Wall clock time and date at job start Tue Mar 31 2020 06:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47497 * 2 1 4 4 C 1.52997 * 109.47232 * 240.00225 * 2 1 3 5 5 H 1.09002 * 109.47153 * 299.99992 * 4 2 1 6 6 C 1.53002 * 109.47143 * 59.99957 * 4 2 1 7 7 C 1.53005 * 109.47452 * 179.97438 * 4 2 1 8 8 C 1.52999 * 109.47159 * 59.99536 * 7 4 2 9 9 C 1.52997 * 109.47317 * 300.00546 * 8 7 4 10 10 C 1.53000 * 109.47060 * 59.99960 * 9 8 7 11 11 H 1.09004 * 109.46724 * 180.02562 * 10 9 8 12 12 N 1.46496 * 109.47631 * 59.99933 * 10 9 8 13 13 C 1.34780 * 120.00083 * 84.99376 * 12 10 9 14 14 O 1.21283 * 119.99932 * 0.02562 * 13 12 10 15 15 C 1.50696 * 119.99866 * 180.02562 * 13 12 10 16 16 N 1.46906 * 109.46615 * 180.02562 * 15 13 12 17 17 C 1.46897 * 111.00428 * 293.95245 * 16 15 13 18 18 C 1.46906 * 110.99435 * 169.99966 * 16 15 13 19 19 C 1.50704 * 109.46923 * 190.00074 * 18 16 15 20 20 H 1.08006 * 119.99878 * 359.97438 * 19 18 16 21 21 C 1.37871 * 120.00053 * 180.02562 * 19 18 16 22 22 N 1.31520 * 120.00057 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00060 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47463 * 90.00174 * 23 21 19 25 25 H 1.48497 * 109.47190 * 210.00101 * 23 21 19 26 26 H 1.48500 * 109.47139 * 329.99979 * 23 21 19 27 27 H 1.09000 * 109.47140 * 299.99624 * 1 2 3 28 28 H 1.09001 * 109.46922 * 59.99924 * 1 2 3 29 29 H 1.09002 * 109.47045 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47067 * 59.99982 * 6 4 2 31 31 H 1.09000 * 109.47312 * 180.02562 * 6 4 2 32 32 H 1.09004 * 109.46930 * 300.00065 * 6 4 2 33 33 H 1.09000 * 109.47360 * 180.02562 * 7 4 2 34 34 H 1.09002 * 109.46935 * 300.00125 * 7 4 2 35 35 H 1.08996 * 109.46929 * 179.97438 * 8 7 4 36 36 H 1.09002 * 109.46716 * 60.00455 * 8 7 4 37 37 H 1.09002 * 109.47153 * 299.99641 * 9 8 7 38 38 H 1.09001 * 109.46832 * 179.97438 * 9 8 7 39 39 H 0.97000 * 120.00167 * 265.00280 * 12 10 9 40 40 H 1.09000 * 109.47296 * 299.99912 * 15 13 12 41 41 H 1.08997 * 109.47364 * 60.00547 * 15 13 12 42 42 H 1.09006 * 109.46750 * 60.00077 * 17 16 15 43 43 H 1.08989 * 109.47445 * 180.02562 * 17 16 15 44 44 H 1.09004 * 109.47334 * 300.00695 * 17 16 15 45 45 H 1.08997 * 109.47494 * 309.99569 * 18 16 15 46 46 H 1.08992 * 109.46967 * 70.00615 * 18 16 15 47 47 H 0.96996 * 119.99761 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 1 1.6767 -1.7489 -1.2493 6 6 1.5300 0.0001 -2.4985 7 6 3.5700 -0.7207 -1.2496 8 6 4.0806 -1.4415 -0.0004 9 6 3.5706 -0.7203 1.2489 10 6 2.0406 -0.7210 1.2492 11 1 1.6773 -0.2067 2.1390 12 7 1.5527 -2.1023 1.2495 13 6 1.4246 -2.7715 2.4123 14 8 1.7127 -2.2300 3.4586 15 6 0.9233 -4.1927 2.4125 16 7 0.8738 -4.6942 3.7924 17 6 2.2233 -4.7996 4.3630 18 6 0.1718 -5.9829 3.8592 19 6 -0.0758 -6.3460 5.3007 20 1 0.2556 -5.6855 6.0885 21 6 -0.7243 -7.5216 5.6140 22 7 -0.9400 -7.8386 6.8720 23 14 -1.2968 -8.6641 4.2515 24 1 -0.2185 -9.6342 3.9332 25 1 -2.5076 -9.3989 4.6978 26 1 -1.6195 -7.8676 3.0405 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 1.0278 -2.4984 31 1 1.8930 -0.5139 -3.3885 32 1 0.4399 0.0001 -2.4985 33 1 3.9334 -1.2341 -2.1398 34 1 3.9330 0.3072 -1.2498 35 1 5.1706 -1.4415 -0.0009 36 1 3.7176 -2.4693 -0.0002 37 1 3.9335 0.3075 1.2487 38 1 3.9340 -1.2342 2.1388 39 1 1.3220 -2.5354 0.4127 40 1 -0.0759 -4.2255 1.9783 41 1 1.5963 -4.8154 1.8232 42 1 2.6947 -3.8167 4.3651 43 1 2.1576 -5.1735 5.3847 44 1 2.8191 -5.4870 3.7625 45 1 -0.7808 -5.9054 3.3353 46 1 0.7828 -6.7541 3.3902 47 1 -1.3966 -8.6655 7.0923 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078636350.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:22 Heat of formation + Delta-G solvation = -50.337193 kcal Electronic energy + Delta-G solvation = -23344.904207 eV Core-core repulsion = 20140.887307 eV Total energy + Delta-G solvation = -3204.016900 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.50449 -38.58818 -36.02019 -34.05023 -33.24937 -32.42308 -31.18264 -28.61170 -27.52819 -26.95026 -25.74302 -23.97004 -22.12273 -21.35138 -20.83744 -19.99778 -19.06225 -17.13681 -16.59214 -16.03264 -15.50586 -15.12840 -14.79548 -14.51196 -14.40211 -14.11036 -14.03848 -13.67331 -13.50450 -13.28840 -12.62987 -12.47825 -12.29854 -12.14319 -12.04562 -12.03488 -11.82144 -11.66570 -11.60474 -11.09340 -11.06781 -10.92015 -10.75294 -10.68709 -10.45113 -10.35415 -10.15560 -9.85091 -9.39366 -9.11641 -8.87376 -8.55571 -7.34127 -6.02031 -3.99281 2.99790 3.28325 3.29514 3.36321 3.37228 4.35811 4.37107 4.42729 4.43296 4.75309 4.88747 4.92306 5.05206 5.12183 5.15586 5.21721 5.27018 5.29477 5.30268 5.40097 5.50783 5.57913 5.63745 5.66632 5.68535 5.70955 5.74605 5.78037 5.90765 5.98620 6.06528 6.10955 6.12143 6.20805 6.26703 6.34350 6.64082 6.81083 6.87908 7.05110 7.55731 7.67101 7.93185 8.05282 8.58668 8.68916 9.08784 9.58897 11.11266 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027782 B = 0.003523 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.590104 B = 7944.951870 C = 8238.544686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.092 4.092 3 H 0.081 0.919 4 C -0.088 4.088 5 H 0.068 0.932 6 C -0.149 4.149 7 C -0.114 4.114 8 C -0.118 4.118 9 C -0.131 4.131 10 C 0.153 3.847 11 H 0.087 0.913 12 N -0.731 5.731 13 C 0.515 3.485 14 O -0.516 6.516 15 C 0.033 3.967 16 N -0.512 5.512 17 C 0.032 3.968 18 C 0.162 3.838 19 C -0.507 4.507 20 H 0.083 0.917 21 C 0.067 3.933 22 N -0.900 5.900 23 Si 0.876 3.124 24 H -0.278 1.278 25 H -0.285 1.285 26 H -0.268 1.268 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.394 0.606 40 H 0.095 0.905 41 H 0.050 0.950 42 H 0.067 0.933 43 H 0.079 0.921 44 H 0.004 0.996 45 H 0.028 0.972 46 H -0.016 1.016 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.445 15.694 -21.098 27.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.111 4.111 3 H 0.099 0.901 4 C -0.107 4.107 5 H 0.087 0.913 6 C -0.206 4.206 7 C -0.151 4.151 8 C -0.156 4.156 9 C -0.169 4.169 10 C 0.048 3.952 11 H 0.105 0.895 12 N -0.386 5.386 13 C 0.302 3.698 14 O -0.390 6.390 15 C -0.099 4.099 16 N -0.236 5.236 17 C -0.116 4.116 18 C 0.036 3.964 19 C -0.545 4.545 20 H 0.101 0.899 21 C -0.134 4.134 22 N -0.539 5.539 23 Si 0.704 3.296 24 H -0.204 1.204 25 H -0.211 1.211 26 H -0.193 1.193 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.229 0.771 40 H 0.113 0.887 41 H 0.068 0.932 42 H 0.086 0.914 43 H 0.098 0.902 44 H 0.022 0.978 45 H 0.046 0.954 46 H 0.002 0.998 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.298 16.277 -19.897 26.722 hybrid contribution -0.023 -1.577 -1.583 2.235 sum 7.275 14.699 -21.480 27.026 Atomic orbital electron populations 1.21882 0.94647 1.02347 1.01808 1.21438 0.96169 0.99708 0.93799 0.90051 1.21168 0.95473 0.99576 0.94467 0.91326 1.21891 1.01290 1.00370 0.97065 1.21611 0.94861 1.00798 0.97859 1.21490 1.00060 0.99744 0.94279 1.21921 0.95580 1.00923 0.98514 1.20863 0.93266 0.82675 0.98378 0.89501 1.46144 1.68968 1.14353 1.09128 1.20850 0.77127 0.88602 0.83264 1.90656 1.48110 1.69043 1.31163 1.21996 1.01568 0.92182 0.94116 1.61689 1.18076 1.30299 1.13585 1.22398 0.88222 0.99993 1.00949 1.20244 0.92985 0.84280 0.98878 1.21033 1.37190 1.05581 0.90743 0.89947 1.24901 0.95668 0.97551 0.95278 1.69898 1.42684 1.24537 1.16812 0.86852 0.78613 0.81302 0.82878 1.20375 1.21135 1.19255 0.92480 0.92348 0.92368 0.92727 0.92820 0.92247 0.92105 0.91992 0.92188 0.91892 0.91419 0.91247 0.77076 0.88697 0.93244 0.91400 0.90226 0.97754 0.95393 0.99809 0.92671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 8.68 37.16 0.32 -0.87 16 2 C -0.09 -0.71 2.04 -90.62 -0.18 -0.90 16 3 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 4 C -0.09 -0.60 2.08 -90.62 -0.19 -0.78 16 5 H 0.07 0.48 6.51 -51.93 -0.34 0.14 16 6 C -0.15 -0.88 8.84 37.16 0.33 -0.55 16 7 C -0.11 -0.78 5.20 -26.73 -0.14 -0.92 16 8 C -0.12 -0.99 5.77 -26.73 -0.15 -1.15 16 9 C -0.13 -1.29 5.60 -26.73 -0.15 -1.44 16 10 C 0.15 1.58 2.23 -67.93 -0.15 1.43 16 11 H 0.09 1.10 7.58 -51.93 -0.39 0.71 16 12 N -0.73 -8.26 3.54 -53.81 -0.19 -8.45 16 13 C 0.52 8.20 7.52 -10.99 -0.08 8.12 16 14 O -0.52 -10.27 13.97 5.55 0.08 -10.20 16 15 C 0.03 0.56 5.45 -4.97 -0.03 0.54 16 16 N -0.51 -11.39 4.49 -245.82 -1.10 -12.49 16 17 C 0.03 0.69 9.03 60.06 0.54 1.24 16 18 C 0.16 4.00 3.79 -4.97 -0.02 3.99 16 19 C -0.51 -14.81 9.01 -34.44 -0.31 -15.12 16 20 H 0.08 2.65 7.37 -52.48 -0.39 2.27 16 21 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 22 N -0.90 -28.01 13.96 55.43 0.77 -27.24 16 23 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.39 6.43 -51.93 -0.33 0.06 16 29 H 0.06 0.49 7.45 -51.93 -0.39 0.11 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.35 6.43 -51.93 -0.33 0.01 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.58 7.60 -51.93 -0.39 0.18 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.39 3.58 6.65 -40.82 -0.27 3.30 16 40 H 0.09 1.46 7.93 -51.93 -0.41 1.05 16 41 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 42 H 0.07 1.40 5.88 -51.93 -0.31 1.10 16 43 H 0.08 1.87 6.76 -51.94 -0.35 1.52 16 44 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 45 H 0.03 0.68 6.99 -51.93 -0.36 0.32 16 46 H -0.02 -0.38 7.55 -51.93 -0.39 -0.77 16 47 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 353.86 15.07 5.33 5.33 Total: -1.00 -32.97 353.86 -8.57 -41.54 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -8.48 Total: -0.83 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: -0.31 Total: -4.53 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: -0.52 Total: -48.18 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.08 Total: -10.20 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.97 -8.57 -41.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078636350.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.795 kcal (2) G-P(sol) polarization free energy of solvation -32.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds