Wall clock time and date at job start Tue Mar 31 2020 06:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47755 * 2 1 4 4 N 1.46903 * 109.47372 * 239.99411 * 2 1 3 5 5 C 1.46890 * 111.00090 * 153.92888 * 4 2 1 6 6 H 1.09001 * 109.47600 * 33.79106 * 5 4 2 7 7 C 1.53001 * 109.47552 * 273.78559 * 5 4 2 8 8 C 1.52999 * 109.47531 * 180.02562 * 7 5 4 9 9 C 1.52994 * 109.46981 * 60.00287 * 8 7 5 10 10 C 1.53004 * 109.46992 * 299.99905 * 9 8 7 11 11 C 1.52999 * 109.47180 * 60.00217 * 10 9 8 12 12 H 1.08997 * 109.47055 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.46890 * 59.99851 * 11 10 9 14 14 C 1.50709 * 109.47083 * 119.99837 * 2 1 3 15 15 O 1.21276 * 120.00208 * 119.99747 * 14 2 1 16 16 N 1.34776 * 119.99934 * 299.99694 * 14 2 1 17 17 C 1.46507 * 119.99847 * 0.02562 * 16 14 2 18 18 C 1.46498 * 120.00292 * 179.97438 * 16 14 2 19 19 C 1.50701 * 109.46955 * 89.99720 * 18 16 14 20 20 H 1.07998 * 120.00028 * 0.02562 * 19 18 16 21 21 C 1.37878 * 119.99477 * 179.97438 * 19 18 16 22 22 N 1.31510 * 120.00577 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99466 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46920 * 60.00444 * 23 21 19 25 25 H 1.48499 * 109.47071 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47509 * 300.00115 * 23 21 19 27 27 H 1.09001 * 109.47082 * 306.92898 * 1 2 3 28 28 H 1.08996 * 109.47080 * 66.92596 * 1 2 3 29 29 H 1.08991 * 109.47395 * 186.92744 * 1 2 3 30 30 H 1.00896 * 110.99442 * 29.97645 * 4 2 1 31 31 H 1.09001 * 109.47114 * 300.00844 * 7 5 4 32 32 H 1.08998 * 109.47106 * 59.99860 * 7 5 4 33 33 H 1.08997 * 109.47153 * 300.00151 * 8 7 5 34 34 H 1.08997 * 109.47055 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.47059 * 180.02562 * 9 8 7 36 36 H 1.09005 * 109.47540 * 59.99734 * 9 8 7 37 37 H 1.09006 * 109.46840 * 180.02562 * 10 9 8 38 38 H 1.08997 * 109.47138 * 300.00133 * 10 9 8 39 39 H 1.09005 * 109.47167 * 60.00508 * 13 11 10 40 40 H 1.09002 * 109.46776 * 179.97438 * 13 11 10 41 41 H 1.08997 * 109.47369 * 299.99927 * 13 11 10 42 42 H 1.08996 * 109.47544 * 89.99925 * 17 16 14 43 43 H 1.09001 * 109.46738 * 210.00252 * 17 16 14 44 44 H 1.09003 * 109.46779 * 329.99529 * 17 16 14 45 45 H 1.08993 * 109.47297 * 210.00422 * 18 16 14 46 46 H 1.09000 * 109.46690 * 329.99964 * 18 16 14 47 47 H 0.96996 * 120.00007 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 -1.1994 5 6 3.3565 -0.2136 -1.5749 6 1 3.9175 0.0405 -0.6756 7 6 3.2236 1.0270 -2.4606 8 6 4.6161 1.5256 -2.8523 9 6 5.3536 0.4272 -3.6206 10 6 5.4865 -0.8134 -2.7350 11 6 4.0941 -1.3120 -2.3433 12 1 4.1889 -2.1960 -1.7127 13 6 3.3064 -1.6685 -3.6055 14 6 2.0323 -0.7104 1.2306 15 8 2.7295 -1.6965 1.1194 16 7 1.7067 -0.2499 2.4546 17 6 0.8640 0.9410 2.5890 18 6 2.1946 -0.9407 3.6509 19 6 3.5223 -0.3578 4.0612 20 1 3.9589 0.4470 3.4884 21 6 4.1792 -0.8514 5.1684 22 7 3.6473 -1.8311 5.8661 23 14 5.8247 -0.1284 5.6774 24 1 5.6598 1.3175 5.9730 25 1 6.3192 -0.8287 6.8899 26 1 6.8033 -0.2996 4.5738 27 1 -0.3633 0.6174 0.8215 28 1 -0.3633 0.4027 -0.9454 29 1 -0.3634 -1.0201 0.1239 30 1 1.3709 -0.5915 -1.9654 31 1 2.6627 0.7729 -3.3600 32 1 2.6978 1.8094 -1.9135 33 1 5.1773 1.7796 -1.9531 34 1 4.5213 2.4096 -3.4829 35 1 6.3457 0.7822 -3.8993 36 1 4.7923 0.1731 -4.5199 37 1 6.0124 -1.5958 -3.2822 38 1 6.0478 -0.5594 -1.8358 39 1 3.8318 -2.4511 -4.1528 40 1 2.3145 -2.0241 -3.3264 41 1 3.2116 -0.7847 -4.2364 42 1 -0.1838 0.6428 2.6225 43 1 1.1219 1.4667 3.5084 44 1 1.0273 1.5997 1.7359 45 1 1.4765 -0.8151 4.4612 46 1 2.3152 -2.0020 3.4336 47 1 4.1097 -2.1785 6.6448 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078595206.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:59 Heat of formation + Delta-G solvation = -48.162398 kcal Electronic energy + Delta-G solvation = -23859.130682 eV Core-core repulsion = 20655.208089 eV Total energy + Delta-G solvation = -3203.922593 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.82983 -38.63803 -35.19810 -34.65794 -32.63711 -31.93155 -31.03319 -28.27184 -27.40897 -26.09361 -25.91194 -23.92238 -22.37872 -22.00978 -21.41704 -18.51130 -18.22554 -16.59231 -16.25754 -16.09003 -15.58500 -14.95570 -14.76976 -14.42977 -14.07693 -13.82161 -13.60578 -13.32639 -13.06487 -12.88406 -12.71293 -12.32379 -12.25401 -12.09560 -11.87105 -11.66955 -11.59894 -11.30250 -11.17586 -11.10373 -11.04219 -10.84518 -10.81106 -10.51225 -10.34868 -10.11549 -10.06001 -9.96509 -9.58592 -8.82101 -8.39366 -7.99994 -7.51983 -5.99943 -4.04562 3.33446 3.38020 3.40636 3.60589 3.88297 4.38327 4.49262 4.70098 4.75980 4.93819 5.08393 5.17938 5.24978 5.28700 5.29527 5.34309 5.40635 5.42971 5.47515 5.60645 5.65289 5.65808 5.78944 5.80629 5.87848 5.90023 5.95960 6.00718 6.06394 6.07582 6.11386 6.15558 6.28417 6.30746 6.38063 6.52036 6.66807 7.06577 7.23807 7.51398 7.59537 7.65359 7.97514 8.29284 8.55650 8.96235 9.28431 9.60731 11.07950 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016155 B = 0.005040 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.741196 B = 5554.121401 C = 6467.476870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.067 3.933 3 H 0.061 0.939 4 N -0.658 5.658 5 C 0.100 3.900 6 H 0.078 0.922 7 C -0.150 4.150 8 C -0.115 4.115 9 C -0.119 4.119 10 C -0.117 4.117 11 C -0.076 4.076 12 H 0.082 0.918 13 C -0.146 4.146 14 C 0.508 3.492 15 O -0.518 6.518 16 N -0.607 5.607 17 C 0.084 3.916 18 C 0.248 3.752 19 C -0.524 4.524 20 H 0.055 0.945 21 C 0.061 3.939 22 N -0.895 5.895 23 Si 0.896 3.104 24 H -0.277 1.277 25 H -0.286 1.286 26 H -0.277 1.277 27 H 0.077 0.923 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.338 0.662 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.047 0.953 40 H 0.059 0.941 41 H 0.051 0.949 42 H 0.045 0.955 43 H 0.070 0.930 44 H 0.055 0.945 45 H 0.030 0.970 46 H 0.043 0.957 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.262 7.384 -18.051 19.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.046 4.046 3 H 0.079 0.921 4 N -0.289 5.289 5 C -0.010 4.010 6 H 0.096 0.904 7 C -0.189 4.189 8 C -0.153 4.153 9 C -0.157 4.157 10 C -0.155 4.155 11 C -0.095 4.095 12 H 0.101 0.899 13 C -0.203 4.203 14 C 0.293 3.707 15 O -0.393 6.393 16 N -0.341 5.341 17 C -0.061 4.061 18 C 0.128 3.872 19 C -0.563 4.563 20 H 0.073 0.927 21 C -0.141 4.141 22 N -0.534 5.534 23 Si 0.724 3.276 24 H -0.203 1.203 25 H -0.212 1.212 26 H -0.202 1.202 27 H 0.096 0.904 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.158 0.842 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.089 0.911 44 H 0.073 0.927 45 H 0.048 0.952 46 H 0.061 0.939 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.636 6.164 -17.564 18.966 hybrid contribution 0.695 1.421 0.110 1.585 sum -2.941 7.585 -17.454 19.257 Atomic orbital electron populations 1.22128 0.93281 1.03651 1.02574 1.21470 0.95688 0.95994 0.91494 0.92115 1.60079 1.03409 1.59768 1.05625 1.21548 0.90186 0.92016 0.97269 0.90351 1.22331 0.97651 0.98655 1.00273 1.21448 0.95941 0.97698 1.00211 1.21565 0.99843 0.95629 0.98649 1.21592 0.97127 0.97108 0.99644 1.21004 0.93475 0.98668 0.96398 0.89935 1.21880 1.00638 1.00528 0.97226 1.20208 0.81297 0.85320 0.83858 1.90649 1.36760 1.25964 1.85898 1.48130 1.50295 1.28323 1.07381 1.21740 0.93823 0.88339 1.02163 1.19225 0.93995 0.93711 0.80245 1.21397 1.04939 1.18940 1.11044 0.92722 1.24925 0.97841 0.94988 0.96310 1.69920 1.39025 1.26095 1.18385 0.86592 0.84089 0.79011 0.77915 1.20310 1.21156 1.20233 0.90386 0.92356 0.91415 0.84206 0.91628 0.92562 0.91950 0.92440 0.92467 0.91877 0.92061 0.91903 0.93375 0.92194 0.92971 0.93679 0.91075 0.92673 0.95219 0.93929 0.92712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 8.81 37.15 0.33 -1.58 16 2 C 0.07 1.02 2.03 -68.86 -0.14 0.88 16 3 H 0.06 0.88 6.46 -51.93 -0.34 0.54 16 4 N -0.66 -9.51 5.07 -100.95 -0.51 -10.02 16 5 C 0.10 1.39 1.84 -67.72 -0.12 1.27 16 6 H 0.08 1.37 7.66 -51.93 -0.40 0.98 16 7 C -0.15 -1.63 4.88 -26.73 -0.13 -1.76 16 8 C -0.11 -1.19 5.92 -26.73 -0.16 -1.35 16 9 C -0.12 -1.19 5.65 -26.73 -0.15 -1.35 16 10 C -0.12 -1.38 5.45 -26.73 -0.15 -1.53 16 11 C -0.08 -1.02 2.91 -90.62 -0.26 -1.28 16 12 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 13 C -0.15 -1.60 8.24 37.16 0.31 -1.29 16 14 C 0.51 10.87 6.87 -10.98 -0.08 10.79 16 15 O -0.52 -13.53 15.89 5.56 0.09 -13.44 16 16 N -0.61 -13.14 2.86 -182.95 -0.52 -13.66 16 17 C 0.08 1.34 8.79 59.85 0.53 1.87 16 18 C 0.25 6.63 5.16 -5.19 -0.03 6.61 16 19 C -0.52 -15.15 9.39 -34.44 -0.32 -15.47 16 20 H 0.05 1.58 7.81 -52.49 -0.41 1.17 16 21 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 22 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 23 Si 0.90 22.19 29.54 -169.99 -5.02 17.17 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 27 H 0.08 0.87 4.75 -51.93 -0.25 0.62 16 28 H 0.06 0.54 7.98 -51.93 -0.41 0.13 16 29 H 0.07 0.90 8.13 -51.93 -0.42 0.48 16 30 H 0.34 3.99 7.28 -39.29 -0.29 3.70 16 31 H 0.07 0.64 6.41 -51.93 -0.33 0.31 16 32 H 0.06 0.61 7.53 -51.93 -0.39 0.22 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.59 6.43 -51.93 -0.33 0.25 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.68 7.24 -51.93 -0.38 0.30 16 41 H 0.05 0.50 4.81 -51.93 -0.25 0.25 16 42 H 0.04 0.62 7.11 -51.93 -0.37 0.25 16 43 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 44 H 0.05 0.73 5.93 -51.93 -0.31 0.42 16 45 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 46 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 47 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 353.76 15.07 5.33 5.33 Total: -1.00 -33.15 353.76 -8.57 -41.72 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -8.19 Total: 1.71 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -0.48 Total: -2.51 kcal Atomic # 7 Polarization: -49.69 SS G_CDS: -0.30 Total: -49.98 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: 0.09 Total: -13.44 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.15 -8.57 -41.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078595206.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.441 kcal (2) G-P(sol) polarization free energy of solvation -33.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds