Wall clock time and date at job start Tue Mar 31 2020 06:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47343 * 2 1 4 4 C 1.53006 * 109.46891 * 120.00095 * 2 1 3 5 5 H 1.08996 * 109.47204 * 59.99820 * 4 2 1 6 6 N 1.46501 * 109.46649 * 299.99987 * 4 2 1 7 7 C 1.34774 * 119.99658 * 155.00477 * 6 4 2 8 8 O 1.21278 * 119.99999 * 359.97438 * 7 6 4 9 9 C 1.50708 * 120.00128 * 179.97438 * 7 6 4 10 10 N 1.46896 * 109.47273 * 179.97438 * 9 7 6 11 11 C 1.46894 * 111.00119 * 66.04776 * 10 9 7 12 12 C 1.46900 * 110.99779 * 189.99860 * 10 9 7 13 13 C 1.50699 * 109.46724 * 169.99912 * 12 10 9 14 14 H 1.07999 * 120.00803 * 0.02562 * 13 12 10 15 15 C 1.37881 * 119.99889 * 180.02562 * 13 12 10 16 16 N 1.31520 * 120.00186 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 120.00030 * 0.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 89.99863 * 17 15 13 19 19 H 1.48503 * 109.47261 * 330.00044 * 17 15 13 20 20 H 1.48500 * 109.47454 * 210.00037 * 17 15 13 21 21 C 1.52999 * 109.46891 * 179.97438 * 4 2 1 22 22 C 1.52997 * 109.47249 * 299.99583 * 21 4 2 23 23 C 1.53006 * 109.46833 * 60.00381 * 22 21 4 24 24 C 1.52997 * 109.47249 * 239.99678 * 2 1 3 25 25 H 1.08996 * 109.47211 * 300.00403 * 24 2 1 26 26 C 1.53006 * 109.46833 * 60.00381 * 24 2 1 27 27 H 1.09001 * 109.47138 * 300.00474 * 1 2 3 28 28 H 1.09001 * 109.46979 * 60.00181 * 1 2 3 29 29 H 1.08996 * 109.47343 * 179.97438 * 1 2 3 30 30 H 0.97003 * 120.00221 * 334.99572 * 6 4 2 31 31 H 1.09004 * 109.47041 * 59.99527 * 9 7 6 32 32 H 1.09000 * 109.46786 * 300.00408 * 9 7 6 33 33 H 1.08994 * 109.47361 * 183.95516 * 11 10 9 34 34 H 1.09004 * 109.47370 * 303.95695 * 11 10 9 35 35 H 1.09001 * 109.47658 * 63.95067 * 11 10 9 36 36 H 1.09004 * 109.47135 * 50.00277 * 12 10 9 37 37 H 1.08997 * 109.47656 * 289.99891 * 12 10 9 38 38 H 0.96998 * 120.00124 * 180.02562 * 16 15 13 39 39 H 1.09002 * 109.47131 * 60.00292 * 21 4 2 40 40 H 1.09001 * 109.46979 * 179.97438 * 21 4 2 41 41 H 1.08993 * 109.46976 * 179.97438 * 22 21 4 42 42 H 1.08996 * 109.47211 * 300.00403 * 22 21 4 43 43 H 1.08996 * 109.47204 * 60.00018 * 23 22 21 44 44 H 1.09001 * 109.46765 * 180.02562 * 23 22 21 45 45 H 1.09001 * 109.46765 * 180.02562 * 26 24 2 46 46 H 1.09003 * 109.47163 * 299.99508 * 26 24 2 47 47 H 1.08996 * 109.47204 * 60.00018 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6766 -1.7489 1.2493 6 7 1.5515 -0.0306 2.4454 7 6 1.4228 -0.7029 3.6064 8 8 1.7109 -1.8798 3.6607 9 6 0.9209 0.0076 4.8370 10 7 0.8709 -0.9364 5.9613 11 6 2.2201 -1.3779 6.3386 12 6 0.1684 -0.3497 7.1104 13 6 -0.0797 -1.4165 8.1455 14 1 0.2517 -2.4290 7.9678 15 6 -0.7297 -1.1000 9.3195 16 7 -0.9458 -2.0309 10.2231 17 14 -1.3035 0.6509 9.6267 18 1 -2.6849 0.8174 9.1076 19 1 -0.3959 1.5985 8.9313 20 1 -1.2860 0.9289 11.0854 21 6 3.5699 -0.7219 1.2490 22 6 4.0794 -1.4435 -0.0002 23 6 3.5695 -0.7222 -1.2495 24 6 2.0400 -0.7213 -1.2492 25 1 1.6767 -1.7489 -1.2492 26 6 1.5300 0.0000 -2.4985 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.3209 0.9106 2.4018 31 1 -0.0782 0.4002 4.6478 32 1 1.5938 0.8295 5.0818 33 1 2.1501 -2.1285 7.1257 34 1 2.7180 -1.8081 5.4696 35 1 2.7938 -0.5246 6.7004 36 1 -0.7841 0.0652 6.7808 37 1 0.7791 0.4422 7.5440 38 1 -1.4035 -1.8083 11.0489 39 1 3.9337 0.3057 1.2488 40 1 3.9333 -1.2353 2.1392 41 1 5.1694 -1.4435 -0.0006 42 1 3.7157 -2.4710 0.0000 43 1 3.9332 0.3052 -1.2497 44 1 3.9321 -1.2367 -2.1394 45 1 1.8930 -0.5141 -3.3884 46 1 0.4400 0.0000 -2.4985 47 1 1.8934 1.0276 -2.4985 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078636356.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:27 Heat of formation + Delta-G solvation = -53.654961 kcal Electronic energy + Delta-G solvation = -23017.289542 eV Core-core repulsion = 19813.128773 eV Total energy + Delta-G solvation = -3204.160769 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.27868 -38.68429 -36.08004 -34.38829 -33.30668 -32.42103 -30.95889 -28.62501 -27.51985 -26.85999 -25.74030 -23.99061 -21.90155 -21.30649 -20.48063 -20.27922 -19.57169 -17.06948 -16.56470 -16.12497 -15.32786 -14.95939 -14.89931 -14.65183 -14.41051 -14.21990 -14.06525 -13.67066 -13.55205 -13.05226 -12.76477 -12.49384 -12.38902 -12.10274 -12.05852 -11.99882 -11.84869 -11.61771 -11.28647 -11.10120 -11.08561 -10.92950 -10.72378 -10.61452 -10.52734 -10.44482 -10.29196 -9.95488 -9.38971 -9.11947 -8.89103 -8.54690 -7.33417 -6.02015 -3.99321 2.97909 3.23185 3.28990 3.36252 3.36967 4.33250 4.41749 4.43246 4.50034 4.74713 4.87091 4.92241 5.04329 5.13393 5.15926 5.20895 5.26408 5.29184 5.30174 5.38558 5.50020 5.55313 5.64337 5.66449 5.67659 5.70486 5.78034 5.80799 5.93104 5.97136 6.00144 6.10943 6.11261 6.25700 6.26854 6.33600 6.61236 6.79070 6.89380 7.04421 7.54317 7.65882 7.92629 8.04890 8.56752 8.68789 9.08851 9.58841 11.11249 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.034419 B = 0.003196 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.308248 B = 8757.601911 C = 9190.942643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.091 4.091 3 H 0.073 0.927 4 C 0.153 3.847 5 H 0.087 0.913 6 N -0.736 5.736 7 C 0.515 3.485 8 O -0.515 6.515 9 C 0.033 3.967 10 N -0.514 5.514 11 C 0.034 3.966 12 C 0.162 3.838 13 C -0.507 4.507 14 H 0.082 0.918 15 C 0.067 3.933 16 N -0.900 5.900 17 Si 0.875 3.125 18 H -0.276 1.276 19 H -0.268 1.268 20 H -0.286 1.286 21 C -0.130 4.130 22 C -0.117 4.117 23 C -0.115 4.115 24 C -0.084 4.084 25 H 0.073 0.927 26 C -0.148 4.148 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.395 0.605 31 H 0.096 0.904 32 H 0.050 0.950 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.005 0.995 36 H 0.024 0.976 37 H -0.011 1.011 38 H 0.263 0.737 39 H 0.061 0.939 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.053 0.947 46 H 0.058 0.942 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.513 8.292 -25.389 27.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.110 4.110 3 H 0.091 0.909 4 C 0.048 3.952 5 H 0.105 0.895 6 N -0.389 5.389 7 C 0.302 3.698 8 O -0.389 6.389 9 C -0.099 4.099 10 N -0.238 5.238 11 C -0.114 4.114 12 C 0.036 3.964 13 C -0.546 4.546 14 H 0.100 0.900 15 C -0.134 4.134 16 N -0.539 5.539 17 Si 0.703 3.297 18 H -0.201 1.201 19 H -0.193 1.193 20 H -0.212 1.212 21 C -0.168 4.168 22 C -0.155 4.155 23 C -0.153 4.153 24 C -0.103 4.103 25 H 0.091 0.909 26 C -0.205 4.205 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.229 0.771 31 H 0.114 0.886 32 H 0.068 0.932 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.024 0.976 36 H 0.042 0.958 37 H 0.007 0.993 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.073 0.927 46 H 0.077 0.923 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.365 6.962 -25.276 27.232 hybrid contribution -0.066 2.169 0.586 2.248 sum 7.300 9.131 -24.690 27.318 Atomic orbital electron populations 1.21889 0.94654 1.02365 1.01785 1.21409 0.96148 0.99677 0.93806 0.90883 1.20906 0.93233 0.97593 0.83480 0.89532 1.46117 1.69134 1.13833 1.09811 1.20866 0.77112 0.87614 0.84235 1.90660 1.48035 1.15785 1.84381 1.21991 1.01610 0.94622 0.91627 1.61675 1.18100 1.37064 1.06935 1.22369 0.88307 0.99382 1.01323 1.20239 0.92885 0.95028 0.88214 1.21030 1.37170 0.96862 0.99500 0.89957 1.24904 0.95676 0.96901 0.95909 1.69897 1.42594 1.32860 1.08581 0.86864 0.79564 0.85806 0.77506 1.20136 1.19333 1.21198 1.21928 0.95545 1.00827 0.98529 1.21490 1.00296 0.99693 0.94045 1.21621 0.94971 1.00786 0.97879 1.21111 0.95347 0.99905 0.93975 0.90900 1.21881 1.01298 1.00324 0.97037 0.92370 0.92338 0.92482 0.77099 0.88639 0.93175 0.90318 0.91557 0.97627 0.95829 0.99309 0.92669 0.92073 0.91295 0.91847 0.91698 0.92004 0.91953 0.92750 0.92252 0.92765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 8.68 37.16 0.32 -0.88 16 2 C -0.09 -0.72 1.83 -90.62 -0.17 -0.89 16 3 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 4 C 0.15 1.61 1.90 -67.93 -0.13 1.48 16 5 H 0.09 1.14 7.58 -51.93 -0.39 0.74 16 6 N -0.74 -8.40 4.38 -53.80 -0.24 -8.64 16 7 C 0.52 8.26 7.49 -10.98 -0.08 8.18 16 8 O -0.51 -10.33 13.99 5.56 0.08 -10.25 16 9 C 0.03 0.57 5.45 -4.97 -0.03 0.54 16 10 N -0.51 -11.44 4.49 -245.83 -1.10 -12.55 16 11 C 0.03 0.73 9.00 60.06 0.54 1.27 16 12 C 0.16 4.01 3.79 -4.98 -0.02 3.99 16 13 C -0.51 -14.83 9.07 -34.44 -0.31 -15.14 16 14 H 0.08 2.65 7.35 -52.49 -0.39 2.27 16 15 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 16 N -0.90 -28.03 13.96 55.43 0.77 -27.26 16 17 Si 0.88 21.52 27.47 -169.99 -4.67 16.85 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 21 C -0.13 -1.31 5.50 -26.73 -0.15 -1.45 16 22 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 23 C -0.12 -0.80 5.20 -26.76 -0.14 -0.94 16 24 C -0.08 -0.61 2.24 -90.65 -0.20 -0.81 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 26 C -0.15 -0.90 8.84 37.16 0.33 -0.57 16 27 H 0.06 0.49 7.45 -51.93 -0.39 0.10 16 28 H 0.06 0.40 6.43 -51.93 -0.33 0.06 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.40 3.44 8.39 -40.82 -0.34 3.10 16 31 H 0.10 1.46 7.93 -51.93 -0.41 1.05 16 32 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 33 H 0.08 1.85 6.86 -51.93 -0.36 1.49 16 34 H 0.07 1.36 5.82 -51.93 -0.30 1.06 16 35 H 0.01 0.11 8.14 -51.93 -0.42 -0.32 16 36 H 0.02 0.57 7.36 -51.93 -0.38 0.19 16 37 H -0.01 -0.26 7.18 -51.93 -0.37 -0.64 16 38 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.06 0.35 6.43 -51.93 -0.33 0.02 16 47 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 358.32 15.07 5.40 5.40 Total: -1.00 -33.26 358.32 -8.71 -41.97 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -8.66 Total: -1.05 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: -0.29 Total: -4.47 kcal Atomic # 7 Polarization: -47.88 SS G_CDS: -0.57 Total: -48.44 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.08 Total: -10.25 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.26 -8.71 -41.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078636356.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.684 kcal (2) G-P(sol) polarization free energy of solvation -33.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds