Wall clock time and date at job start Tue Mar 31 2020 06:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46797 * 2 1 4 4 C 1.52999 * 109.47203 * 240.00027 * 2 1 3 5 5 C 1.53002 * 109.47179 * 299.99902 * 4 2 1 6 6 C 1.53005 * 109.46995 * 299.99723 * 5 4 2 7 7 C 1.53008 * 109.46808 * 60.00163 * 6 5 4 8 8 H 1.08999 * 109.47058 * 59.99638 * 7 6 5 9 9 N 1.46499 * 109.47014 * 179.97438 * 7 6 5 10 10 C 1.34777 * 119.99665 * 275.27733 * 9 7 6 11 11 O 1.21283 * 119.99990 * 359.71991 * 10 9 7 12 12 C 1.50698 * 119.99538 * 179.72653 * 10 9 7 13 13 N 1.46899 * 109.46987 * 179.97438 * 12 10 9 14 14 C 1.46903 * 110.99879 * 293.94909 * 13 12 10 15 15 C 1.46896 * 111.00331 * 169.99914 * 13 12 10 16 16 C 1.50701 * 109.47377 * 189.99925 * 15 13 12 17 17 H 1.07999 * 119.99940 * 359.97438 * 16 15 13 18 18 C 1.37885 * 119.99918 * 179.97438 * 16 15 13 19 19 N 1.31516 * 119.99440 * 179.97438 * 18 16 15 20 20 Si 1.86792 * 120.00140 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.47059 * 89.99927 * 20 18 16 22 22 H 1.48497 * 109.47244 * 209.99830 * 20 18 16 23 23 H 1.48502 * 109.47202 * 330.00269 * 20 18 16 24 24 C 1.52992 * 109.47344 * 120.00089 * 2 1 3 25 25 H 1.08999 * 109.47499 * 180.02562 * 24 2 1 26 26 C 1.53013 * 109.47279 * 300.00012 * 24 2 1 27 27 H 1.09000 * 109.47030 * 299.99645 * 1 2 3 28 28 H 1.08996 * 109.47260 * 60.00442 * 1 2 3 29 29 H 1.09006 * 109.46797 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47368 * 59.99898 * 4 2 1 31 31 H 1.09000 * 109.47077 * 179.97438 * 4 2 1 32 32 H 1.08999 * 109.47056 * 60.00198 * 5 4 2 33 33 H 1.09000 * 109.46999 * 179.97438 * 5 4 2 34 34 H 1.09000 * 109.47108 * 300.00306 * 6 5 4 35 35 H 1.08995 * 109.46860 * 179.97438 * 6 5 4 36 36 H 0.97001 * 119.99790 * 94.99446 * 9 7 6 37 37 H 1.09003 * 109.47112 * 299.99065 * 12 10 9 38 38 H 1.08993 * 109.47916 * 59.99687 * 12 10 9 39 39 H 1.09001 * 109.46920 * 60.00315 * 14 13 12 40 40 H 1.09001 * 109.47382 * 180.02562 * 14 13 12 41 41 H 1.09000 * 109.47175 * 300.00357 * 14 13 12 42 42 H 1.09000 * 109.46945 * 309.99895 * 15 13 12 43 43 H 1.09001 * 109.47294 * 69.99822 * 15 13 12 44 44 H 0.96999 * 119.99308 * 179.97438 * 19 18 16 45 45 H 1.08991 * 109.47189 * 179.97438 * 26 24 2 46 46 H 1.08997 * 109.46640 * 300.00523 * 26 24 2 47 47 H 1.08999 * 109.46705 * 59.99697 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5300 -2.1638 -1.2492 6 6 2.0402 -2.8850 0.0000 7 6 1.5301 -2.1637 1.2493 8 1 0.4401 -2.1637 1.2493 9 7 2.0180 -2.8546 2.4455 10 6 1.3437 -3.9148 2.9334 11 8 0.3304 -4.2936 2.3851 12 6 1.8490 -4.6293 4.1602 13 7 0.9448 -5.7399 4.4873 14 6 -0.3763 -5.2413 4.8925 15 6 1.5237 -6.6015 5.5266 16 6 0.6943 -7.8525 5.6615 17 1 -0.1761 -7.9932 5.0378 18 6 1.0467 -8.8175 6.5812 19 7 0.3225 -9.9090 6.6992 20 14 2.5525 -8.5745 7.6594 21 1 2.1582 -7.8793 8.9110 22 1 3.1417 -9.8964 7.9920 23 1 3.5548 -7.7546 6.9325 24 6 2.0400 -0.7212 1.2491 25 1 3.1300 -0.7208 1.2494 26 6 1.5300 0.0000 2.4985 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6767 -0.2074 -2.1393 31 1 3.1300 -0.7208 -1.2494 32 1 0.4401 -2.1638 -1.2493 33 1 1.8930 -2.6774 -2.1395 34 1 3.1302 -2.8849 0.0000 35 1 1.6765 -3.9125 0.0002 36 1 2.8285 -2.5516 2.8839 37 1 2.8487 -5.0189 3.9679 38 1 1.8855 -3.9324 4.9975 39 1 -0.8124 -4.6639 4.0773 40 1 -1.0257 -6.0840 5.1294 41 1 -0.2707 -4.6059 5.7719 42 1 2.5433 -6.8697 5.2499 43 1 1.5336 -6.0679 6.4770 44 1 0.5706 -10.5880 7.3459 45 1 1.8930 -0.5140 3.3884 46 1 1.8933 1.0277 2.4984 47 1 0.4400 0.0000 2.4985 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078636353.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:24 Heat of formation + Delta-G solvation = -49.455780 kcal Electronic energy + Delta-G solvation = -23214.450206 eV Core-core repulsion = 20010.471527 eV Total energy + Delta-G solvation = -3203.978679 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.43601 -38.77545 -36.07515 -34.33258 -33.01099 -32.42196 -30.70719 -28.60705 -27.64849 -27.01023 -25.84135 -24.00714 -22.31954 -21.51502 -20.53018 -20.02477 -18.73419 -16.99459 -16.56154 -16.49443 -15.43604 -15.16954 -14.78064 -14.46219 -14.27285 -14.15979 -14.07053 -13.73890 -13.41545 -13.26829 -12.76197 -12.53403 -12.45824 -12.23717 -12.06559 -11.79844 -11.72414 -11.57336 -11.42096 -11.09447 -10.95495 -10.91168 -10.69738 -10.66788 -10.52620 -10.40598 -10.16038 -9.85358 -9.39536 -9.13429 -8.86343 -8.55672 -7.34351 -6.02195 -3.99383 2.98212 3.24791 3.28698 3.36203 3.37149 4.32214 4.43108 4.43233 4.52396 4.80892 4.89169 4.95538 5.08949 5.10435 5.12088 5.17796 5.22157 5.29730 5.33853 5.44806 5.56156 5.56905 5.64972 5.66595 5.70996 5.73083 5.78268 5.83374 5.95647 5.96360 6.02166 6.10815 6.16963 6.26305 6.32702 6.34173 6.62371 6.80776 6.87604 7.04796 7.55235 7.66412 7.92887 8.04949 8.57269 8.68756 9.08683 9.58735 11.11111 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.034513 B = 0.003251 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.086980 B = 8611.584814 C = 8722.554139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.081 4.081 3 H 0.071 0.929 4 C -0.116 4.116 5 C -0.119 4.119 6 C -0.131 4.131 7 C 0.151 3.849 8 H 0.090 0.910 9 N -0.736 5.736 10 C 0.516 3.484 11 O -0.515 6.515 12 C 0.034 3.966 13 N -0.513 5.513 14 C 0.032 3.968 15 C 0.162 3.838 16 C -0.507 4.507 17 H 0.082 0.918 18 C 0.067 3.933 19 N -0.900 5.900 20 Si 0.876 3.124 21 H -0.278 1.278 22 H -0.285 1.285 23 H -0.268 1.268 24 C -0.093 4.093 25 H 0.073 0.927 26 C -0.149 4.149 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.395 0.605 37 H 0.096 0.904 38 H 0.050 0.950 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.004 0.996 42 H 0.028 0.972 43 H -0.016 1.016 44 H 0.263 0.737 45 H 0.056 0.944 46 H 0.054 0.946 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.146 23.336 -12.679 27.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.100 4.100 3 H 0.090 0.910 4 C -0.153 4.153 5 C -0.157 4.157 6 C -0.169 4.169 7 C 0.047 3.953 8 H 0.108 0.892 9 N -0.389 5.389 10 C 0.302 3.698 11 O -0.389 6.389 12 C -0.098 4.098 13 N -0.237 5.237 14 C -0.116 4.116 15 C 0.036 3.964 16 C -0.546 4.546 17 H 0.101 0.899 18 C -0.134 4.134 19 N -0.539 5.539 20 Si 0.704 3.296 21 H -0.204 1.204 22 H -0.211 1.211 23 H -0.192 1.192 24 C -0.112 4.112 25 H 0.091 0.909 26 C -0.207 4.207 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.229 0.771 37 H 0.114 0.886 38 H 0.068 0.932 39 H 0.086 0.914 40 H 0.098 0.902 41 H 0.023 0.977 42 H 0.046 0.954 43 H 0.002 0.998 44 H 0.073 0.927 45 H 0.075 0.925 46 H 0.073 0.927 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.301 22.565 -13.379 26.763 hybrid contribution 1.445 0.605 1.636 2.265 sum 6.746 23.169 -11.743 26.837 Atomic orbital electron populations 1.22038 0.95141 1.02593 1.01636 1.21071 0.96187 0.98884 0.93902 0.91047 1.21604 1.00505 0.95853 0.97377 1.21536 1.01342 0.95200 0.97601 1.21937 1.00696 1.00265 0.94031 1.20961 1.00130 0.90022 0.84219 0.89240 1.46135 1.29761 1.32811 1.30235 1.20861 0.83844 0.79358 0.85750 1.90657 1.24292 1.64074 1.59876 1.21997 0.98848 0.94565 0.94432 1.61683 1.02039 1.15600 1.44368 1.22403 0.91770 1.00017 0.97400 1.20243 0.96045 0.92778 0.87316 1.21034 1.12712 1.00445 1.20369 0.89949 1.24905 0.96542 0.95052 0.96906 1.69899 1.39199 1.08709 1.36111 0.86850 0.83950 0.77646 0.81191 1.20375 1.21138 1.19244 1.21394 1.00397 0.94007 0.95385 0.90877 1.21886 1.01807 0.99804 0.97160 0.92376 0.92803 0.91744 0.91955 0.92019 0.91429 0.91909 0.92043 0.91087 0.77137 0.88635 0.93192 0.91411 0.90207 0.97727 0.95391 0.99798 0.92671 0.92463 0.92706 0.92178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.20 8.15 37.16 0.30 -0.90 16 2 C -0.08 -0.58 2.72 -90.62 -0.25 -0.83 16 3 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 4 C -0.12 -0.82 5.45 -26.73 -0.15 -0.97 16 5 C -0.12 -1.03 5.65 -26.73 -0.15 -1.18 16 6 C -0.13 -1.37 5.49 -26.72 -0.15 -1.52 16 7 C 0.15 1.59 1.62 -67.93 -0.11 1.48 16 8 H 0.09 1.14 5.87 -51.93 -0.30 0.84 16 9 N -0.74 -8.43 4.39 -53.80 -0.24 -8.67 16 10 C 0.52 8.26 7.52 -10.99 -0.08 8.18 16 11 O -0.52 -10.30 13.98 5.55 0.08 -10.23 16 12 C 0.03 0.57 5.45 -4.98 -0.03 0.54 16 13 N -0.51 -11.40 4.49 -245.83 -1.10 -12.51 16 14 C 0.03 0.69 9.03 60.07 0.54 1.23 16 15 C 0.16 4.01 3.79 -4.98 -0.02 3.99 16 16 C -0.51 -14.81 9.01 -34.44 -0.31 -15.12 16 17 H 0.08 2.65 7.37 -52.49 -0.39 2.26 16 18 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 19 N -0.90 -28.00 13.96 55.43 0.77 -27.23 16 20 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 23 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 24 C -0.09 -0.73 2.07 -90.62 -0.19 -0.91 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 26 C -0.15 -1.16 8.68 37.16 0.32 -0.83 16 27 H 0.06 0.44 6.43 -51.93 -0.33 0.10 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.58 4.81 -51.93 -0.25 0.33 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.62 6.43 -51.93 -0.33 0.29 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.40 3.45 8.39 -40.82 -0.34 3.11 16 37 H 0.10 1.47 7.93 -51.93 -0.41 1.06 16 38 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 39 H 0.07 1.40 5.88 -51.93 -0.31 1.09 16 40 H 0.08 1.87 6.76 -51.93 -0.35 1.52 16 41 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 42 H 0.03 0.68 6.99 -51.93 -0.36 0.32 16 43 H -0.02 -0.38 7.55 -51.93 -0.39 -0.77 16 44 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 45 H 0.06 0.46 7.44 -51.93 -0.39 0.07 16 46 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.06 0.51 6.43 -51.93 -0.33 0.18 16 LS Contribution 351.26 15.07 5.29 5.29 Total: -1.00 -33.14 351.26 -8.53 -41.67 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -8.31 Total: -0.25 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -0.36 Total: -4.96 kcal Atomic # 7 Polarization: -47.84 SS G_CDS: -0.57 Total: -48.40 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.08 Total: -10.23 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.14 -8.53 -41.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078636353.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.782 kcal (2) G-P(sol) polarization free energy of solvation -33.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds