Wall clock time and date at job start Tue Mar 31 2020 06:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08992 * 109.47280 * 2 1 4 4 C 1.52996 * 109.46975 * 239.99465 * 2 1 3 5 5 C 1.53000 * 109.47328 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47060 * 60.00126 * 5 4 2 7 7 C 1.53006 * 109.47127 * 300.00449 * 6 5 4 8 8 H 1.09001 * 109.47002 * 299.99574 * 7 6 5 9 9 N 1.46504 * 109.46883 * 180.02562 * 7 6 5 10 10 C 1.34773 * 120.00111 * 84.99828 * 9 7 6 11 11 O 1.21277 * 120.00090 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99847 * 179.97438 * 10 9 7 13 13 N 1.46897 * 109.46872 * 180.02562 * 12 10 9 14 14 C 1.46905 * 110.99681 * 293.94898 * 13 12 10 15 15 C 1.46903 * 111.00024 * 170.00008 * 13 12 10 16 16 C 1.50696 * 109.47430 * 189.99579 * 15 13 12 17 17 H 1.08005 * 119.99745 * 359.97438 * 16 15 13 18 18 C 1.37878 * 120.00188 * 180.02562 * 16 15 13 19 19 N 1.31509 * 120.00013 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99981 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46742 * 90.00123 * 20 18 16 22 22 H 1.48499 * 109.47493 * 209.99774 * 20 18 16 23 23 H 1.48502 * 109.47430 * 330.00300 * 20 18 16 24 24 C 1.52997 * 109.47164 * 59.99836 * 7 6 5 25 25 H 1.09002 * 109.47045 * 180.02562 * 24 7 6 26 26 C 1.53002 * 109.47092 * 60.00174 * 24 7 6 27 27 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47045 * 300.00240 * 1 2 3 29 29 H 1.09000 * 109.47140 * 60.00147 * 1 2 3 30 30 H 1.09004 * 109.47368 * 60.00217 * 4 2 1 31 31 H 1.09001 * 109.47372 * 300.00372 * 4 2 1 32 32 H 1.09002 * 109.47398 * 180.02562 * 5 4 2 33 33 H 1.09001 * 109.47194 * 300.00476 * 5 4 2 34 34 H 1.08998 * 109.47533 * 59.99948 * 6 5 4 35 35 H 1.08996 * 109.47853 * 180.02562 * 6 5 4 36 36 H 0.97003 * 119.99624 * 264.99510 * 9 7 6 37 37 H 1.09003 * 109.46851 * 300.00227 * 12 10 9 38 38 H 1.08995 * 109.47380 * 59.99616 * 12 10 9 39 39 H 1.08999 * 109.46721 * 60.00232 * 14 13 12 40 40 H 1.08994 * 109.46848 * 180.02562 * 14 13 12 41 41 H 1.09002 * 109.47096 * 300.00205 * 14 13 12 42 42 H 1.09000 * 109.47001 * 309.99879 * 15 13 12 43 43 H 1.09002 * 109.46823 * 69.99451 * 15 13 12 44 44 H 0.97001 * 120.00493 * 180.02562 * 19 18 16 45 45 H 1.09002 * 109.47067 * 299.99853 * 26 24 7 46 46 H 1.09000 * 109.47312 * 59.99880 * 26 24 7 47 47 H 1.09004 * 109.46930 * 179.97438 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 3.5699 -0.7220 -1.2489 6 6 4.0794 -1.4435 0.0003 7 6 3.5694 -0.7222 1.2496 8 1 3.9331 0.3053 1.2498 9 7 4.0578 -1.4128 2.4458 10 6 5.2797 -1.1270 2.9372 11 8 5.9749 -0.2977 2.3895 12 6 5.7819 -1.8370 4.1680 13 7 7.1283 -1.3513 4.4984 14 6 8.0942 -1.7297 3.4582 15 6 7.5556 -1.8399 5.8163 16 6 8.8211 -1.1329 6.2281 17 1 9.2640 -0.3948 5.5758 18 6 9.4141 -1.4292 7.4370 19 7 8.8756 -2.3290 8.2306 20 14 10.9832 -0.5533 7.9471 21 1 10.6394 0.6796 8.7001 22 1 11.7929 -1.4506 8.8099 23 1 11.7646 -0.1926 6.7369 24 6 2.0394 -0.7216 1.2493 25 1 1.6761 -0.2074 2.1390 26 6 1.5289 -2.1640 1.2490 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6766 -0.2076 -2.1392 31 1 1.6765 -1.7490 -1.2491 32 1 3.9332 -1.2355 -2.1391 33 1 3.9337 0.3056 -1.2487 34 1 3.7157 -2.4710 0.0003 35 1 5.1694 -1.4436 0.0009 36 1 3.5016 -2.0757 2.8841 37 1 5.1092 -1.6376 5.0023 38 1 5.8183 -2.9098 3.9792 39 1 7.7904 -1.2963 2.5054 40 1 9.0827 -1.3582 3.7280 41 1 8.1262 -2.8156 3.3698 42 1 6.7733 -1.6407 6.5487 43 1 7.7394 -2.9130 5.7638 44 1 9.2926 -2.5372 9.0813 45 1 1.8922 -2.6778 0.3591 46 1 1.8919 -2.6780 2.1390 47 1 0.4388 -2.1635 1.2493 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078636347.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:18 Heat of formation + Delta-G solvation = -75.258969 kcal Electronic energy + Delta-G solvation = -23015.235992 eV Core-core repulsion = 19810.138403 eV Total energy + Delta-G solvation = -3205.097589 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.40808 -39.89868 -37.66243 -35.45229 -34.63328 -33.51996 -31.75988 -29.90124 -28.79535 -27.94990 -26.64716 -25.96007 -23.32106 -22.75390 -21.97048 -21.18330 -19.44616 -18.64617 -17.93839 -17.23908 -16.74013 -16.50103 -16.34776 -15.82049 -15.53425 -15.40643 -15.27434 -14.83371 -14.45226 -14.27809 -13.91399 -13.62724 -13.45315 -13.30138 -13.19684 -12.82022 -12.76506 -12.67175 -12.58373 -12.49985 -12.39695 -12.23537 -12.10244 -11.97212 -11.56984 -11.45561 -11.29714 -11.11798 -10.99264 -10.63001 -10.56613 -9.96389 -9.02232 -8.21782 -6.30833 1.40568 1.42031 1.53394 1.69237 2.13171 2.41551 3.10740 3.38698 3.65684 3.73496 3.85770 3.96116 4.14627 4.20029 4.31605 4.37540 4.40858 4.41453 4.50105 4.56276 4.58932 4.67352 4.74522 4.76454 4.84975 4.98337 5.04130 5.05468 5.09762 5.14379 5.14619 5.16675 5.23823 5.26472 5.31348 5.39557 5.45080 5.50705 5.62011 5.63503 5.69824 6.01180 6.27456 6.46283 6.70413 6.83751 7.35565 7.38680 8.89221 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.039763 B = 0.002978 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.997448 B = 9399.163903 C = 9663.478263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.084 4.084 3 H 0.060 0.940 4 C -0.111 4.111 5 C -0.115 4.115 6 C -0.126 4.126 7 C 0.152 3.848 8 H 0.056 0.944 9 N -0.715 5.715 10 C 0.519 3.481 11 O -0.561 6.561 12 C 0.034 3.966 13 N -0.541 5.541 14 C 0.044 3.956 15 C 0.209 3.791 16 C -0.527 4.527 17 H 0.056 0.944 18 C 0.006 3.994 19 N -0.931 5.931 20 Si 0.967 3.033 21 H -0.273 1.273 22 H -0.278 1.278 23 H -0.269 1.269 24 C -0.086 4.086 25 H 0.073 0.927 26 C -0.153 4.153 27 H 0.067 0.933 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.051 0.949 34 H 0.079 0.921 35 H 0.036 0.964 36 H 0.411 0.589 37 H 0.107 0.893 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.053 0.947 41 H 0.013 0.987 42 H 0.013 0.987 43 H -0.028 1.028 44 H 0.266 0.734 45 H 0.067 0.933 46 H 0.056 0.944 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.670 -0.773 -18.437 26.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.103 4.103 3 H 0.079 0.921 4 C -0.148 4.148 5 C -0.153 4.153 6 C -0.164 4.164 7 C 0.047 3.953 8 H 0.075 0.925 9 N -0.369 5.369 10 C 0.306 3.694 11 O -0.439 6.439 12 C -0.097 4.097 13 N -0.266 5.266 14 C -0.104 4.104 15 C 0.083 3.917 16 C -0.566 4.566 17 H 0.074 0.926 18 C -0.193 4.193 19 N -0.571 5.571 20 Si 0.792 3.208 21 H -0.198 1.198 22 H -0.203 1.203 23 H -0.193 1.193 24 C -0.105 4.105 25 H 0.091 0.909 26 C -0.210 4.210 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.097 0.903 35 H 0.055 0.945 36 H 0.249 0.751 37 H 0.125 0.875 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.072 0.928 41 H 0.031 0.969 42 H 0.031 0.969 43 H -0.011 1.011 44 H 0.075 0.925 45 H 0.086 0.914 46 H 0.075 0.925 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -19.169 0.242 -18.633 26.734 hybrid contribution 0.923 -0.750 0.895 1.488 sum -18.246 -0.508 -17.738 25.453 Atomic orbital electron populations 1.21846 0.93712 1.02644 1.01958 1.21089 0.96559 0.98829 0.93840 0.92111 1.21636 0.94085 1.01601 0.97511 1.21476 0.96728 1.00209 0.96891 1.21895 0.99428 1.00536 0.94573 1.20964 0.94697 0.95719 0.83899 0.92543 1.46022 1.16952 1.43983 1.29980 1.20715 0.81671 0.82065 0.84967 1.90623 1.57144 1.34791 1.61371 1.22038 0.93140 0.97903 0.96663 1.61698 1.00973 1.60432 1.03489 1.22223 0.96461 0.96718 0.94998 1.19445 0.95219 0.92091 0.84965 1.21440 1.09208 1.22391 1.03530 0.92608 1.25839 1.01203 0.95971 0.96264 1.70052 1.41792 1.33812 1.11476 0.85412 0.78803 0.78344 0.78236 1.19836 1.20300 1.19328 1.21332 0.91576 0.98419 0.99159 0.90908 1.22026 1.02123 0.94533 1.02348 0.91406 0.92779 0.92100 0.90968 0.90523 0.90987 0.92985 0.90253 0.94494 0.75110 0.87470 0.91169 0.90996 0.92816 0.96854 0.96866 1.01056 0.92530 0.91416 0.92521 0.90715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 8.84 71.98 0.64 -0.79 16 2 C -0.08 -1.10 2.50 -10.80 -0.03 -1.12 16 3 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 4 C -0.11 -1.33 4.93 30.59 0.15 -1.18 16 5 C -0.11 -1.86 5.92 30.59 0.18 -1.68 16 6 C -0.13 -2.54 5.22 30.60 0.16 -2.38 16 7 C 0.15 3.26 2.15 44.99 0.10 3.36 16 8 H 0.06 1.57 7.58 -2.39 -0.02 1.56 16 9 N -0.72 -16.86 5.00 -442.52 -2.21 -19.07 16 10 C 0.52 17.44 7.52 87.66 0.66 18.10 16 11 O -0.56 -23.60 13.97 -3.02 -0.04 -23.64 16 12 C 0.03 1.22 5.45 85.56 0.47 1.68 16 13 N -0.54 -25.41 4.49 -931.65 -4.18 -29.60 16 14 C 0.04 1.96 9.03 127.69 1.15 3.12 16 15 C 0.21 11.37 4.72 85.56 0.40 11.77 16 16 C -0.53 -31.13 8.46 25.60 0.22 -30.91 16 17 H 0.06 3.33 7.12 -2.91 -0.02 3.31 16 18 C 0.01 0.32 5.46 84.66 0.46 0.78 16 19 N -0.93 -56.15 13.29 21.45 0.28 -55.86 16 20 Si 0.97 45.49 29.54 68.60 2.03 47.52 16 21 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 22 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 23 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 24 C -0.09 -1.28 2.41 -10.79 -0.03 -1.30 16 25 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 26 C -0.15 -1.70 7.97 71.98 0.57 -1.13 16 27 H 0.07 0.56 6.43 -2.39 -0.02 0.55 16 28 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.08 0.79 6.43 -2.39 -0.02 0.77 16 32 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.08 1.36 6.43 -2.39 -0.02 1.35 16 35 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.41 7.19 6.87 -92.71 -0.64 6.56 16 37 H 0.11 3.56 7.93 -2.39 -0.02 3.54 16 38 H 0.07 2.25 8.12 -2.39 -0.02 2.23 16 39 H 0.07 3.09 5.88 -2.39 -0.01 3.07 16 40 H 0.05 2.56 6.76 -2.39 -0.02 2.54 16 41 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.01 0.75 7.93 -2.39 -0.02 0.74 16 43 H -0.03 -1.62 8.12 -2.39 -0.02 -1.64 16 44 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 45 H 0.07 0.73 4.81 -2.39 -0.01 0.72 16 46 H 0.06 0.60 6.51 -2.39 -0.02 0.59 16 47 H 0.07 0.66 6.43 -2.38 -0.02 0.64 16 Total: -1.00 -70.84 353.10 1.28 -69.56 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: 0.30 Total: 12.79 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: 5.11 Total: -1.69 kcal Atomic # 7 Polarization: -98.42 SS G_CDS: -6.11 Total: -104.53 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -0.04 Total: -23.64 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -70.84 1.28 -69.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078636347.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.704 kcal (2) G-P(sol) polarization free energy of solvation -70.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds