Wall clock time and date at job start Tue Mar 31 2020 06:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47755 * 2 1 4 4 N 1.46903 * 109.47372 * 239.99411 * 2 1 3 5 5 C 1.46890 * 111.00090 * 153.92888 * 4 2 1 6 6 H 1.09001 * 109.47600 * 33.79106 * 5 4 2 7 7 C 1.53001 * 109.47552 * 273.78559 * 5 4 2 8 8 C 1.52999 * 109.47531 * 180.02562 * 7 5 4 9 9 C 1.52994 * 109.46981 * 60.00287 * 8 7 5 10 10 C 1.53004 * 109.46992 * 299.99905 * 9 8 7 11 11 C 1.52999 * 109.47180 * 60.00217 * 10 9 8 12 12 H 1.08997 * 109.47055 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.46890 * 59.99851 * 11 10 9 14 14 C 1.50709 * 109.47083 * 119.99837 * 2 1 3 15 15 O 1.21276 * 120.00208 * 119.99747 * 14 2 1 16 16 N 1.34776 * 119.99934 * 299.99694 * 14 2 1 17 17 C 1.46507 * 119.99847 * 0.02562 * 16 14 2 18 18 C 1.46498 * 120.00292 * 179.97438 * 16 14 2 19 19 C 1.50701 * 109.46955 * 89.99720 * 18 16 14 20 20 H 1.07998 * 120.00028 * 0.02562 * 19 18 16 21 21 C 1.37878 * 119.99477 * 179.97438 * 19 18 16 22 22 N 1.31510 * 120.00577 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99466 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46920 * 60.00444 * 23 21 19 25 25 H 1.48499 * 109.47071 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47509 * 300.00115 * 23 21 19 27 27 H 1.09001 * 109.47082 * 306.92898 * 1 2 3 28 28 H 1.08996 * 109.47080 * 66.92596 * 1 2 3 29 29 H 1.08991 * 109.47395 * 186.92744 * 1 2 3 30 30 H 1.00896 * 110.99442 * 29.97645 * 4 2 1 31 31 H 1.09001 * 109.47114 * 300.00844 * 7 5 4 32 32 H 1.08998 * 109.47106 * 59.99860 * 7 5 4 33 33 H 1.08997 * 109.47153 * 300.00151 * 8 7 5 34 34 H 1.08997 * 109.47055 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.47059 * 180.02562 * 9 8 7 36 36 H 1.09005 * 109.47540 * 59.99734 * 9 8 7 37 37 H 1.09006 * 109.46840 * 180.02562 * 10 9 8 38 38 H 1.08997 * 109.47138 * 300.00133 * 10 9 8 39 39 H 1.09005 * 109.47167 * 60.00508 * 13 11 10 40 40 H 1.09002 * 109.46776 * 179.97438 * 13 11 10 41 41 H 1.08997 * 109.47369 * 299.99927 * 13 11 10 42 42 H 1.08996 * 109.47544 * 89.99925 * 17 16 14 43 43 H 1.09001 * 109.46738 * 210.00252 * 17 16 14 44 44 H 1.09003 * 109.46779 * 329.99529 * 17 16 14 45 45 H 1.08993 * 109.47297 * 210.00422 * 18 16 14 46 46 H 1.09000 * 109.46690 * 329.99964 * 18 16 14 47 47 H 0.96996 * 120.00007 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 -1.1994 5 6 3.3565 -0.2136 -1.5749 6 1 3.9175 0.0405 -0.6756 7 6 3.2236 1.0270 -2.4606 8 6 4.6161 1.5256 -2.8523 9 6 5.3536 0.4272 -3.6206 10 6 5.4865 -0.8134 -2.7350 11 6 4.0941 -1.3120 -2.3433 12 1 4.1889 -2.1960 -1.7127 13 6 3.3064 -1.6685 -3.6055 14 6 2.0323 -0.7104 1.2306 15 8 2.7295 -1.6965 1.1194 16 7 1.7067 -0.2499 2.4546 17 6 0.8640 0.9410 2.5890 18 6 2.1946 -0.9407 3.6509 19 6 3.5223 -0.3578 4.0612 20 1 3.9589 0.4470 3.4884 21 6 4.1792 -0.8514 5.1684 22 7 3.6473 -1.8311 5.8661 23 14 5.8247 -0.1284 5.6774 24 1 5.6598 1.3175 5.9730 25 1 6.3192 -0.8287 6.8899 26 1 6.8033 -0.2996 4.5738 27 1 -0.3633 0.6174 0.8215 28 1 -0.3633 0.4027 -0.9454 29 1 -0.3634 -1.0201 0.1239 30 1 1.3709 -0.5915 -1.9654 31 1 2.6627 0.7729 -3.3600 32 1 2.6978 1.8094 -1.9135 33 1 5.1773 1.7796 -1.9531 34 1 4.5213 2.4096 -3.4829 35 1 6.3457 0.7822 -3.8993 36 1 4.7923 0.1731 -4.5199 37 1 6.0124 -1.5958 -3.2822 38 1 6.0478 -0.5594 -1.8358 39 1 3.8318 -2.4511 -4.1528 40 1 2.3145 -2.0241 -3.3264 41 1 3.2116 -0.7847 -4.2364 42 1 -0.1838 0.6428 2.6225 43 1 1.1219 1.4667 3.5084 44 1 1.0273 1.5997 1.7359 45 1 1.4765 -0.8151 4.4612 46 1 2.3152 -2.0020 3.4336 47 1 4.1097 -2.1785 6.6448 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078595206.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:59 Heat of formation + Delta-G solvation = -70.577654 kcal Electronic energy + Delta-G solvation = -23860.102681 eV Core-core repulsion = 20655.208089 eV Total energy + Delta-G solvation = -3204.894592 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.12855 -39.99338 -36.61727 -36.32698 -34.73349 -32.88288 -32.18895 -29.83722 -28.77609 -27.50319 -27.02438 -25.70859 -23.62118 -23.23552 -22.52200 -19.88383 -19.48103 -18.71488 -17.87480 -17.21604 -17.08302 -16.48190 -16.13936 -15.90206 -15.41696 -15.12720 -14.62613 -14.58740 -14.35899 -14.17683 -13.87987 -13.76245 -13.57004 -13.45288 -13.24171 -13.02777 -12.85926 -12.77719 -12.60323 -12.49315 -12.33856 -12.21530 -12.15714 -12.03750 -11.78569 -11.72875 -11.30206 -11.03576 -10.93917 -10.66457 -10.45377 -9.36054 -9.19019 -8.23661 -6.39084 1.32580 1.37430 1.44715 1.95721 2.29354 2.43729 3.04885 3.20967 3.72890 3.77392 3.86345 4.04963 4.09253 4.11291 4.28623 4.32813 4.41729 4.43457 4.51191 4.54632 4.66212 4.69890 4.77394 4.81594 4.85819 4.92132 4.94067 5.01959 5.04036 5.10001 5.15829 5.20107 5.22261 5.22821 5.27145 5.41582 5.43349 5.51173 5.55437 5.68578 5.86056 6.03740 6.07012 6.62354 6.69608 6.88404 7.27775 7.61731 8.82914 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016155 B = 0.005040 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.741196 B = 5554.121401 C = 6467.476870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.082 3.918 3 H 0.078 0.922 4 N -0.673 5.673 5 C 0.103 3.897 6 H 0.029 0.971 7 C -0.139 4.139 8 C -0.116 4.116 9 C -0.113 4.113 10 C -0.117 4.117 11 C -0.078 4.078 12 H 0.034 0.966 13 C -0.136 4.136 14 C 0.495 3.505 15 O -0.582 6.582 16 N -0.614 5.614 17 C 0.078 3.922 18 C 0.262 3.738 19 C -0.542 4.542 20 H 0.049 0.951 21 C 0.008 3.992 22 N -0.928 5.928 23 Si 0.966 3.034 24 H -0.258 1.258 25 H -0.275 1.275 26 H -0.281 1.281 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.050 0.950 30 H 0.358 0.642 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.042 0.958 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.036 0.964 39 H 0.053 0.947 40 H 0.055 0.945 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.063 0.937 44 H 0.091 0.909 45 H 0.023 0.977 46 H -0.008 1.008 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.073 10.204 -20.482 23.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.031 4.031 3 H 0.096 0.904 4 N -0.307 5.307 5 C -0.007 4.007 6 H 0.048 0.952 7 C -0.178 4.178 8 C -0.154 4.154 9 C -0.150 4.150 10 C -0.155 4.155 11 C -0.097 4.097 12 H 0.052 0.948 13 C -0.193 4.193 14 C 0.283 3.717 15 O -0.461 6.461 16 N -0.347 5.347 17 C -0.064 4.064 18 C 0.140 3.860 19 C -0.581 4.581 20 H 0.067 0.933 21 C -0.191 4.191 22 N -0.568 5.568 23 Si 0.790 3.210 24 H -0.182 1.182 25 H -0.200 1.200 26 H -0.206 1.206 27 H 0.110 0.890 28 H 0.116 0.884 29 H 0.069 0.931 30 H 0.181 0.819 31 H 0.107 0.893 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.055 0.945 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.081 0.919 44 H 0.109 0.891 45 H 0.041 0.959 46 H 0.010 0.990 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.494 9.033 -20.015 22.414 hybrid contribution 0.940 0.466 0.894 1.378 sum -3.554 9.499 -19.122 21.645 Atomic orbital electron populations 1.22133 0.90070 1.03307 1.05378 1.21344 0.97881 0.95358 0.88563 0.90400 1.59885 1.04064 1.60566 1.06158 1.21434 0.89389 0.93836 0.96024 0.95210 1.22239 0.98445 0.96783 1.00345 1.21480 0.95325 0.98695 0.99927 1.21543 1.00889 0.94126 0.98465 1.21584 0.95908 0.98730 0.99243 1.20962 0.95023 0.96788 0.96969 0.94780 1.21804 0.99822 1.01734 0.95922 1.21506 0.80062 0.84794 0.85386 1.90611 1.39561 1.28984 1.86922 1.48162 1.50803 1.29636 1.06118 1.22070 0.94345 0.86593 1.03426 1.18675 0.93621 0.91527 0.82143 1.21651 1.06023 1.19058 1.11352 0.93285 1.25859 1.01787 0.95254 0.96219 1.70043 1.40729 1.27178 1.18822 0.85502 0.78802 0.79235 0.77480 1.18237 1.20033 1.20646 0.89034 0.88350 0.93063 0.81941 0.89261 0.91879 0.93874 0.89981 0.91344 0.90018 0.91254 0.94495 0.92785 0.92615 0.90552 0.90640 0.91856 0.89105 0.95937 0.98977 0.92368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.16 8.81 71.98 0.63 -2.53 16 2 C 0.08 2.41 2.03 44.17 0.09 2.50 16 3 H 0.08 2.06 6.46 -2.39 -0.02 2.04 16 4 N -0.67 -19.05 5.07 -473.31 -2.40 -21.45 16 5 C 0.10 2.89 1.84 44.92 0.08 2.97 16 6 H 0.03 1.11 7.66 -2.39 -0.02 1.09 16 7 C -0.14 -2.65 4.88 30.59 0.15 -2.50 16 8 C -0.12 -2.12 5.92 30.59 0.18 -1.94 16 9 C -0.11 -1.99 5.65 30.59 0.17 -1.82 16 10 C -0.12 -2.79 5.45 30.60 0.17 -2.63 16 11 C -0.08 -2.15 2.91 -10.79 -0.03 -2.18 16 12 H 0.03 1.23 8.14 -2.39 -0.02 1.22 16 13 C -0.14 -2.75 8.24 71.98 0.59 -2.16 16 14 C 0.49 21.93 6.87 87.66 0.60 22.53 16 15 O -0.58 -32.68 15.89 -3.02 -0.05 -32.73 16 16 N -0.61 -27.30 2.86 -851.12 -2.43 -29.73 16 17 C 0.08 2.37 8.79 127.77 1.12 3.49 16 18 C 0.26 14.84 5.16 85.63 0.44 15.28 16 19 C -0.54 -32.58 9.39 25.60 0.24 -32.34 16 20 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 21 C 0.01 0.46 5.46 84.66 0.46 0.92 16 22 N -0.93 -57.88 13.29 21.45 0.28 -57.60 16 23 Si 0.97 46.31 29.54 68.60 2.03 48.33 16 24 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 25 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 26 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 27 H 0.09 1.66 4.75 -2.39 -0.01 1.65 16 28 H 0.10 1.33 7.98 -2.39 -0.02 1.31 16 29 H 0.05 1.27 8.13 -2.39 -0.02 1.25 16 30 H 0.36 7.51 7.28 -89.70 -0.65 6.85 16 31 H 0.09 1.32 6.41 -2.39 -0.02 1.30 16 32 H 0.06 1.14 7.53 -2.39 -0.02 1.12 16 33 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.08 1.18 6.43 -2.38 -0.02 1.16 16 37 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 38 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 40 H 0.05 1.18 7.24 -2.39 -0.02 1.16 16 41 H 0.08 1.18 4.81 -2.39 -0.01 1.17 16 42 H 0.08 1.87 7.11 -2.39 -0.02 1.85 16 43 H 0.06 2.04 8.07 -2.39 -0.02 2.02 16 44 H 0.09 2.12 5.93 -2.39 -0.01 2.11 16 45 H 0.02 1.28 8.07 -2.39 -0.02 1.26 16 46 H -0.01 -0.52 7.42 -2.39 -0.02 -0.54 16 47 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -79.38 353.76 2.63 -76.75 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 0.29 Total: 16.81 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: 4.91 Total: -0.38 kcal Atomic # 7 Polarization: -104.23 SS G_CDS: -4.55 Total: -108.78 kcal Atomic # 8 Polarization: -32.68 SS G_CDS: -0.05 Total: -32.73 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.33 kcal Total: -79.38 2.63 -76.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078595206.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.170 kcal (2) G-P(sol) polarization free energy of solvation -79.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds