Wall clock time and date at job start Tue Mar 31 2020 06:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46766 * 2 1 4 4 C 1.50699 * 109.46706 * 240.00220 * 2 1 3 5 5 O 1.21278 * 120.00172 * 232.57621 * 4 2 1 6 6 N 1.34777 * 120.00231 * 52.58220 * 4 2 1 7 7 C 1.46921 * 120.63358 * 206.65437 * 6 4 2 8 8 H 1.09001 * 109.58822 * 113.65058 * 7 6 4 9 9 C 1.53008 * 109.58471 * 353.37120 * 7 6 4 10 10 C 1.53193 * 108.77773 * 233.58398 * 7 6 4 11 11 C 1.53045 * 109.30750 * 305.36124 * 10 7 6 12 12 C 1.53034 * 109.53784 * 61.36956 * 11 10 7 13 13 C 1.46928 * 120.63306 * 26.62539 * 6 4 2 14 14 H 1.09001 * 109.59152 * 246.20782 * 13 6 4 15 15 C 1.53002 * 109.58415 * 6.62755 * 13 6 4 16 16 N 1.46894 * 109.47103 * 120.00442 * 2 1 3 17 17 C 1.46906 * 110.99509 * 190.42051 * 16 2 1 18 18 C 1.46896 * 111.00159 * 314.37065 * 16 2 1 19 19 C 1.50701 * 109.47043 * 170.00177 * 18 16 2 20 20 H 1.07993 * 120.00400 * 0.02562 * 19 18 16 21 21 C 1.37878 * 119.99812 * 180.02562 * 19 18 16 22 22 N 1.31520 * 120.00401 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99913 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47198 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.47036 * 119.99892 * 23 21 19 26 26 H 1.48494 * 109.47108 * 239.99577 * 23 21 19 27 27 H 1.09001 * 109.47593 * 71.19131 * 1 2 3 28 28 H 1.08997 * 109.47221 * 191.19479 * 1 2 3 29 29 H 1.09005 * 109.46955 * 311.19463 * 1 2 3 30 30 H 1.08993 * 109.47194 * 56.03222 * 9 7 6 31 31 H 1.09004 * 109.46620 * 296.02608 * 9 7 6 32 32 H 1.08998 * 109.46911 * 176.03463 * 9 7 6 33 33 H 1.08997 * 109.49362 * 65.31370 * 10 7 6 34 34 H 1.08996 * 109.49675 * 185.41287 * 10 7 6 35 35 H 1.09003 * 109.46310 * 301.34094 * 11 10 7 36 36 H 1.09004 * 109.45635 * 181.38627 * 11 10 7 37 37 H 1.09006 * 109.49685 * 178.68148 * 12 11 10 38 38 H 1.08997 * 109.50495 * 58.57776 * 12 11 10 39 39 H 1.09005 * 109.46708 * 47.91014 * 15 13 6 40 40 H 1.08997 * 109.47410 * 167.90113 * 15 13 6 41 41 H 1.08994 * 109.47582 * 287.90668 * 15 13 6 42 42 H 1.08999 * 109.47254 * 64.93183 * 17 16 2 43 43 H 1.09007 * 109.46741 * 184.92833 * 17 16 2 44 44 H 1.08994 * 109.47267 * 304.92429 * 17 16 2 45 45 H 1.09004 * 109.47332 * 290.00169 * 18 16 2 46 46 H 1.09004 * 109.47010 * 50.00600 * 18 16 2 47 47 H 0.96990 * 120.00222 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 8 2.8361 -1.6122 -1.1244 6 7 1.5882 -0.3434 -2.4490 7 6 1.5666 -1.3057 -3.5590 8 1 0.5348 -1.5125 -3.8433 9 6 2.2492 -2.6045 -3.1252 10 6 2.3194 -0.7026 -4.7491 11 6 1.7176 0.6629 -5.0892 12 6 1.8737 1.6034 -3.8922 13 6 1.1159 1.0264 -2.6924 14 1 0.0474 1.0118 -2.9077 15 6 1.3809 1.8876 -1.4558 16 7 2.0197 -0.6926 1.1993 17 6 3.4669 -0.5010 1.3637 18 6 1.2910 -0.2517 2.3962 19 6 1.6416 -1.1476 3.5562 20 1 2.3366 -1.9626 3.4182 21 6 1.0752 -0.9266 4.7936 22 7 0.2292 0.0662 4.9619 23 14 1.5103 -2.0367 6.2317 24 1 2.4786 -3.0698 5.7842 25 1 2.1188 -1.2256 7.3167 26 1 0.2800 -2.6966 6.7376 27 1 -0.3634 0.3313 -0.9728 28 1 -0.3633 -1.0081 0.1995 29 1 -0.3633 0.6769 0.7733 30 1 1.7633 -2.9883 -2.2282 31 1 3.3006 -2.4093 -2.9137 32 1 2.1702 -3.3411 -3.9247 33 1 3.3715 -0.5824 -4.4909 34 1 2.2288 -1.3647 -5.6102 35 1 0.6595 0.5453 -5.3232 36 1 2.2354 1.0833 -5.9513 37 1 1.4659 2.5827 -4.1433 38 1 2.9300 1.7019 -3.6420 39 1 2.4068 1.7355 -1.1203 40 1 1.2327 2.9381 -1.7060 41 1 0.6924 1.6030 -0.6603 42 1 3.6752 0.5527 1.5487 43 1 3.8183 -1.0945 2.2079 44 1 3.9809 -0.8193 0.4568 45 1 1.5691 0.7753 2.6333 46 1 0.2185 -0.3036 2.2083 47 1 -0.1690 0.2218 5.8325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078637444.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:10 Heat of formation + Delta-G solvation = 25.648380 kcal Electronic energy + Delta-G solvation = -24507.595095 eV Core-core repulsion = 21306.873178 eV Total energy + Delta-G solvation = -3200.721918 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.94739 -37.69324 -36.60794 -34.38439 -32.81360 -32.42322 -30.41794 -28.82677 -27.41993 -26.31837 -24.65700 -24.31810 -22.80948 -21.61969 -21.06509 -19.79223 -18.84080 -16.50480 -16.06605 -15.97178 -15.55368 -15.09932 -14.63928 -14.35838 -14.31033 -14.12455 -13.55727 -13.38549 -12.95794 -12.79107 -12.67990 -12.25874 -12.17737 -11.86917 -11.84961 -11.66372 -11.51476 -11.19008 -11.06033 -10.98239 -10.94741 -10.77329 -10.68723 -10.63884 -10.57713 -10.33855 -10.17156 -9.78365 -9.14833 -8.73038 -8.37175 -8.25811 -7.01722 -5.98765 -3.98311 2.94647 3.11970 3.34391 3.41684 3.48348 4.46166 4.53936 4.58518 4.67610 4.84100 4.97030 5.04604 5.11106 5.19480 5.26829 5.37210 5.41137 5.47037 5.55095 5.62308 5.65919 5.70474 5.71933 5.80539 5.84296 5.89863 5.97624 5.99778 6.12566 6.13927 6.28654 6.30959 6.42252 6.46254 6.56323 6.66390 6.88582 6.96580 7.32748 7.38072 7.67450 7.88320 8.13445 8.28971 8.57476 8.67429 9.10360 9.65495 11.12190 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031086 B = 0.004382 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.521204 B = 6388.394980 C = 6835.616642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.027 3.973 3 H 0.092 0.908 4 C 0.533 3.467 5 O -0.505 6.505 6 N -0.629 5.629 7 C 0.149 3.851 8 H 0.066 0.934 9 C -0.144 4.144 10 C -0.131 4.131 11 C -0.119 4.119 12 C -0.130 4.130 13 C 0.149 3.851 14 H 0.072 0.928 15 C -0.203 4.203 16 N -0.524 5.524 17 C 0.038 3.962 18 C 0.189 3.811 19 C -0.502 4.502 20 H 0.064 0.936 21 C 0.054 3.946 22 N -0.901 5.901 23 Si 0.896 3.104 24 H -0.272 1.272 25 H -0.286 1.286 26 H -0.284 1.284 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.044 0.956 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.104 0.896 42 H 0.003 0.997 43 H 0.071 0.929 44 H 0.060 0.940 45 H -0.011 1.011 46 H 0.039 0.961 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.623 4.200 -20.189 20.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.085 4.085 3 H 0.109 0.891 4 C 0.321 3.679 5 O -0.378 6.378 6 N -0.367 5.367 7 C 0.046 3.954 8 H 0.084 0.916 9 C -0.201 4.201 10 C -0.169 4.169 11 C -0.156 4.156 12 C -0.168 4.168 13 C 0.046 3.954 14 H 0.090 0.910 15 C -0.259 4.259 16 N -0.250 5.250 17 C -0.110 4.110 18 C 0.064 3.936 19 C -0.540 4.540 20 H 0.082 0.918 21 C -0.146 4.146 22 N -0.541 5.541 23 Si 0.724 3.276 24 H -0.196 1.196 25 H -0.212 1.212 26 H -0.211 1.211 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.063 0.937 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.123 0.877 42 H 0.022 0.978 43 H 0.089 0.911 44 H 0.079 0.921 45 H 0.006 0.994 46 H 0.057 0.943 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.878 3.262 -20.017 20.300 hybrid contribution 0.229 0.411 0.913 1.027 sum 1.107 3.673 -19.105 19.486 Atomic orbital electron populations 1.21984 0.93200 1.03755 1.01362 1.22970 0.96602 0.97949 0.90957 0.89094 1.20859 0.79809 0.83462 0.83720 1.90622 1.29907 1.31051 1.86210 1.48184 1.67634 1.11153 1.09755 1.21123 0.98775 0.89333 0.86159 0.91606 1.22187 1.03026 0.94454 1.00447 1.22008 1.00482 0.96584 0.97852 1.21510 1.01089 0.95441 0.97587 1.21982 1.01312 0.98638 0.94853 1.21026 0.97832 0.81440 0.95152 0.91000 1.23466 1.03746 0.99860 0.98848 1.61821 1.03988 1.56813 1.02360 1.22282 0.89137 0.97708 1.01878 1.19883 0.94262 0.94033 0.85429 1.21235 1.25815 1.13841 0.93156 0.91815 1.24964 0.95281 0.95586 0.98808 1.69959 1.30366 1.30128 1.23682 0.86462 0.78251 0.80652 0.82214 1.19645 1.21183 1.21067 0.92235 0.91237 0.90797 0.91403 0.90499 0.93748 0.91496 0.91243 0.91880 0.91916 0.90908 0.91516 0.91294 0.91519 0.87739 0.97839 0.91066 0.92135 0.99372 0.94296 0.93100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 6.25 37.16 0.23 -2.19 16 2 C 0.03 0.48 1.54 -68.87 -0.11 0.38 16 3 H 0.09 1.54 3.78 -56.31 -0.21 1.33 16 4 C 0.53 9.21 5.74 -10.99 -0.06 9.15 16 5 O -0.50 -10.18 10.54 5.56 0.06 -10.12 16 6 N -0.63 -8.46 2.75 -157.73 -0.43 -8.89 16 7 C 0.15 1.78 3.49 -67.60 -0.24 1.55 16 8 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 9 C -0.14 -1.98 7.65 37.16 0.28 -1.70 16 10 C -0.13 -1.26 5.37 -26.61 -0.14 -1.41 16 11 C -0.12 -0.97 5.88 -26.69 -0.16 -1.13 16 12 C -0.13 -1.15 5.35 -26.61 -0.14 -1.29 16 13 C 0.15 1.59 2.40 -67.60 -0.16 1.43 16 14 H 0.07 0.69 7.69 -51.93 -0.40 0.29 16 15 C -0.20 -2.28 6.94 37.16 0.26 -2.02 16 16 N -0.52 -11.93 4.36 -237.73 -1.04 -12.97 16 17 C 0.04 0.83 8.99 60.07 0.54 1.37 16 18 C 0.19 4.92 4.25 -4.98 -0.02 4.90 16 19 C -0.50 -14.42 8.53 -34.44 -0.29 -14.71 16 20 H 0.06 1.86 7.10 -52.49 -0.37 1.49 16 21 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 22 N -0.90 -26.73 13.29 55.43 0.74 -26.00 16 23 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 24 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 27 H 0.06 0.79 5.25 -51.93 -0.27 0.52 16 28 H 0.07 1.29 8.10 -51.93 -0.42 0.87 16 29 H 0.07 1.28 6.84 -51.93 -0.36 0.92 16 30 H 0.07 1.12 6.83 -51.93 -0.35 0.77 16 31 H 0.08 1.20 6.80 -51.93 -0.35 0.85 16 32 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.89 6.13 -51.93 -0.32 0.57 16 40 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 41 H 0.10 1.32 3.21 -51.93 -0.17 1.15 16 42 H 0.00 0.07 8.14 -51.93 -0.42 -0.36 16 43 H 0.07 1.64 6.88 -51.93 -0.36 1.28 16 44 H 0.06 1.26 5.97 -51.93 -0.31 0.95 16 45 H -0.01 -0.32 8.12 -51.93 -0.42 -0.74 16 46 H 0.04 1.04 5.78 -51.93 -0.30 0.74 16 47 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 337.80 15.07 5.09 5.09 Total: -1.00 -31.65 337.80 -8.69 -40.34 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -7.97 Total: -0.30 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -0.11 Total: -4.21 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: -0.74 Total: -47.86 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.06 Total: -10.12 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.65 -8.69 -40.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078637444.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.986 kcal (2) G-P(sol) polarization free energy of solvation -31.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds