Wall clock time and date at job start Tue Mar 31 2020 06:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46797 * 2 1 4 4 C 1.52999 * 109.47203 * 240.00027 * 2 1 3 5 5 C 1.53002 * 109.47179 * 299.99902 * 4 2 1 6 6 C 1.53005 * 109.46995 * 299.99723 * 5 4 2 7 7 C 1.53008 * 109.46808 * 60.00163 * 6 5 4 8 8 H 1.08999 * 109.47058 * 59.99638 * 7 6 5 9 9 N 1.46499 * 109.47014 * 179.97438 * 7 6 5 10 10 C 1.34777 * 119.99665 * 275.27733 * 9 7 6 11 11 O 1.21283 * 119.99990 * 359.71991 * 10 9 7 12 12 C 1.50698 * 119.99538 * 179.72653 * 10 9 7 13 13 N 1.46899 * 109.46987 * 179.97438 * 12 10 9 14 14 C 1.46903 * 110.99879 * 293.94909 * 13 12 10 15 15 C 1.46896 * 111.00331 * 169.99914 * 13 12 10 16 16 C 1.50701 * 109.47377 * 189.99925 * 15 13 12 17 17 H 1.07999 * 119.99940 * 359.97438 * 16 15 13 18 18 C 1.37885 * 119.99918 * 179.97438 * 16 15 13 19 19 N 1.31516 * 119.99440 * 179.97438 * 18 16 15 20 20 Si 1.86792 * 120.00140 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.47059 * 89.99927 * 20 18 16 22 22 H 1.48497 * 109.47244 * 209.99830 * 20 18 16 23 23 H 1.48502 * 109.47202 * 330.00269 * 20 18 16 24 24 C 1.52992 * 109.47344 * 120.00089 * 2 1 3 25 25 H 1.08999 * 109.47499 * 180.02562 * 24 2 1 26 26 C 1.53013 * 109.47279 * 300.00012 * 24 2 1 27 27 H 1.09000 * 109.47030 * 299.99645 * 1 2 3 28 28 H 1.08996 * 109.47260 * 60.00442 * 1 2 3 29 29 H 1.09006 * 109.46797 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47368 * 59.99898 * 4 2 1 31 31 H 1.09000 * 109.47077 * 179.97438 * 4 2 1 32 32 H 1.08999 * 109.47056 * 60.00198 * 5 4 2 33 33 H 1.09000 * 109.46999 * 179.97438 * 5 4 2 34 34 H 1.09000 * 109.47108 * 300.00306 * 6 5 4 35 35 H 1.08995 * 109.46860 * 179.97438 * 6 5 4 36 36 H 0.97001 * 119.99790 * 94.99446 * 9 7 6 37 37 H 1.09003 * 109.47112 * 299.99065 * 12 10 9 38 38 H 1.08993 * 109.47916 * 59.99687 * 12 10 9 39 39 H 1.09001 * 109.46920 * 60.00315 * 14 13 12 40 40 H 1.09001 * 109.47382 * 180.02562 * 14 13 12 41 41 H 1.09000 * 109.47175 * 300.00357 * 14 13 12 42 42 H 1.09000 * 109.46945 * 309.99895 * 15 13 12 43 43 H 1.09001 * 109.47294 * 69.99822 * 15 13 12 44 44 H 0.96999 * 119.99308 * 179.97438 * 19 18 16 45 45 H 1.08991 * 109.47189 * 179.97438 * 26 24 2 46 46 H 1.08997 * 109.46640 * 300.00523 * 26 24 2 47 47 H 1.08999 * 109.46705 * 59.99697 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5300 -2.1638 -1.2492 6 6 2.0402 -2.8850 0.0000 7 6 1.5301 -2.1637 1.2493 8 1 0.4401 -2.1637 1.2493 9 7 2.0180 -2.8546 2.4455 10 6 1.3437 -3.9148 2.9334 11 8 0.3304 -4.2936 2.3851 12 6 1.8490 -4.6293 4.1602 13 7 0.9448 -5.7399 4.4873 14 6 -0.3763 -5.2413 4.8925 15 6 1.5237 -6.6015 5.5266 16 6 0.6943 -7.8525 5.6615 17 1 -0.1761 -7.9932 5.0378 18 6 1.0467 -8.8175 6.5812 19 7 0.3225 -9.9090 6.6992 20 14 2.5525 -8.5745 7.6594 21 1 2.1582 -7.8793 8.9110 22 1 3.1417 -9.8964 7.9920 23 1 3.5548 -7.7546 6.9325 24 6 2.0400 -0.7212 1.2491 25 1 3.1300 -0.7208 1.2494 26 6 1.5300 0.0000 2.4985 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6767 -0.2074 -2.1393 31 1 3.1300 -0.7208 -1.2494 32 1 0.4401 -2.1638 -1.2493 33 1 1.8930 -2.6774 -2.1395 34 1 3.1302 -2.8849 0.0000 35 1 1.6765 -3.9125 0.0002 36 1 2.8285 -2.5516 2.8839 37 1 2.8487 -5.0189 3.9679 38 1 1.8855 -3.9324 4.9975 39 1 -0.8124 -4.6639 4.0773 40 1 -1.0257 -6.0840 5.1294 41 1 -0.2707 -4.6059 5.7719 42 1 2.5433 -6.8697 5.2499 43 1 1.5336 -6.0679 6.4770 44 1 0.5706 -10.5880 7.3459 45 1 1.8930 -0.5140 3.3884 46 1 1.8933 1.0277 2.4984 47 1 0.4400 0.0000 2.4985 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078636353.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:24 Heat of formation + Delta-G solvation = -72.726350 kcal Electronic energy + Delta-G solvation = -23215.459293 eV Core-core repulsion = 20010.471527 eV Total energy + Delta-G solvation = -3204.987766 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.39139 -39.87743 -37.71217 -35.39210 -34.60320 -33.70026 -31.68165 -30.28348 -28.91624 -28.08916 -26.61359 -25.73698 -23.32942 -22.33605 -22.02638 -21.34687 -19.55325 -18.95131 -17.85852 -17.51913 -16.67622 -16.35113 -16.03072 -15.88071 -15.60844 -15.44126 -15.05638 -14.81972 -14.51746 -14.42790 -14.20650 -13.73639 -13.49200 -13.41147 -13.21037 -12.87877 -12.81896 -12.63480 -12.56703 -12.46385 -12.33808 -12.23336 -12.06653 -11.76553 -11.62434 -11.52748 -11.31743 -11.18461 -10.90810 -10.78482 -10.56474 -9.93021 -9.02252 -8.26954 -6.31785 1.36473 1.39764 1.50590 1.72553 2.16095 2.36566 3.05624 3.31483 3.61463 3.77900 3.86318 3.99243 4.15919 4.22300 4.30971 4.40299 4.41529 4.43346 4.48498 4.52983 4.53741 4.60012 4.71440 4.74039 4.88141 4.90058 4.94916 5.00274 5.05525 5.08289 5.14932 5.18482 5.20017 5.25001 5.29328 5.36670 5.42997 5.48289 5.52135 5.64023 5.68164 5.94963 6.26596 6.55750 6.73449 6.75616 7.31288 7.40337 8.90455 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.034513 B = 0.003251 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.086980 B = 8611.584814 C = 8722.554139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.079 4.079 3 H 0.091 0.909 4 C -0.111 4.111 5 C -0.118 4.118 6 C -0.127 4.127 7 C 0.151 3.849 8 H 0.063 0.937 9 N -0.714 5.714 10 C 0.517 3.483 11 O -0.565 6.565 12 C 0.032 3.968 13 N -0.542 5.542 14 C 0.044 3.956 15 C 0.173 3.827 16 C -0.522 4.522 17 H 0.028 0.972 18 C 0.003 3.997 19 N -0.952 5.952 20 Si 0.956 3.044 21 H -0.266 1.266 22 H -0.283 1.283 23 H -0.240 1.240 24 C -0.084 4.084 25 H 0.092 0.908 26 C -0.149 4.149 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.043 0.957 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.033 0.967 36 H 0.413 0.587 37 H 0.116 0.884 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.042 0.958 41 H 0.023 0.977 42 H 0.040 0.960 43 H -0.004 1.004 44 H 0.267 0.733 45 H 0.055 0.945 46 H 0.072 0.928 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.548 26.465 -12.332 30.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.098 4.098 3 H 0.109 0.891 4 C -0.148 4.148 5 C -0.156 4.156 6 C -0.166 4.166 7 C 0.047 3.953 8 H 0.081 0.919 9 N -0.367 5.367 10 C 0.303 3.697 11 O -0.443 6.443 12 C -0.099 4.099 13 N -0.266 5.266 14 C -0.104 4.104 15 C 0.047 3.953 16 C -0.560 4.560 17 H 0.046 0.954 18 C -0.194 4.194 19 N -0.593 5.593 20 Si 0.779 3.221 21 H -0.191 1.191 22 H -0.208 1.208 23 H -0.163 1.163 24 C -0.103 4.103 25 H 0.110 0.890 26 C -0.206 4.206 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.052 0.948 36 H 0.250 0.750 37 H 0.134 0.866 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.061 0.939 41 H 0.042 0.958 42 H 0.058 0.942 43 H 0.014 0.986 44 H 0.076 0.924 45 H 0.074 0.926 46 H 0.091 0.909 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.740 25.757 -13.053 30.169 hybrid contribution 0.284 -0.362 1.426 1.498 sum 9.024 25.394 -11.627 29.351 Atomic orbital electron populations 1.22030 0.95959 1.01369 1.02068 1.21097 0.95465 0.99775 0.93436 0.89077 1.21584 1.01148 0.94239 0.97847 1.21525 1.00659 0.96604 0.96780 1.21882 1.01331 0.98358 0.94996 1.21038 0.98807 0.91879 0.83603 0.91913 1.45924 1.29588 1.31084 1.30058 1.20783 0.83429 0.80025 0.85440 1.90651 1.26596 1.65785 1.61265 1.22103 0.98395 0.93701 0.95678 1.61473 1.03065 1.18281 1.43775 1.22205 0.91326 0.98637 0.98226 1.20003 0.95413 0.91308 0.88605 1.21280 1.11952 1.03047 1.19753 0.95356 1.25974 1.00542 0.94301 0.98574 1.70081 1.41739 1.10076 1.37398 0.85588 0.79344 0.78173 0.79032 1.19100 1.20837 1.16300 1.21371 1.01315 0.91627 0.96002 0.89016 1.21886 1.01017 1.00827 0.96867 0.92406 0.91945 0.93814 0.90864 0.90815 0.92657 0.91464 0.90664 0.94824 0.75008 0.86581 0.90188 0.91115 0.93875 0.95825 0.94230 0.98590 0.92399 0.92630 0.90938 0.93503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 8.15 71.98 0.59 -1.64 16 2 C -0.08 -0.91 2.72 -10.80 -0.03 -0.93 16 3 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 4 C -0.11 -1.27 5.45 30.59 0.17 -1.10 16 5 C -0.12 -1.94 5.65 30.60 0.17 -1.77 16 6 C -0.13 -2.59 5.49 30.60 0.17 -2.42 16 7 C 0.15 3.02 1.62 44.99 0.07 3.10 16 8 H 0.06 1.65 5.87 -2.39 -0.01 1.63 16 9 N -0.71 -15.07 4.39 -442.52 -1.94 -17.01 16 10 C 0.52 16.15 7.52 87.66 0.66 16.81 16 11 O -0.57 -23.27 13.98 -3.04 -0.04 -23.31 16 12 C 0.03 1.02 5.45 85.56 0.47 1.49 16 13 N -0.54 -23.98 4.49 -931.66 -4.18 -28.16 16 14 C 0.04 1.93 9.03 127.69 1.15 3.08 16 15 C 0.17 8.38 3.79 85.56 0.32 8.70 16 16 C -0.52 -31.40 9.01 25.60 0.23 -31.17 16 17 H 0.03 1.95 7.37 -2.91 -0.02 1.92 16 18 C 0.00 0.17 5.47 84.66 0.46 0.63 16 19 N -0.95 -61.17 13.96 21.45 0.30 -60.87 16 20 Si 0.96 43.70 27.47 68.60 1.88 45.59 16 21 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 22 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 23 H -0.24 -9.82 6.54 99.48 0.65 -9.17 16 24 C -0.08 -1.08 2.07 -10.79 -0.02 -1.11 16 25 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 26 C -0.15 -1.90 8.68 71.99 0.63 -1.28 16 27 H 0.06 0.81 6.43 -2.39 -0.02 0.79 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.04 0.80 4.81 -2.38 -0.01 0.79 16 30 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 31 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.05 1.04 6.43 -2.39 -0.02 1.03 16 33 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.41 5.84 8.39 -92.71 -0.78 5.06 16 37 H 0.12 3.19 7.93 -2.39 -0.02 3.17 16 38 H 0.08 2.10 8.12 -2.39 -0.02 2.08 16 39 H 0.07 3.03 5.88 -2.39 -0.01 3.01 16 40 H 0.04 2.15 6.76 -2.39 -0.02 2.13 16 41 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.04 1.82 6.99 -2.39 -0.02 1.81 16 43 H 0.00 -0.16 7.55 -2.39 -0.02 -0.18 16 44 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 45 H 0.05 0.73 7.44 -2.39 -0.02 0.71 16 46 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.05 0.73 6.43 -2.39 -0.02 0.71 16 Total: -1.00 -76.26 351.26 1.16 -75.10 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 0.11 Total: 16.28 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: 5.04 Total: -7.61 kcal Atomic # 7 Polarization: -100.22 SS G_CDS: -5.82 Total: -106.04 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.04 Total: -23.31 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 1.88 Total: 45.59 kcal Total: -76.26 1.16 -75.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078636353.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.377 kcal (2) G-P(sol) polarization free energy of solvation -76.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds