Wall clock time and date at job start Tue Mar 31 2020 06:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08992 * 109.47280 * 2 1 4 4 C 1.52996 * 109.46975 * 239.99465 * 2 1 3 5 5 C 1.53000 * 109.47328 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47060 * 60.00126 * 5 4 2 7 7 C 1.53006 * 109.47127 * 300.00449 * 6 5 4 8 8 H 1.09001 * 109.47002 * 299.99574 * 7 6 5 9 9 N 1.46504 * 109.46883 * 180.02562 * 7 6 5 10 10 C 1.34773 * 120.00111 * 84.99828 * 9 7 6 11 11 O 1.21277 * 120.00090 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99847 * 179.97438 * 10 9 7 13 13 N 1.46897 * 109.46872 * 180.02562 * 12 10 9 14 14 C 1.46905 * 110.99681 * 293.94898 * 13 12 10 15 15 C 1.46903 * 111.00024 * 170.00008 * 13 12 10 16 16 C 1.50696 * 109.47430 * 189.99579 * 15 13 12 17 17 H 1.08005 * 119.99745 * 359.97438 * 16 15 13 18 18 C 1.37878 * 120.00188 * 180.02562 * 16 15 13 19 19 N 1.31509 * 120.00013 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99981 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46742 * 90.00123 * 20 18 16 22 22 H 1.48499 * 109.47493 * 209.99774 * 20 18 16 23 23 H 1.48502 * 109.47430 * 330.00300 * 20 18 16 24 24 C 1.52997 * 109.47164 * 59.99836 * 7 6 5 25 25 H 1.09002 * 109.47045 * 180.02562 * 24 7 6 26 26 C 1.53002 * 109.47092 * 60.00174 * 24 7 6 27 27 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47045 * 300.00240 * 1 2 3 29 29 H 1.09000 * 109.47140 * 60.00147 * 1 2 3 30 30 H 1.09004 * 109.47368 * 60.00217 * 4 2 1 31 31 H 1.09001 * 109.47372 * 300.00372 * 4 2 1 32 32 H 1.09002 * 109.47398 * 180.02562 * 5 4 2 33 33 H 1.09001 * 109.47194 * 300.00476 * 5 4 2 34 34 H 1.08998 * 109.47533 * 59.99948 * 6 5 4 35 35 H 1.08996 * 109.47853 * 180.02562 * 6 5 4 36 36 H 0.97003 * 119.99624 * 264.99510 * 9 7 6 37 37 H 1.09003 * 109.46851 * 300.00227 * 12 10 9 38 38 H 1.08995 * 109.47380 * 59.99616 * 12 10 9 39 39 H 1.08999 * 109.46721 * 60.00232 * 14 13 12 40 40 H 1.08994 * 109.46848 * 180.02562 * 14 13 12 41 41 H 1.09002 * 109.47096 * 300.00205 * 14 13 12 42 42 H 1.09000 * 109.47001 * 309.99879 * 15 13 12 43 43 H 1.09002 * 109.46823 * 69.99451 * 15 13 12 44 44 H 0.97001 * 120.00493 * 180.02562 * 19 18 16 45 45 H 1.09002 * 109.47067 * 299.99853 * 26 24 7 46 46 H 1.09000 * 109.47312 * 59.99880 * 26 24 7 47 47 H 1.09004 * 109.46930 * 179.97438 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 3.5699 -0.7220 -1.2489 6 6 4.0794 -1.4435 0.0003 7 6 3.5694 -0.7222 1.2496 8 1 3.9331 0.3053 1.2498 9 7 4.0578 -1.4128 2.4458 10 6 5.2797 -1.1270 2.9372 11 8 5.9749 -0.2977 2.3895 12 6 5.7819 -1.8370 4.1680 13 7 7.1283 -1.3513 4.4984 14 6 8.0942 -1.7297 3.4582 15 6 7.5556 -1.8399 5.8163 16 6 8.8211 -1.1329 6.2281 17 1 9.2640 -0.3948 5.5758 18 6 9.4141 -1.4292 7.4370 19 7 8.8756 -2.3290 8.2306 20 14 10.9832 -0.5533 7.9471 21 1 10.6394 0.6796 8.7001 22 1 11.7929 -1.4506 8.8099 23 1 11.7646 -0.1926 6.7369 24 6 2.0394 -0.7216 1.2493 25 1 1.6761 -0.2074 2.1390 26 6 1.5289 -2.1640 1.2490 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6766 -0.2076 -2.1392 31 1 1.6765 -1.7490 -1.2491 32 1 3.9332 -1.2355 -2.1391 33 1 3.9337 0.3056 -1.2487 34 1 3.7157 -2.4710 0.0003 35 1 5.1694 -1.4436 0.0009 36 1 3.5016 -2.0757 2.8841 37 1 5.1092 -1.6376 5.0023 38 1 5.8183 -2.9098 3.9792 39 1 7.7904 -1.2963 2.5054 40 1 9.0827 -1.3582 3.7280 41 1 8.1262 -2.8156 3.3698 42 1 6.7733 -1.6407 6.5487 43 1 7.7394 -2.9130 5.7638 44 1 9.2926 -2.5372 9.0813 45 1 1.8922 -2.6778 0.3591 46 1 1.8919 -2.6780 2.1390 47 1 0.4388 -2.1635 1.2493 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078636347.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:19 Heat of formation + Delta-G solvation = -53.736733 kcal Electronic energy + Delta-G solvation = -23014.302718 eV Core-core repulsion = 19810.138403 eV Total energy + Delta-G solvation = -3204.164315 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.40410 -38.73183 -35.92578 -34.33948 -32.81980 -32.46318 -30.82813 -28.38436 -27.29889 -26.70707 -25.94775 -24.09970 -22.32209 -21.73712 -20.46830 -19.90061 -18.68334 -16.99107 -16.23843 -16.10275 -15.55326 -15.18337 -14.96260 -14.61288 -14.33835 -14.05522 -13.85306 -13.69096 -13.33365 -13.10653 -12.82879 -12.54809 -12.33494 -12.19378 -11.83057 -11.78675 -11.67787 -11.41046 -11.27575 -10.99800 -10.94410 -10.82475 -10.66442 -10.64400 -10.47664 -10.34106 -10.27933 -9.93479 -9.40513 -9.00379 -8.84155 -8.40591 -7.18638 -6.00400 -4.00735 3.05450 3.31186 3.35758 3.41101 3.46473 4.37074 4.43726 4.46277 4.53468 4.85260 4.90958 5.03377 5.07606 5.09017 5.14526 5.21544 5.33237 5.35956 5.38189 5.42352 5.47964 5.57067 5.64618 5.70456 5.75805 5.79792 5.85999 5.86208 5.87315 5.99740 6.05406 6.11211 6.17060 6.33614 6.36416 6.45188 6.68122 6.96381 7.26695 7.33742 7.68720 7.85726 8.09398 8.22693 8.54659 8.65644 9.07485 9.63256 11.10768 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.039763 B = 0.002978 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.997448 B = 9399.163903 C = 9663.478263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 H 0.072 0.928 4 C -0.117 4.117 5 C -0.117 4.117 6 C -0.131 4.131 7 C 0.153 3.847 8 H 0.085 0.915 9 N -0.737 5.737 10 C 0.515 3.485 11 O -0.518 6.518 12 C 0.037 3.963 13 N -0.523 5.523 14 C 0.034 3.966 15 C 0.193 3.807 16 C -0.504 4.504 17 H 0.065 0.935 18 C 0.054 3.946 19 N -0.901 5.901 20 Si 0.899 3.101 21 H -0.280 1.280 22 H -0.288 1.288 23 H -0.273 1.273 24 C -0.093 4.093 25 H 0.075 0.925 26 C -0.155 4.155 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.396 0.604 37 H 0.096 0.904 38 H 0.050 0.950 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.003 0.997 42 H 0.030 0.970 43 H -0.008 1.008 44 H 0.261 0.739 45 H 0.064 0.936 46 H 0.053 0.947 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.247 -0.335 -17.632 25.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.103 4.103 3 H 0.090 0.910 4 C -0.154 4.154 5 C -0.155 4.155 6 C -0.169 4.169 7 C 0.048 3.952 8 H 0.103 0.897 9 N -0.392 5.392 10 C 0.302 3.698 11 O -0.392 6.392 12 C -0.095 4.095 13 N -0.248 5.248 14 C -0.114 4.114 15 C 0.068 3.932 16 C -0.543 4.543 17 H 0.083 0.917 18 C -0.147 4.147 19 N -0.541 5.541 20 Si 0.727 3.273 21 H -0.206 1.206 22 H -0.214 1.214 23 H -0.198 1.198 24 C -0.112 4.112 25 H 0.094 0.906 26 C -0.212 4.212 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.230 0.770 37 H 0.114 0.886 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.022 0.978 42 H 0.048 0.952 43 H 0.010 0.990 44 H 0.070 0.930 45 H 0.083 0.917 46 H 0.072 0.928 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.687 0.703 -17.810 25.110 hybrid contribution 0.554 -0.873 0.682 1.239 sum -17.133 -0.171 -17.127 24.226 Atomic orbital electron populations 1.21880 0.95098 1.01954 1.01627 1.21089 0.95499 0.99536 0.94207 0.90980 1.21661 0.95638 1.00840 0.97254 1.21484 0.95349 1.01089 0.97558 1.21955 1.01361 0.99559 0.94065 1.20850 0.92631 0.97379 0.84346 0.89661 1.46216 1.18488 1.44433 1.30020 1.20988 0.80680 0.82677 0.85500 1.90636 1.55589 1.32837 1.60185 1.21954 0.95556 0.96633 0.95404 1.61852 0.98641 1.59637 1.04629 1.22354 0.97637 0.96250 0.95200 1.19788 0.96424 0.93600 0.83410 1.21168 1.07973 1.22069 1.03067 0.91688 1.24981 0.97881 0.95367 0.96439 1.69954 1.40301 1.32800 1.11051 0.86472 0.82965 0.79338 0.78501 1.20610 1.21354 1.19801 1.21377 0.94157 0.97032 0.98635 0.90620 1.22017 1.01167 0.95932 1.02040 0.92327 0.92674 0.92766 0.92095 0.91635 0.91912 0.91791 0.91695 0.91429 0.76972 0.88641 0.93258 0.91731 0.90805 0.97813 0.95209 0.99036 0.92962 0.91749 0.92810 0.92168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 8.84 37.16 0.33 -0.60 16 2 C -0.08 -0.62 2.50 -90.62 -0.23 -0.85 16 3 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 4 C -0.12 -0.83 4.93 -26.73 -0.13 -0.96 16 5 C -0.12 -1.00 5.92 -26.73 -0.16 -1.16 16 6 C -0.13 -1.36 5.22 -26.73 -0.14 -1.50 16 7 C 0.15 1.68 2.15 -67.93 -0.15 1.54 16 8 H 0.09 1.15 7.58 -51.93 -0.39 0.76 16 9 N -0.74 -9.01 5.00 -53.80 -0.27 -9.28 16 10 C 0.51 8.67 7.52 -10.99 -0.08 8.59 16 11 O -0.52 -10.66 13.97 5.56 0.08 -10.58 16 12 C 0.04 0.66 5.45 -4.98 -0.03 0.63 16 13 N -0.52 -12.09 4.49 -245.82 -1.10 -13.20 16 14 C 0.03 0.74 9.03 60.07 0.54 1.28 16 15 C 0.19 5.13 4.72 -4.98 -0.02 5.11 16 16 C -0.50 -14.62 8.46 -34.44 -0.29 -14.91 16 17 H 0.06 1.90 7.12 -52.48 -0.37 1.52 16 18 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 19 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 20 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 23 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 24 C -0.09 -0.77 2.41 -90.62 -0.22 -0.99 16 25 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 26 C -0.15 -1.08 7.97 37.16 0.30 -0.79 16 27 H 0.06 0.34 6.43 -51.93 -0.33 0.01 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.45 6.43 -51.93 -0.33 0.11 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.62 6.43 -51.93 -0.33 0.29 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.40 3.84 6.87 -40.82 -0.28 3.56 16 37 H 0.10 1.61 7.93 -51.93 -0.41 1.20 16 38 H 0.05 0.82 8.12 -51.93 -0.42 0.40 16 39 H 0.06 1.36 5.88 -51.93 -0.31 1.06 16 40 H 0.07 1.71 6.76 -51.93 -0.35 1.36 16 41 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 42 H 0.03 0.83 7.93 -51.93 -0.41 0.42 16 43 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 44 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 45 H 0.06 0.45 4.81 -51.93 -0.25 0.21 16 46 H 0.05 0.37 6.51 -51.93 -0.34 0.03 16 47 H 0.06 0.37 6.43 -51.93 -0.33 0.04 16 LS Contribution 353.10 15.07 5.32 5.32 Total: -1.00 -32.52 353.10 -8.87 -41.38 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -8.23 Total: -1.35 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -0.37 Total: -3.14 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: -0.64 Total: -48.76 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.08 Total: -10.58 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.52 -8.87 -41.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078636347.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.354 kcal (2) G-P(sol) polarization free energy of solvation -32.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds