 5.304 5 C -0.016 4.016 6 H 0.085 0.915 7 C -0.142 4.142 8 C -0.157 4.157 9 C -0.158 4.158 10 C -0.148 4.148 11 C -0.134 4.134 12 H 0.093 0.907 13 C -0.212 4.212 14 C 0.289 3.711 15 O -0.413 6.413 16 N -0.331 5.331 17 C -0.062 4.062 18 C 0.126 3.874 19 C -0.565 4.565 20 H 0.075 0.925 21 C -0.141 4.141 22 N -0.533 5.533 23 Si 0.725 3.275 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.209 1.209 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.181 0.819 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.091 0.909 44 H 0.075 0.925 45 H 0.050 0.950 46 H 0.062 0.938 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.980 7.712 -18.435 20.859 hybrid contribution 1.719 1.001 0.700 2.109 sum -4.261 8.713 -17.735 20.214 Atomic orbital electron populations 1.21952 0.93101 1.03070 1.01962 1.21532 0.97049 0.96345 0.89698 0.91975 1.60457 1.35479 1.31608 1.02823 1.21665 0.94163 0.94574 0.91232 0.91547 1.21517 1.01068 0.98373 0.93263 1.21551 0.96370 0.99667 0.98137 1.21546 0.96136 1.00613 0.97458 1.21542 1.00457 0.98277 0.94496 1.21761 0.96870 0.99346 0.95400 0.90732 1.21922 1.00500 1.00785 0.98013 1.20322 0.80969 0.85221 0.84544 1.90652 1.38092 1.26590 1.85941 1.48085 1.49798 1.27962 1.07285 1.21795 0.94005 0.88066 1.02354 1.19294 0.94168 0.93760 0.80180 1.21458 1.04841 1.18988 1.11176 0.92530 1.24938 0.97930 0.94953 0.96284 1.69941 1.38935 1.26068 1.18341 0.86454 0.83794 0.79036 0.78194 1.19873 1.20936 1.20851 0.91274 0.92283 0.91826 0.81936 0.91787 0.91592 0.92257 0.92108 0.92331 0.92005 0.92112 0.92126 0.92127 0.92464 0.92885 0.93342 0.90890 0.92458 0.94998 0.93803 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.00 37.16 0.33 -1.53 16 2 C 0.07 1.04 1.43 -68.86 -0.10 0.94 16 3 H 0.06 0.90 6.31 -51.93 -0.33 0.57 16 4 N -0.67 -9.94 5.75 -100.95 -0.58 -10.52 16 5 C 0.09 1.09 1.79 -67.71 -0.12 0.97 16 6 H 0.07 0.76 7.26 -51.93 -0.38 0.38 16 7 C -0.10 -1.08 5.53 -26.73 -0.15 -1.23 16 8 C -0.12 -1.01 5.92 -26.73 -0.16 -1.17 16 9 C -0.12 -1.00 5.92 -26.73 -0.16 -1.16 16 10 C -0.11 -1.00 5.20 -26.73 -0.14 -1.14 16 11 C -0.11 -1.27 2.05 -90.62 -0.19 -1.45 16 12 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 13 C -0.15 -1.92 8.23 37.16 0.31 -1.62 16 14 C 0.50 10.55 7.09 -10.99 -0.08 10.47 16 15 O -0.54 -13.52 15.23 5.56 0.08 -13.43 16 16 N -0.60 -12.75 2.86 -182.95 -0.52 -13.28 16 17 C 0.08 1.30 8.80 59.85 0.53 1.82 16 18 C 0.25 6.47 5.16 -5.20 -0.03 6.44 16 19 C -0.53 -14.97 9.39 -34.44 -0.32 -15.29 16 20 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 21 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 22 N -0.89 -26.69 13.29 55.43 0.74 -25.96 16 23 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 24 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 27 H 0.07 0.81 4.78 -51.93 -0.25 0.56 16 28 H 0.06 0.66 7.82 -51.93 -0.41 0.26 16 29 H 0.06 0.92 8.13 -51.93 -0.42 0.50 16 30 H 0.36 6.07 6.08 -39.29 -0.24 5.83 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.92 6.77 -51.93 -0.35 0.57 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.05 0.62 8.13 -51.93 -0.42 0.20 16 42 H 0.05 0.66 7.11 -51.93 -0.37 0.29 16 43 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 44 H 0.06 0.76 5.94 -51.93 -0.31 0.45 16 45 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 46 H 0.04 1.31 7.42 -51.93 -0.39 0.92 16 47 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 358.36 15.07 5.40 5.40 Total: -1.00 -31.76 358.36 -8.74 -40.50 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -8.47 Total: 2.67 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -0.37 Total: -2.29 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: -0.37 Total: -49.75 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: 0.08 Total: -13.43 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.76 -8.74 -40.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078595201.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.046 kcal (2) G-P(sol) polarization free energy of solvation -31.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds