Wall clock time and date at job start Tue Mar 31 2020 06:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46766 * 2 1 4 4 C 1.50699 * 109.46706 * 240.00220 * 2 1 3 5 5 O 1.21278 * 120.00172 * 232.57621 * 4 2 1 6 6 N 1.34777 * 120.00231 * 52.58220 * 4 2 1 7 7 C 1.46921 * 120.63358 * 206.65437 * 6 4 2 8 8 H 1.09001 * 109.58822 * 113.65058 * 7 6 4 9 9 C 1.53008 * 109.58471 * 353.37120 * 7 6 4 10 10 C 1.53193 * 108.77773 * 233.58398 * 7 6 4 11 11 C 1.53045 * 109.30750 * 305.36124 * 10 7 6 12 12 C 1.53034 * 109.53784 * 61.36956 * 11 10 7 13 13 C 1.46928 * 120.63306 * 26.62539 * 6 4 2 14 14 H 1.09001 * 109.59152 * 246.20782 * 13 6 4 15 15 C 1.53002 * 109.58415 * 6.62755 * 13 6 4 16 16 N 1.46894 * 109.47103 * 120.00442 * 2 1 3 17 17 C 1.46906 * 110.99509 * 190.42051 * 16 2 1 18 18 C 1.46896 * 111.00159 * 314.37065 * 16 2 1 19 19 C 1.50701 * 109.47043 * 170.00177 * 18 16 2 20 20 H 1.07993 * 120.00400 * 0.02562 * 19 18 16 21 21 C 1.37878 * 119.99812 * 180.02562 * 19 18 16 22 22 N 1.31520 * 120.00401 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99913 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47198 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.47036 * 119.99892 * 23 21 19 26 26 H 1.48494 * 109.47108 * 239.99577 * 23 21 19 27 27 H 1.09001 * 109.47593 * 71.19131 * 1 2 3 28 28 H 1.08997 * 109.47221 * 191.19479 * 1 2 3 29 29 H 1.09005 * 109.46955 * 311.19463 * 1 2 3 30 30 H 1.08993 * 109.47194 * 56.03222 * 9 7 6 31 31 H 1.09004 * 109.46620 * 296.02608 * 9 7 6 32 32 H 1.08998 * 109.46911 * 176.03463 * 9 7 6 33 33 H 1.08997 * 109.49362 * 65.31370 * 10 7 6 34 34 H 1.08996 * 109.49675 * 185.41287 * 10 7 6 35 35 H 1.09003 * 109.46310 * 301.34094 * 11 10 7 36 36 H 1.09004 * 109.45635 * 181.38627 * 11 10 7 37 37 H 1.09006 * 109.49685 * 178.68148 * 12 11 10 38 38 H 1.08997 * 109.50495 * 58.57776 * 12 11 10 39 39 H 1.09005 * 109.46708 * 47.91014 * 15 13 6 40 40 H 1.08997 * 109.47410 * 167.90113 * 15 13 6 41 41 H 1.08994 * 109.47582 * 287.90668 * 15 13 6 42 42 H 1.08999 * 109.47254 * 64.93183 * 17 16 2 43 43 H 1.09007 * 109.46741 * 184.92833 * 17 16 2 44 44 H 1.08994 * 109.47267 * 304.92429 * 17 16 2 45 45 H 1.09004 * 109.47332 * 290.00169 * 18 16 2 46 46 H 1.09004 * 109.47010 * 50.00600 * 18 16 2 47 47 H 0.96990 * 120.00222 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 8 2.8361 -1.6122 -1.1244 6 7 1.5882 -0.3434 -2.4490 7 6 1.5666 -1.3057 -3.5590 8 1 0.5348 -1.5125 -3.8433 9 6 2.2492 -2.6045 -3.1252 10 6 2.3194 -0.7026 -4.7491 11 6 1.7176 0.6629 -5.0892 12 6 1.8737 1.6034 -3.8922 13 6 1.1159 1.0264 -2.6924 14 1 0.0474 1.0118 -2.9077 15 6 1.3809 1.8876 -1.4558 16 7 2.0197 -0.6926 1.1993 17 6 3.4669 -0.5010 1.3637 18 6 1.2910 -0.2517 2.3962 19 6 1.6416 -1.1476 3.5562 20 1 2.3366 -1.9626 3.4182 21 6 1.0752 -0.9266 4.7936 22 7 0.2292 0.0662 4.9619 23 14 1.5103 -2.0367 6.2317 24 1 2.4786 -3.0698 5.7842 25 1 2.1188 -1.2256 7.3167 26 1 0.2800 -2.6966 6.7376 27 1 -0.3634 0.3313 -0.9728 28 1 -0.3633 -1.0081 0.1995 29 1 -0.3633 0.6769 0.7733 30 1 1.7633 -2.9883 -2.2282 31 1 3.3006 -2.4093 -2.9137 32 1 2.1702 -3.3411 -3.9247 33 1 3.3715 -0.5824 -4.4909 34 1 2.2288 -1.3647 -5.6102 35 1 0.6595 0.5453 -5.3232 36 1 2.2354 1.0833 -5.9513 37 1 1.4659 2.5827 -4.1433 38 1 2.9300 1.7019 -3.6420 39 1 2.4068 1.7355 -1.1203 40 1 1.2327 2.9381 -1.7060 41 1 0.6924 1.6030 -0.6603 42 1 3.6752 0.5527 1.5487 43 1 3.8183 -1.0945 2.2079 44 1 3.9809 -0.8193 0.4568 45 1 1.5691 0.7753 2.6333 46 1 0.2185 -0.3036 2.2083 47 1 -0.1690 0.2218 5.8325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078637444.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:09 Heat of formation + Delta-G solvation = 5.265818 kcal Electronic energy + Delta-G solvation = -24508.478950 eV Core-core repulsion = 21306.873178 eV Total energy + Delta-G solvation = -3201.605772 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.14615 -38.96316 -38.02384 -35.72140 -34.44495 -33.77178 -31.80438 -29.87324 -29.42981 -27.33026 -26.15982 -25.95810 -24.25550 -22.55518 -22.17678 -21.24187 -20.04537 -18.55381 -17.32940 -17.17660 -16.83052 -16.59875 -16.37172 -15.58100 -15.51335 -15.15172 -14.93588 -14.61402 -14.45216 -14.09868 -13.90302 -13.78980 -13.49987 -13.27237 -13.10155 -12.90951 -12.78771 -12.75416 -12.67703 -12.48404 -12.32296 -12.22428 -12.00644 -11.88395 -11.69683 -11.58024 -11.43950 -11.30156 -11.24760 -10.57725 -10.10051 -9.38210 -8.79861 -8.19442 -6.27758 1.39043 1.39866 1.53631 1.60935 2.01371 2.41222 3.12397 3.32092 3.57913 3.79406 3.88149 3.93238 4.01864 4.13117 4.18391 4.27790 4.30483 4.44268 4.48128 4.58573 4.62507 4.66207 4.70920 4.76437 4.84554 4.87148 4.90290 5.02063 5.09116 5.09865 5.13322 5.16858 5.19690 5.22200 5.25865 5.30652 5.33968 5.39969 5.53418 5.66225 5.85136 6.06451 6.35561 6.46670 6.70767 6.87420 7.32709 7.41083 8.90962 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031086 B = 0.004382 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.521204 B = 6388.394980 C = 6835.616642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.022 3.978 3 H 0.109 0.891 4 C 0.532 3.468 5 O -0.544 6.544 6 N -0.622 5.622 7 C 0.143 3.857 8 H 0.086 0.914 9 C -0.136 4.136 10 C -0.125 4.125 11 C -0.115 4.115 12 C -0.125 4.125 13 C 0.142 3.858 14 H 0.095 0.905 15 C -0.203 4.203 16 N -0.542 5.542 17 C 0.049 3.951 18 C 0.207 3.793 19 C -0.526 4.526 20 H 0.051 0.949 21 C 0.007 3.993 22 N -0.929 5.929 23 Si 0.963 3.037 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.276 1.276 27 H 0.097 0.903 28 H 0.044 0.956 29 H 0.062 0.938 30 H 0.032 0.968 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.048 0.952 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.099 0.901 38 H 0.051 0.949 39 H 0.048 0.952 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.009 0.991 43 H 0.050 0.950 44 H 0.068 0.932 45 H -0.035 1.035 46 H 0.028 0.972 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.161 5.011 -22.295 22.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.089 4.089 3 H 0.125 0.875 4 C 0.321 3.679 5 O -0.420 6.420 6 N -0.359 5.359 7 C 0.041 3.959 8 H 0.104 0.896 9 C -0.194 4.194 10 C -0.163 4.163 11 C -0.152 4.152 12 C -0.163 4.163 13 C 0.040 3.960 14 H 0.113 0.887 15 C -0.259 4.259 16 N -0.268 5.268 17 C -0.100 4.100 18 C 0.081 3.919 19 C -0.564 4.564 20 H 0.069 0.931 21 C -0.191 4.191 22 N -0.569 5.569 23 Si 0.789 3.211 24 H -0.196 1.196 25 H -0.201 1.201 26 H -0.201 1.201 27 H 0.115 0.885 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.108 0.892 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.117 0.883 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.114 0.886 41 H 0.106 0.894 42 H 0.028 0.972 43 H 0.069 0.931 44 H 0.086 0.914 45 H -0.017 1.017 46 H 0.046 0.954 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.078 4.101 -22.171 22.547 hybrid contribution 0.460 0.192 1.481 1.563 sum 0.539 4.293 -20.690 21.138 Atomic orbital electron populations 1.21902 0.92050 1.02032 1.03090 1.23229 0.97527 0.98486 0.89612 0.87473 1.20649 0.79759 0.82819 0.84677 1.90617 1.31783 1.32735 1.86897 1.48245 1.66294 1.12646 1.08748 1.21349 1.00017 0.88198 0.86298 0.89596 1.22035 1.01236 0.96307 0.99775 1.21961 0.99085 0.98096 0.97188 1.21519 1.02111 0.93960 0.97644 1.21973 1.00249 1.00017 0.94095 1.21359 0.99396 0.79571 0.95708 0.88708 1.23352 1.01896 1.01928 0.98705 1.61689 1.04173 1.58088 1.02803 1.22142 0.88865 0.97614 1.01336 1.19522 0.93810 0.92191 0.86329 1.21496 1.26068 1.14143 0.94710 0.93058 1.25778 0.94967 0.96949 1.01389 1.70052 1.30931 1.31326 1.24633 0.85423 0.78207 0.78753 0.78766 1.19597 1.20124 1.20106 0.88471 0.93712 0.91903 0.94877 0.92958 0.91229 0.93288 0.89219 0.90320 0.90280 0.88295 0.92974 0.93337 0.88607 0.89364 0.97239 0.93116 0.91361 1.01748 0.95426 0.92633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.47 6.25 71.98 0.45 -4.02 16 2 C 0.02 0.82 1.54 44.17 0.07 0.89 16 3 H 0.11 3.68 3.78 -6.50 -0.02 3.65 16 4 C 0.53 18.62 5.74 87.66 0.50 19.13 16 5 O -0.54 -22.78 10.54 -3.02 -0.03 -22.82 16 6 N -0.62 -15.90 2.75 -771.32 -2.12 -18.02 16 7 C 0.14 3.16 3.49 44.98 0.16 3.31 16 8 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 9 C -0.14 -3.74 7.65 71.98 0.55 -3.19 16 10 C -0.12 -2.06 5.37 30.67 0.16 -1.89 16 11 C -0.11 -1.39 5.88 30.62 0.18 -1.21 16 12 C -0.13 -1.76 5.35 30.67 0.16 -1.60 16 13 C 0.14 2.61 2.40 44.97 0.11 2.71 16 14 H 0.10 1.40 7.69 -2.39 -0.02 1.38 16 15 C -0.20 -4.16 6.94 71.98 0.50 -3.66 16 16 N -0.54 -25.70 4.36 -906.04 -3.95 -29.65 16 17 C 0.05 2.21 8.99 127.69 1.15 3.36 16 18 C 0.21 11.26 4.25 85.56 0.36 11.62 16 19 C -0.53 -31.19 8.53 25.60 0.22 -30.97 16 20 H 0.05 3.11 7.10 -2.91 -0.02 3.08 16 21 C 0.01 0.43 5.46 84.65 0.46 0.89 16 22 N -0.93 -55.81 13.29 21.45 0.28 -55.53 16 23 Si 0.96 45.78 29.54 68.60 2.03 47.80 16 24 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 25 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 26 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 27 H 0.10 2.43 5.25 -2.39 -0.01 2.42 16 28 H 0.04 1.70 8.10 -2.39 -0.02 1.68 16 29 H 0.06 2.22 6.84 -2.38 -0.02 2.20 16 30 H 0.03 1.12 6.83 -2.39 -0.02 1.10 16 31 H 0.05 1.68 6.80 -2.38 -0.02 1.66 16 32 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.05 0.99 8.14 -2.39 -0.02 0.98 16 34 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 37 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 38 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.05 1.21 6.13 -2.38 -0.01 1.20 16 40 H 0.10 1.42 8.10 -2.39 -0.02 1.40 16 41 H 0.09 2.11 3.21 -2.39 -0.01 2.10 16 42 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 43 H 0.05 2.45 6.88 -2.38 -0.02 2.43 16 44 H 0.07 2.97 5.97 -2.39 -0.01 2.96 16 45 H -0.04 -2.03 8.12 -2.39 -0.02 -2.05 16 46 H 0.03 1.55 5.78 -2.39 -0.01 1.54 16 47 H 0.26 14.89 8.31 -92.72 -0.77 14.12 16 Total: -1.00 -71.17 337.80 2.16 -69.01 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: 0.93 Total: 13.83 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: 5.04 Total: -4.62 kcal Atomic # 7 Polarization: -97.41 SS G_CDS: -5.79 Total: -103.20 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -0.03 Total: -22.82 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.80 kcal Total: -71.17 2.16 -69.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078637444.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.273 kcal (2) G-P(sol) polarization free energy of solvation -71.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds