Wall clock time and date at job start Tue Mar 31 2020 06:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47343 * 2 1 4 4 C 1.53006 * 109.46891 * 120.00095 * 2 1 3 5 5 H 1.08996 * 109.47204 * 59.99820 * 4 2 1 6 6 N 1.46501 * 109.46649 * 299.99987 * 4 2 1 7 7 C 1.34774 * 119.99658 * 155.00477 * 6 4 2 8 8 O 1.21278 * 119.99999 * 359.97438 * 7 6 4 9 9 C 1.50708 * 120.00128 * 179.97438 * 7 6 4 10 10 N 1.46896 * 109.47273 * 179.97438 * 9 7 6 11 11 C 1.46894 * 111.00119 * 66.04776 * 10 9 7 12 12 C 1.46900 * 110.99779 * 189.99860 * 10 9 7 13 13 C 1.50699 * 109.46724 * 169.99912 * 12 10 9 14 14 H 1.07999 * 120.00803 * 0.02562 * 13 12 10 15 15 C 1.37881 * 119.99889 * 180.02562 * 13 12 10 16 16 N 1.31520 * 120.00186 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 120.00030 * 0.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 89.99863 * 17 15 13 19 19 H 1.48503 * 109.47261 * 330.00044 * 17 15 13 20 20 H 1.48500 * 109.47454 * 210.00037 * 17 15 13 21 21 C 1.52999 * 109.46891 * 179.97438 * 4 2 1 22 22 C 1.52997 * 109.47249 * 299.99583 * 21 4 2 23 23 C 1.53006 * 109.46833 * 60.00381 * 22 21 4 24 24 C 1.52997 * 109.47249 * 239.99678 * 2 1 3 25 25 H 1.08996 * 109.47211 * 300.00403 * 24 2 1 26 26 C 1.53006 * 109.46833 * 60.00381 * 24 2 1 27 27 H 1.09001 * 109.47138 * 300.00474 * 1 2 3 28 28 H 1.09001 * 109.46979 * 60.00181 * 1 2 3 29 29 H 1.08996 * 109.47343 * 179.97438 * 1 2 3 30 30 H 0.97003 * 120.00221 * 334.99572 * 6 4 2 31 31 H 1.09004 * 109.47041 * 59.99527 * 9 7 6 32 32 H 1.09000 * 109.46786 * 300.00408 * 9 7 6 33 33 H 1.08994 * 109.47361 * 183.95516 * 11 10 9 34 34 H 1.09004 * 109.47370 * 303.95695 * 11 10 9 35 35 H 1.09001 * 109.47658 * 63.95067 * 11 10 9 36 36 H 1.09004 * 109.47135 * 50.00277 * 12 10 9 37 37 H 1.08997 * 109.47656 * 289.99891 * 12 10 9 38 38 H 0.96998 * 120.00124 * 180.02562 * 16 15 13 39 39 H 1.09002 * 109.47131 * 60.00292 * 21 4 2 40 40 H 1.09001 * 109.46979 * 179.97438 * 21 4 2 41 41 H 1.08993 * 109.46976 * 179.97438 * 22 21 4 42 42 H 1.08996 * 109.47211 * 300.00403 * 22 21 4 43 43 H 1.08996 * 109.47204 * 60.00018 * 23 22 21 44 44 H 1.09001 * 109.46765 * 180.02562 * 23 22 21 45 45 H 1.09001 * 109.46765 * 180.02562 * 26 24 2 46 46 H 1.09003 * 109.47163 * 299.99508 * 26 24 2 47 47 H 1.08996 * 109.47204 * 60.00018 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6766 -1.7489 1.2493 6 7 1.5515 -0.0306 2.4454 7 6 1.4228 -0.7029 3.6064 8 8 1.7109 -1.8798 3.6607 9 6 0.9209 0.0076 4.8370 10 7 0.8709 -0.9364 5.9613 11 6 2.2201 -1.3779 6.3386 12 6 0.1684 -0.3497 7.1104 13 6 -0.0797 -1.4165 8.1455 14 1 0.2517 -2.4290 7.9678 15 6 -0.7297 -1.1000 9.3195 16 7 -0.9458 -2.0309 10.2231 17 14 -1.3035 0.6509 9.6267 18 1 -2.6849 0.8174 9.1076 19 1 -0.3959 1.5985 8.9313 20 1 -1.2860 0.9289 11.0854 21 6 3.5699 -0.7219 1.2490 22 6 4.0794 -1.4435 -0.0002 23 6 3.5695 -0.7222 -1.2495 24 6 2.0400 -0.7213 -1.2492 25 1 1.6767 -1.7489 -1.2492 26 6 1.5300 0.0000 -2.4985 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.3209 0.9106 2.4018 31 1 -0.0782 0.4002 4.6478 32 1 1.5938 0.8295 5.0818 33 1 2.1501 -2.1285 7.1257 34 1 2.7180 -1.8081 5.4696 35 1 2.7938 -0.5246 6.7004 36 1 -0.7841 0.0652 6.7808 37 1 0.7791 0.4422 7.5440 38 1 -1.4035 -1.8083 11.0489 39 1 3.9337 0.3057 1.2488 40 1 3.9333 -1.2353 2.1392 41 1 5.1694 -1.4435 -0.0006 42 1 3.7157 -2.4710 0.0000 43 1 3.9332 0.3052 -1.2497 44 1 3.9321 -1.2367 -2.1394 45 1 1.8930 -0.5141 -3.3884 46 1 0.4400 0.0000 -2.4985 47 1 1.8934 1.0276 -2.4985 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078636356.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:26 Heat of formation + Delta-G solvation = -76.793529 kcal Electronic energy + Delta-G solvation = -23018.292905 eV Core-core repulsion = 19813.128773 eV Total energy + Delta-G solvation = -3205.164132 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.29165 -39.74004 -37.70988 -35.43513 -34.60394 -33.98203 -31.88859 -30.33099 -28.91974 -27.82116 -26.49621 -25.72245 -23.00804 -22.08555 -21.87961 -21.41627 -20.48543 -19.03213 -17.98729 -17.21376 -16.67588 -16.34325 -15.91074 -15.68546 -15.56044 -15.44101 -15.27026 -14.91764 -14.78674 -14.45454 -13.83497 -13.71661 -13.53213 -13.43230 -12.99197 -12.86090 -12.72834 -12.66064 -12.58197 -12.46461 -12.37776 -12.26058 -11.97787 -11.87909 -11.76306 -11.53222 -11.34385 -11.26385 -11.01520 -10.77389 -10.57079 -9.94261 -9.02306 -8.26870 -6.31892 1.36777 1.39976 1.50364 1.71935 2.14281 2.36567 3.05834 3.30866 3.62446 3.75432 3.84465 3.97768 4.09629 4.19166 4.30121 4.39918 4.45538 4.46101 4.51764 4.52644 4.54018 4.60673 4.70729 4.75090 4.87047 4.88915 4.98584 5.00648 5.01027 5.09419 5.13309 5.17528 5.19809 5.25664 5.27666 5.36464 5.38667 5.51429 5.54421 5.59019 5.67280 5.94623 6.25969 6.55338 6.73092 6.75381 7.31253 7.39472 8.90491 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.034419 B = 0.003196 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.308248 B = 8757.601911 C = 9190.942643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.082 4.082 3 H 0.093 0.907 4 C 0.153 3.847 5 H 0.054 0.946 6 N -0.713 5.713 7 C 0.517 3.483 8 O -0.565 6.565 9 C 0.032 3.968 10 N -0.542 5.542 11 C 0.046 3.954 12 C 0.174 3.826 13 C -0.522 4.522 14 H 0.028 0.972 15 C 0.003 3.997 16 N -0.952 5.952 17 Si 0.957 3.043 18 H -0.262 1.262 19 H -0.243 1.243 20 H -0.284 1.284 21 C -0.125 4.125 22 C -0.116 4.116 23 C -0.110 4.110 24 C -0.084 4.084 25 H 0.059 0.941 26 C -0.144 4.144 27 H 0.056 0.944 28 H 0.075 0.925 29 H 0.039 0.961 30 H 0.414 0.586 31 H 0.118 0.882 32 H 0.080 0.920 33 H 0.041 0.959 34 H 0.071 0.929 35 H 0.022 0.978 36 H 0.039 0.961 37 H -0.002 1.002 38 H 0.267 0.733 39 H 0.077 0.923 40 H 0.037 0.963 41 H 0.071 0.929 42 H 0.050 0.950 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.059 0.941 46 H 0.059 0.941 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.452 12.290 -27.648 31.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.101 4.101 3 H 0.111 0.889 4 C 0.048 3.952 5 H 0.072 0.928 6 N -0.366 5.366 7 C 0.303 3.697 8 O -0.443 6.443 9 C -0.099 4.099 10 N -0.267 5.267 11 C -0.102 4.102 12 C 0.047 3.953 13 C -0.561 4.561 14 H 0.046 0.954 15 C -0.194 4.194 16 N -0.593 5.593 17 Si 0.779 3.221 18 H -0.187 1.187 19 H -0.166 1.166 20 H -0.209 1.209 21 C -0.164 4.164 22 C -0.154 4.154 23 C -0.147 4.147 24 C -0.103 4.103 25 H 0.077 0.923 26 C -0.201 4.201 27 H 0.075 0.925 28 H 0.094 0.906 29 H 0.058 0.942 30 H 0.251 0.749 31 H 0.136 0.864 32 H 0.098 0.902 33 H 0.060 0.940 34 H 0.089 0.911 35 H 0.040 0.960 36 H 0.057 0.943 37 H 0.016 0.984 38 H 0.076 0.924 39 H 0.096 0.904 40 H 0.056 0.944 41 H 0.090 0.910 42 H 0.069 0.931 43 H 0.092 0.908 44 H 0.090 0.910 45 H 0.078 0.922 46 H 0.078 0.922 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.315 11.002 -27.597 30.597 hybrid contribution -0.004 0.804 1.228 1.468 sum 7.311 11.806 -26.369 29.802 Atomic orbital electron populations 1.21895 0.94661 1.01511 1.02585 1.21370 0.96031 1.00247 0.92414 0.88919 1.20977 0.93673 0.96371 0.84185 0.92757 1.45898 1.67434 1.14521 1.08715 1.20793 0.76732 0.86961 0.85184 1.90654 1.50558 1.17916 1.85193 1.22100 1.03798 0.94202 0.89779 1.61463 1.18306 1.39364 1.07543 1.22174 0.88634 0.99035 1.00346 1.20004 0.93947 0.93406 0.87957 1.21279 1.37250 0.96006 1.01538 0.95375 1.25976 0.95555 1.02613 0.95239 1.70080 1.43831 1.35990 1.09408 0.85586 0.79817 0.79069 0.77651 1.18673 1.16619 1.20924 1.21870 0.94967 1.01508 0.98033 1.21484 1.00786 0.98982 0.94167 1.21593 0.94629 1.01296 0.97175 1.21108 0.95598 0.99331 0.94292 0.92278 1.21846 1.01337 1.00664 0.96296 0.92525 0.90580 0.94201 0.74931 0.86430 0.90226 0.94002 0.91079 0.95957 0.94312 0.98432 0.92393 0.90429 0.94447 0.91037 0.93114 0.90779 0.90976 0.92235 0.92181 0.91802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 8.68 71.98 0.62 -1.47 16 2 C -0.08 -1.10 1.83 -10.79 -0.02 -1.12 16 3 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 4 C 0.15 3.08 1.90 44.99 0.09 3.16 16 5 H 0.05 1.48 7.58 -2.39 -0.02 1.47 16 6 N -0.71 -15.01 4.38 -442.52 -1.94 -16.95 16 7 C 0.52 16.14 7.49 87.66 0.66 16.79 16 8 O -0.57 -23.32 13.99 -3.02 -0.04 -23.36 16 9 C 0.03 1.02 5.45 85.56 0.47 1.48 16 10 N -0.54 -24.04 4.49 -931.66 -4.18 -28.22 16 11 C 0.05 2.03 9.00 127.69 1.15 3.18 16 12 C 0.17 8.39 3.79 85.56 0.32 8.71 16 13 C -0.52 -31.45 9.07 25.60 0.23 -31.21 16 14 H 0.03 1.93 7.35 -2.91 -0.02 1.91 16 15 C 0.00 0.17 5.47 84.65 0.46 0.63 16 16 N -0.95 -61.19 13.96 21.45 0.30 -60.89 16 17 Si 0.96 43.67 27.47 68.60 1.88 45.56 16 18 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 19 H -0.24 -10.02 6.54 99.48 0.65 -9.37 16 20 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 21 C -0.13 -2.42 5.50 30.59 0.17 -2.25 16 22 C -0.12 -1.84 5.92 30.60 0.18 -1.66 16 23 C -0.11 -1.27 5.20 30.58 0.16 -1.11 16 24 C -0.08 -1.04 2.24 -10.81 -0.02 -1.06 16 25 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 26 C -0.14 -1.32 8.84 71.98 0.64 -0.68 16 27 H 0.06 0.81 7.45 -2.39 -0.02 0.79 16 28 H 0.08 0.82 6.43 -2.39 -0.02 0.80 16 29 H 0.04 0.69 8.14 -2.39 -0.02 0.68 16 30 H 0.41 5.80 8.39 -92.71 -0.78 5.02 16 31 H 0.12 3.18 7.93 -2.38 -0.02 3.16 16 32 H 0.08 2.09 8.12 -2.39 -0.02 2.07 16 33 H 0.04 2.09 6.86 -2.39 -0.02 2.07 16 34 H 0.07 3.02 5.82 -2.38 -0.01 3.01 16 35 H 0.02 0.87 8.14 -2.39 -0.02 0.86 16 36 H 0.04 1.76 7.36 -2.39 -0.02 1.74 16 37 H 0.00 -0.09 7.18 -2.39 -0.02 -0.11 16 38 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 39 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 46 H 0.06 0.55 6.43 -2.39 -0.02 0.53 16 47 H 0.06 0.48 8.14 -2.39 -0.02 0.47 16 Total: -1.00 -76.37 358.32 1.21 -75.16 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: 0.09 Total: 15.31 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: 5.10 Total: -6.60 kcal Atomic # 7 Polarization: -100.24 SS G_CDS: -5.82 Total: -106.06 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.04 Total: -23.36 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.88 Total: 45.56 kcal Total: -76.37 1.21 -75.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078636356.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.636 kcal (2) G-P(sol) polarization free energy of solvation -76.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds