Wall clock time and date at job start Tue Mar 31 2020 06:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47497 * 2 1 4 4 C 1.52997 * 109.47232 * 240.00225 * 2 1 3 5 5 H 1.09002 * 109.47153 * 299.99992 * 4 2 1 6 6 C 1.53002 * 109.47143 * 59.99957 * 4 2 1 7 7 C 1.53005 * 109.47452 * 179.97438 * 4 2 1 8 8 C 1.52999 * 109.47159 * 59.99536 * 7 4 2 9 9 C 1.52997 * 109.47317 * 300.00546 * 8 7 4 10 10 C 1.53000 * 109.47060 * 59.99960 * 9 8 7 11 11 H 1.09004 * 109.46724 * 180.02562 * 10 9 8 12 12 N 1.46496 * 109.47631 * 59.99933 * 10 9 8 13 13 C 1.34780 * 120.00083 * 84.99376 * 12 10 9 14 14 O 1.21283 * 119.99932 * 0.02562 * 13 12 10 15 15 C 1.50696 * 119.99866 * 180.02562 * 13 12 10 16 16 N 1.46906 * 109.46615 * 180.02562 * 15 13 12 17 17 C 1.46897 * 111.00428 * 293.95245 * 16 15 13 18 18 C 1.46906 * 110.99435 * 169.99966 * 16 15 13 19 19 C 1.50704 * 109.46923 * 190.00074 * 18 16 15 20 20 H 1.08006 * 119.99878 * 359.97438 * 19 18 16 21 21 C 1.37871 * 120.00053 * 180.02562 * 19 18 16 22 22 N 1.31520 * 120.00057 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00060 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47463 * 90.00174 * 23 21 19 25 25 H 1.48497 * 109.47190 * 210.00101 * 23 21 19 26 26 H 1.48500 * 109.47139 * 329.99979 * 23 21 19 27 27 H 1.09000 * 109.47140 * 299.99624 * 1 2 3 28 28 H 1.09001 * 109.46922 * 59.99924 * 1 2 3 29 29 H 1.09002 * 109.47045 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47067 * 59.99982 * 6 4 2 31 31 H 1.09000 * 109.47312 * 180.02562 * 6 4 2 32 32 H 1.09004 * 109.46930 * 300.00065 * 6 4 2 33 33 H 1.09000 * 109.47360 * 180.02562 * 7 4 2 34 34 H 1.09002 * 109.46935 * 300.00125 * 7 4 2 35 35 H 1.08996 * 109.46929 * 179.97438 * 8 7 4 36 36 H 1.09002 * 109.46716 * 60.00455 * 8 7 4 37 37 H 1.09002 * 109.47153 * 299.99641 * 9 8 7 38 38 H 1.09001 * 109.46832 * 179.97438 * 9 8 7 39 39 H 0.97000 * 120.00167 * 265.00280 * 12 10 9 40 40 H 1.09000 * 109.47296 * 299.99912 * 15 13 12 41 41 H 1.08997 * 109.47364 * 60.00547 * 15 13 12 42 42 H 1.09006 * 109.46750 * 60.00077 * 17 16 15 43 43 H 1.08989 * 109.47445 * 180.02562 * 17 16 15 44 44 H 1.09004 * 109.47334 * 300.00695 * 17 16 15 45 45 H 1.08997 * 109.47494 * 309.99569 * 18 16 15 46 46 H 1.08992 * 109.46967 * 70.00615 * 18 16 15 47 47 H 0.96996 * 119.99761 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 1 1.6767 -1.7489 -1.2493 6 6 1.5300 0.0001 -2.4985 7 6 3.5700 -0.7207 -1.2496 8 6 4.0806 -1.4415 -0.0004 9 6 3.5706 -0.7203 1.2489 10 6 2.0406 -0.7210 1.2492 11 1 1.6773 -0.2067 2.1390 12 7 1.5527 -2.1023 1.2495 13 6 1.4246 -2.7715 2.4123 14 8 1.7127 -2.2300 3.4586 15 6 0.9233 -4.1927 2.4125 16 7 0.8738 -4.6942 3.7924 17 6 2.2233 -4.7996 4.3630 18 6 0.1718 -5.9829 3.8592 19 6 -0.0758 -6.3460 5.3007 20 1 0.2556 -5.6855 6.0885 21 6 -0.7243 -7.5216 5.6140 22 7 -0.9400 -7.8386 6.8720 23 14 -1.2968 -8.6641 4.2515 24 1 -0.2185 -9.6342 3.9332 25 1 -2.5076 -9.3989 4.6978 26 1 -1.6195 -7.8676 3.0405 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 1.0278 -2.4984 31 1 1.8930 -0.5139 -3.3885 32 1 0.4399 0.0001 -2.4985 33 1 3.9334 -1.2341 -2.1398 34 1 3.9330 0.3072 -1.2498 35 1 5.1706 -1.4415 -0.0009 36 1 3.7176 -2.4693 -0.0002 37 1 3.9335 0.3075 1.2487 38 1 3.9340 -1.2342 2.1388 39 1 1.3220 -2.5354 0.4127 40 1 -0.0759 -4.2255 1.9783 41 1 1.5963 -4.8154 1.8232 42 1 2.6947 -3.8167 4.3651 43 1 2.1576 -5.1735 5.3847 44 1 2.8191 -5.4870 3.7625 45 1 -0.7808 -5.9054 3.3353 46 1 0.7828 -6.7541 3.3902 47 1 -1.3966 -8.6655 7.0923 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078636350.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:21 Heat of formation + Delta-G solvation = -72.704519 kcal Electronic energy + Delta-G solvation = -23345.874127 eV Core-core repulsion = 20140.887307 eV Total energy + Delta-G solvation = -3204.986820 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.46725 -39.70692 -37.65665 -35.03003 -34.60111 -33.92586 -32.08367 -30.35057 -28.89286 -27.90621 -26.49475 -25.71600 -22.92266 -22.57862 -21.81150 -21.40341 -19.89834 -19.04986 -18.07532 -17.04844 -16.68528 -16.40113 -16.03817 -15.85414 -15.53748 -15.27726 -15.21669 -14.82626 -14.63924 -14.37942 -14.06604 -13.76081 -13.47382 -13.28606 -12.97033 -12.85355 -12.71214 -12.68275 -12.60571 -12.56415 -12.39740 -12.29022 -12.20132 -11.76276 -11.71726 -11.52353 -11.35237 -11.02686 -10.84411 -10.78385 -10.61907 -9.92503 -9.02574 -8.26745 -6.31623 1.36577 1.39805 1.50617 1.73952 2.18466 2.36661 3.05812 3.32051 3.66054 3.76401 3.79556 3.96085 4.11432 4.20854 4.29834 4.39707 4.46758 4.48984 4.53330 4.54044 4.60029 4.65597 4.66299 4.80283 4.89348 4.90077 4.94240 5.00476 5.04512 5.11575 5.12996 5.19010 5.20614 5.24547 5.31885 5.40677 5.41671 5.52215 5.56307 5.60090 5.69360 5.95008 6.26622 6.55423 6.73138 6.75487 7.31506 7.40659 8.90630 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027782 B = 0.003523 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.590104 B = 7944.951870 C = 8238.544686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.083 4.083 3 H 0.091 0.909 4 C -0.085 4.085 5 H 0.070 0.930 6 C -0.146 4.146 7 C -0.109 4.109 8 C -0.115 4.115 9 C -0.128 4.128 10 C 0.152 3.848 11 H 0.059 0.941 12 N -0.707 5.707 13 C 0.517 3.483 14 O -0.565 6.565 15 C 0.032 3.968 16 N -0.540 5.540 17 C 0.045 3.955 18 C 0.173 3.827 19 C -0.522 4.522 20 H 0.028 0.972 21 C 0.003 3.997 22 N -0.952 5.952 23 Si 0.956 3.044 24 H -0.266 1.266 25 H -0.283 1.283 26 H -0.240 1.240 27 H 0.042 0.958 28 H 0.075 0.925 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.080 0.920 38 H 0.038 0.962 39 H 0.410 0.590 40 H 0.116 0.884 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.042 0.958 44 H 0.022 0.978 45 H 0.040 0.960 46 H -0.004 1.004 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.310 15.648 -25.531 30.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.102 4.102 3 H 0.109 0.891 4 C -0.104 4.104 5 H 0.088 0.912 6 C -0.203 4.203 7 C -0.146 4.146 8 C -0.152 4.152 9 C -0.166 4.166 10 C 0.047 3.953 11 H 0.077 0.923 12 N -0.362 5.362 13 C 0.304 3.696 14 O -0.443 6.443 15 C -0.099 4.099 16 N -0.265 5.265 17 C -0.104 4.104 18 C 0.047 3.953 19 C -0.560 4.560 20 H 0.047 0.953 21 C -0.194 4.194 22 N -0.593 5.593 23 Si 0.778 3.222 24 H -0.191 1.191 25 H -0.208 1.208 26 H -0.163 1.163 27 H 0.061 0.939 28 H 0.093 0.907 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.098 0.902 38 H 0.056 0.944 39 H 0.247 0.753 40 H 0.134 0.866 41 H 0.096 0.904 42 H 0.089 0.911 43 H 0.061 0.939 44 H 0.041 0.959 45 H 0.058 0.942 46 H 0.014 0.986 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.175 16.263 -24.398 30.186 hybrid contribution 0.071 -1.444 -0.137 1.452 sum 7.246 14.819 -24.535 29.564 Atomic orbital electron populations 1.21884 0.94651 1.02117 1.01984 1.21388 0.96042 0.99941 0.92815 0.89080 1.21155 0.95412 0.99602 0.94209 0.91185 1.21862 1.01409 1.00514 0.96550 1.21584 0.94795 1.01065 0.97186 1.21465 1.00328 0.99278 0.94158 1.21873 0.95036 1.01580 0.98146 1.20945 0.93698 0.81798 0.98833 0.92284 1.45922 1.67264 1.14553 1.08435 1.20748 0.76770 0.88432 0.83677 1.90649 1.50596 1.69922 1.33111 1.22103 1.03659 0.92794 0.91386 1.61483 1.18291 1.29241 1.17451 1.22199 0.88558 1.00347 0.99249 1.20005 0.93958 0.85757 0.95622 1.21278 1.37262 1.05155 0.92311 0.95322 1.25966 0.95554 0.99519 0.98329 1.70079 1.43916 1.25520 1.19776 0.85593 0.78193 0.78703 0.79679 1.19121 1.20817 1.16323 0.93869 0.90658 0.92787 0.92330 0.92189 0.92045 0.91018 0.91345 0.91821 0.92560 0.90169 0.94358 0.75254 0.86640 0.90372 0.91088 0.93864 0.95921 0.94220 0.98644 0.92399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 8.68 71.98 0.63 -1.44 16 2 C -0.08 -1.10 2.04 -10.79 -0.02 -1.12 16 3 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 4 C -0.09 -0.88 2.08 -10.79 -0.02 -0.90 16 5 H 0.07 0.72 6.51 -2.39 -0.02 0.70 16 6 C -0.15 -1.20 8.84 71.98 0.64 -0.56 16 7 C -0.11 -1.15 5.20 30.60 0.16 -0.99 16 8 C -0.11 -1.69 5.77 30.59 0.18 -1.51 16 9 C -0.13 -2.42 5.60 30.59 0.17 -2.25 16 10 C 0.15 3.00 2.23 44.99 0.10 3.10 16 11 H 0.06 1.53 7.58 -2.39 -0.02 1.51 16 12 N -0.71 -14.95 3.54 -442.53 -1.57 -16.51 16 13 C 0.52 16.09 7.52 87.66 0.66 16.75 16 14 O -0.56 -23.07 13.97 -3.04 -0.04 -23.11 16 15 C 0.03 1.00 5.45 85.55 0.47 1.47 16 16 N -0.54 -23.89 4.49 -931.65 -4.18 -28.08 16 17 C 0.04 1.95 9.03 127.69 1.15 3.10 16 18 C 0.17 8.37 3.79 85.56 0.32 8.70 16 19 C -0.52 -31.36 9.01 25.60 0.23 -31.13 16 20 H 0.03 1.97 7.37 -2.91 -0.02 1.95 16 21 C 0.00 0.18 5.47 84.65 0.46 0.64 16 22 N -0.95 -61.12 13.96 21.45 0.30 -60.82 16 23 Si 0.96 43.68 27.47 68.60 1.88 45.57 16 24 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 25 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 26 H -0.24 -9.83 6.54 99.48 0.65 -9.18 16 27 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.07 0.80 6.43 -2.39 -0.02 0.79 16 29 H 0.05 0.79 7.45 -2.39 -0.02 0.77 16 30 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.06 0.49 6.43 -2.38 -0.02 0.48 16 33 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.06 0.90 7.60 -2.39 -0.02 0.89 16 37 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.41 6.28 6.65 -92.71 -0.62 5.67 16 40 H 0.12 3.18 7.93 -2.39 -0.02 3.16 16 41 H 0.08 2.08 8.12 -2.39 -0.02 2.06 16 42 H 0.07 3.04 5.88 -2.38 -0.01 3.02 16 43 H 0.04 2.15 6.76 -2.39 -0.02 2.13 16 44 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.04 1.83 6.99 -2.39 -0.02 1.81 16 46 H 0.00 -0.19 7.55 -2.39 -0.02 -0.21 16 47 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 Total: -1.00 -75.23 353.86 1.77 -73.46 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: 0.26 Total: 15.64 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: 5.12 Total: -6.14 kcal Atomic # 7 Polarization: -99.96 SS G_CDS: -5.45 Total: -105.41 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -0.04 Total: -23.11 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.88 Total: 45.57 kcal Total: -75.23 1.77 -73.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078636350.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.759 kcal (2) G-P(sol) polarization free energy of solvation -75.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds