Wall clock time and date at job start Tue Mar 31 2020 06:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47433 * 2 1 4 4 N 1.46901 * 109.47124 * 240.00231 * 2 1 3 5 5 C 1.46891 * 111.00096 * 84.80464 * 4 2 1 6 6 H 1.09000 * 109.47285 * 348.50505 * 5 4 2 7 7 C 1.53003 * 109.47150 * 228.50591 * 5 4 2 8 8 C 1.52999 * 109.47259 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.46868 * 59.99997 * 8 7 5 10 10 C 1.52994 * 109.47332 * 300.00035 * 9 8 7 11 11 C 1.52999 * 109.47172 * 60.00151 * 10 9 8 12 12 H 1.09000 * 109.47329 * 60.00122 * 11 10 9 13 13 C 1.53003 * 109.47259 * 180.02562 * 11 10 9 14 14 C 1.50707 * 109.46777 * 120.00290 * 2 1 3 15 15 O 1.21276 * 119.99835 * 120.00563 * 14 2 1 16 16 N 1.34769 * 119.99990 * 299.99643 * 14 2 1 17 17 C 1.46505 * 120.00242 * 359.72796 * 16 14 2 18 18 C 1.46504 * 120.00188 * 180.02562 * 16 14 2 19 19 C 1.50693 * 109.47133 * 90.00292 * 18 16 14 20 20 H 1.08005 * 120.00463 * 359.97438 * 19 18 16 21 21 C 1.37882 * 119.99898 * 180.02562 * 19 18 16 22 22 N 1.31513 * 119.99845 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00024 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47069 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47126 * 119.99356 * 23 21 19 26 26 H 1.48494 * 109.47291 * 239.99631 * 23 21 19 27 27 H 1.08994 * 109.46975 * 307.49694 * 1 2 3 28 28 H 1.09006 * 109.46935 * 67.49688 * 1 2 3 29 29 H 1.08999 * 109.46981 * 187.49491 * 1 2 3 30 30 H 1.00906 * 111.00014 * 208.76161 * 4 2 1 31 31 H 1.09000 * 109.46956 * 300.00115 * 7 5 4 32 32 H 1.09000 * 109.46887 * 59.99872 * 7 5 4 33 33 H 1.09000 * 109.47329 * 300.00008 * 8 7 5 34 34 H 1.08997 * 109.47437 * 180.02562 * 8 7 5 35 35 H 1.09002 * 109.47111 * 179.97438 * 9 8 7 36 36 H 1.09004 * 109.47090 * 60.00385 * 9 8 7 37 37 H 1.09004 * 109.47319 * 300.00210 * 10 9 8 38 38 H 1.09000 * 109.47036 * 180.02562 * 10 9 8 39 39 H 1.08995 * 109.47480 * 181.83635 * 13 11 10 40 40 H 1.09000 * 109.46982 * 301.84130 * 13 11 10 41 41 H 1.08999 * 109.47052 * 61.83419 * 13 11 10 42 42 H 1.09007 * 109.46750 * 89.99443 * 17 16 14 43 43 H 1.08994 * 109.47552 * 209.99774 * 17 16 14 44 44 H 1.09003 * 109.46863 * 330.00135 * 17 16 14 45 45 H 1.09004 * 109.46728 * 210.00263 * 18 16 14 46 46 H 1.08998 * 109.46488 * 329.99725 * 18 16 14 47 47 H 0.96996 * 120.00067 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0781 0.2215 -2.3480 6 1 1.5561 1.1465 -2.1032 7 6 1.4106 -0.4361 -3.5575 8 6 1.4708 0.5161 -4.7536 9 6 2.9318 0.8277 -5.0842 10 6 3.5994 1.4852 -3.8748 11 6 3.5391 0.5331 -2.6787 12 1 4.0614 -0.3917 -2.9238 13 6 4.2061 1.1909 -1.4690 14 6 2.0323 -0.7105 1.2305 15 8 2.7296 -1.6965 1.1192 16 7 1.7068 -0.2501 2.4545 17 6 0.8695 0.9446 2.5890 18 6 2.1955 -0.9404 3.6508 19 6 3.5227 -0.3564 4.0607 20 1 3.9590 0.4482 3.4874 21 6 4.1808 -0.8500 5.1673 22 7 3.6499 -1.8302 5.8651 23 14 5.8265 -0.1266 5.6751 24 1 6.2034 0.9565 4.7316 25 1 5.7209 0.4275 7.0488 26 1 6.8637 -1.1890 5.6482 27 1 -0.3633 0.6255 0.8153 28 1 -0.3633 0.3933 -0.9495 29 1 -0.3633 -1.0189 0.1340 30 1 2.9189 -1.1178 -1.0297 31 1 1.9326 -1.3611 -3.8023 32 1 0.3696 -0.6577 -3.3220 33 1 0.9485 1.4408 -4.5085 34 1 0.9948 0.0478 -5.6151 35 1 2.9748 1.5057 -5.9366 36 1 3.4541 -0.0971 -5.3294 37 1 3.0771 2.4101 -3.6296 38 1 4.6401 1.7076 -4.1105 39 1 4.1923 0.5000 -0.6261 40 1 5.2376 1.4430 -1.7153 41 1 3.6638 2.0984 -1.2039 42 1 -0.1799 0.6512 2.6202 43 1 1.1280 1.4678 3.5096 44 1 1.0373 1.6036 1.7372 45 1 1.4774 -0.8152 4.4613 46 1 2.3168 -2.0016 3.4336 47 1 4.1127 -2.1772 6.6438 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078595201.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:56 Heat of formation + Delta-G solvation = -75.977918 kcal Electronic energy + Delta-G solvation = -23674.961902 eV Core-core repulsion = 20469.833137 eV Total energy + Delta-G solvation = -3205.128765 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.20866 -39.88106 -36.71767 -36.21115 -34.75357 -33.43509 -32.05095 -29.80217 -28.85289 -27.61864 -27.04905 -25.58265 -23.56279 -22.56822 -21.95307 -21.02010 -19.84069 -18.72426 -17.93255 -17.43813 -16.73274 -16.41870 -16.17435 -15.52552 -15.42389 -15.11521 -14.94447 -14.63051 -14.39022 -14.22426 -13.90777 -13.54612 -13.50091 -13.35378 -13.21996 -13.03646 -12.91080 -12.79551 -12.71782 -12.58629 -12.49251 -12.30260 -12.15323 -11.93172 -11.76492 -11.69707 -11.35389 -11.11099 -11.06037 -10.67179 -10.47568 -9.45079 -9.31943 -8.24539 -6.39660 1.34138 1.36698 1.48205 1.79891 2.24918 2.40934 3.04908 3.18022 3.62620 3.70260 3.84709 3.96311 4.10383 4.21513 4.24984 4.37011 4.42053 4.46477 4.54730 4.57732 4.64875 4.67348 4.73531 4.77741 4.84709 4.88375 4.94903 4.99764 5.00905 5.13345 5.13890 5.19733 5.23521 5.31346 5.32532 5.34348 5.39883 5.48995 5.53530 5.59021 5.80920 6.03546 6.13322 6.35282 6.67864 6.77255 7.25566 7.44377 8.82799 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023075 B = 0.004192 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.158332 B = 6678.053367 C = 7371.431353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.082 3.918 3 H 0.080 0.920 4 N -0.679 5.679 5 C 0.095 3.905 6 H 0.079 0.921 7 C -0.101 4.101 8 C -0.114 4.114 9 C -0.119 4.119 10 C -0.105 4.105 11 C -0.110 4.110 12 H 0.060 0.940 13 C -0.151 4.151 14 C 0.493 3.507 15 O -0.591 6.591 16 N -0.606 5.606 17 C 0.075 3.925 18 C 0.260 3.740 19 C -0.542 4.542 20 H 0.052 0.948 21 C 0.008 3.992 22 N -0.928 5.928 23 Si 0.968 3.032 24 H -0.267 1.267 25 H -0.267 1.267 26 H -0.282 1.282 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.044 0.956 30 H 0.342 0.658 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.055 0.945 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.025 0.975 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.076 0.924 43 H 0.067 0.933 44 H 0.091 0.909 45 H 0.024 0.976 46 H -0.004 1.004 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.301 11.411 -20.082 23.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.031 4.031 3 H 0.098 0.902 4 N -0.312 5.312 5 C -0.015 4.015 6 H 0.097 0.903 7 C -0.139 4.139 8 C -0.152 4.152 9 C -0.156 4.156 10 C -0.143 4.143 11 C -0.130 4.130 12 H 0.079 0.921 13 C -0.209 4.209 14 C 0.282 3.718 15 O -0.472 6.472 16 N -0.337 5.337 17 C -0.067 4.067 18 C 0.138 3.862 19 C -0.580 4.580 20 H 0.070 0.930 21 C -0.191 4.191 22 N -0.568 5.568 23 Si 0.792 3.208 24 H -0.192 1.192 25 H -0.192 1.192 26 H -0.208 1.208 27 H 0.106 0.894 28 H 0.104 0.896 29 H 0.063 0.937 30 H 0.163 0.837 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.044 0.956 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.095 0.905 43 H 0.086 0.914 44 H 0.109 0.891 45 H 0.042 0.958 46 H 0.014 0.986 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.557 10.545 -20.102 23.628 hybrid contribution 1.860 0.092 1.204 2.217 sum -4.697 10.637 -18.899 22.189 Atomic orbital electron populations 1.21961 0.90710 1.02598 1.04199 1.21522 0.98569 0.96001 0.86988 0.90231 1.60589 1.34597 1.32658 1.03405 1.21779 0.94792 0.94467 0.90416 0.90331 1.21487 1.00478 0.98345 0.93583 1.21524 0.96692 0.99549 0.97404 1.21546 0.95814 1.00686 0.97573 1.21512 1.01124 0.97959 0.93691 1.21709 0.96190 0.99263 0.95813 0.92135 1.21885 1.01355 1.00290 0.97323 1.21382 0.79892 0.84745 0.85822 1.90614 1.40509 1.29208 1.86845 1.48099 1.50312 1.29253 1.06040 1.22122 0.94499 0.86393 1.03654 1.18754 0.93787 0.91666 0.81970 1.21706 1.05852 1.19053 1.11430 0.92974 1.25866 1.01826 0.95225 0.96226 1.70058 1.40656 1.27208 1.18842 0.85362 0.78680 0.78267 0.78456 1.19165 1.19242 1.20788 0.89432 0.89607 0.93655 0.83711 0.93150 0.91760 0.91207 0.91046 0.90647 0.92606 0.91164 0.91674 0.95624 0.91872 0.91877 0.90526 0.91450 0.89058 0.95753 0.98625 0.92368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 9.00 71.98 0.65 -2.58 16 2 C 0.08 2.46 1.43 44.17 0.06 2.52 16 3 H 0.08 2.11 6.31 -2.39 -0.02 2.10 16 4 N -0.68 -20.07 5.75 -473.30 -2.72 -22.79 16 5 C 0.09 2.05 1.79 44.92 0.08 2.13 16 6 H 0.08 1.53 7.26 -2.39 -0.02 1.52 16 7 C -0.10 -1.92 5.53 30.60 0.17 -1.75 16 8 C -0.11 -1.59 5.92 30.59 0.18 -1.41 16 9 C -0.12 -1.65 5.92 30.59 0.18 -1.47 16 10 C -0.10 -1.65 5.20 30.59 0.16 -1.49 16 11 C -0.11 -2.32 2.05 -10.79 -0.02 -2.34 16 12 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 13 C -0.15 -3.64 8.23 71.98 0.59 -3.05 16 14 C 0.49 21.17 7.09 87.66 0.62 21.79 16 15 O -0.59 -31.58 15.23 -3.02 -0.05 -31.63 16 16 N -0.61 -26.18 2.86 -851.12 -2.43 -28.61 16 17 C 0.08 2.25 8.80 127.77 1.12 3.37 16 18 C 0.26 14.32 5.16 85.63 0.44 14.76 16 19 C -0.54 -31.68 9.39 25.60 0.24 -31.44 16 20 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 21 C 0.01 0.44 5.46 84.66 0.46 0.90 16 22 N -0.93 -56.80 13.29 21.45 0.28 -56.51 16 23 Si 0.97 45.34 29.54 68.60 2.03 47.37 16 24 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 25 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 26 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 27 H 0.09 1.73 4.78 -2.39 -0.01 1.72 16 28 H 0.09 1.60 7.82 -2.38 -0.02 1.58 16 29 H 0.04 1.25 8.13 -2.39 -0.02 1.23 16 30 H 0.34 12.13 6.08 -89.69 -0.54 11.59 16 31 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 37 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 38 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.02 0.78 6.77 -2.39 -0.02 0.77 16 40 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.06 1.36 8.13 -2.39 -0.02 1.34 16 42 H 0.08 1.88 7.11 -2.38 -0.02 1.86 16 43 H 0.07 2.11 8.07 -2.39 -0.02 2.09 16 44 H 0.09 2.11 5.94 -2.39 -0.01 2.09 16 45 H 0.02 1.36 8.07 -2.38 -0.02 1.34 16 46 H 0.00 -0.28 7.42 -2.39 -0.02 -0.30 16 47 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -72.75 358.36 2.44 -70.31 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: 0.38 Total: 21.92 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: 4.94 Total: -0.06 kcal Atomic # 7 Polarization: -103.05 SS G_CDS: -4.87 Total: -107.91 kcal Atomic # 8 Polarization: -31.58 SS G_CDS: -0.05 Total: -31.63 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -72.75 2.44 -70.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078595201.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.667 kcal (2) G-P(sol) polarization free energy of solvation -72.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds