Wall clock time and date at job start Tue Mar 31 2020 06:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47523 * 2 1 4 4 C 1.50706 * 109.46827 * 240.00099 * 2 1 3 5 5 O 1.21285 * 119.99578 * 267.70851 * 4 2 1 6 6 N 1.34771 * 119.99970 * 87.70906 * 4 2 1 7 7 C 1.46930 * 120.62804 * 174.95454 * 6 4 2 8 8 H 1.08997 * 109.59069 * 246.45091 * 7 6 4 9 9 C 1.53000 * 109.58604 * 6.88782 * 7 6 4 10 10 C 1.53197 * 108.77235 * 126.66612 * 7 6 4 11 11 C 1.53042 * 109.30957 * 54.63848 * 10 7 6 12 12 C 1.53045 * 109.54169 * 298.63438 * 11 10 7 13 13 C 1.46927 * 120.63246 * 355.24191 * 6 4 2 14 14 H 1.08995 * 109.58383 * 353.12147 * 13 6 4 15 15 C 1.53001 * 109.58610 * 113.54460 * 13 6 4 16 16 N 1.46897 * 109.47288 * 120.00335 * 2 1 3 17 17 C 1.46897 * 111.00196 * 179.41057 * 16 2 1 18 18 C 1.46899 * 110.99782 * 303.36452 * 16 2 1 19 19 C 1.50700 * 109.47178 * 169.99963 * 18 16 2 20 20 H 1.07998 * 119.99936 * 359.97438 * 19 18 16 21 21 C 1.37881 * 120.00302 * 180.02562 * 19 18 16 22 22 N 1.31514 * 120.00379 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99561 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47321 * 90.00331 * 23 21 19 25 25 H 1.48499 * 109.47146 * 210.00176 * 23 21 19 26 26 H 1.48499 * 109.47372 * 330.00336 * 23 21 19 27 27 H 1.08996 * 109.47670 * 187.33465 * 1 2 3 28 28 H 1.09007 * 109.47024 * 307.33750 * 1 2 3 29 29 H 1.08998 * 109.47432 * 67.33030 * 1 2 3 30 30 H 1.08993 * 109.47451 * 56.70363 * 9 7 6 31 31 H 1.08998 * 109.46832 * 176.71182 * 9 7 6 32 32 H 1.08994 * 109.46874 * 296.70270 * 9 7 6 33 33 H 1.08992 * 109.50061 * 294.68812 * 10 7 6 34 34 H 1.08999 * 109.49902 * 174.58322 * 10 7 6 35 35 H 1.09001 * 109.46288 * 178.61713 * 11 10 7 36 36 H 1.08999 * 109.45144 * 58.64504 * 11 10 7 37 37 H 1.09000 * 109.49339 * 301.41462 * 12 11 10 38 38 H 1.08993 * 109.50153 * 181.31827 * 12 11 10 39 39 H 1.09004 * 109.47428 * 60.00046 * 15 13 6 40 40 H 1.09000 * 109.46892 * 179.97438 * 15 13 6 41 41 H 1.08998 * 109.47169 * 299.99748 * 15 13 6 42 42 H 1.09003 * 109.47068 * 64.01643 * 17 16 2 43 43 H 1.09005 * 109.47428 * 184.01439 * 17 16 2 44 44 H 1.08998 * 109.47098 * 304.01310 * 17 16 2 45 45 H 1.09002 * 109.47440 * 289.99884 * 18 16 2 46 46 H 1.08996 * 109.47067 * 49.99920 * 18 16 2 47 47 H 0.96998 * 119.99833 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.2739 -1.8982 -1.1887 6 7 2.2128 -0.0259 -2.3773 7 6 2.8052 -0.6781 -3.5531 8 1 3.7764 -0.2324 -3.7678 9 6 2.9731 -2.1741 -3.2796 10 6 1.8717 -0.4769 -4.7511 11 6 1.5970 1.0177 -4.9331 12 6 0.9046 1.5668 -3.6836 13 6 1.8270 1.3886 -2.4736 14 1 1.3014 1.6864 -1.5663 15 6 3.0784 2.2507 -2.6513 16 7 2.0197 -0.6925 1.1994 17 6 3.4881 -0.7244 1.2263 18 6 1.4841 -0.0745 2.4196 19 6 1.8020 -0.9476 3.6061 20 1 2.3471 -1.8695 3.4675 21 6 1.3962 -0.5698 4.8685 22 7 1.6742 -1.3315 5.9040 23 14 0.4528 1.0245 5.1082 24 1 -1.0037 0.7605 4.9893 25 1 0.7475 1.5764 6.4550 26 1 0.8645 2.0041 4.0709 27 1 -0.3634 -1.0192 0.1312 28 1 -0.3633 0.6233 0.8171 29 1 -0.3634 0.3961 -0.9482 30 1 2.0079 -2.6056 -3.0145 31 1 3.3579 -2.6658 -4.1730 32 1 3.6731 -2.3165 -2.4564 33 1 0.9325 -1.0002 -4.5724 34 1 2.3437 -0.8721 -5.6506 35 1 0.9527 1.1656 -5.7998 36 1 2.5391 1.5438 -5.0869 37 1 -0.0256 1.0241 -3.5150 38 1 0.6882 2.6259 -3.8232 39 1 3.5977 1.9540 -3.5626 40 1 2.7900 3.2994 -2.7229 41 1 3.7391 2.1128 -1.7954 42 1 3.8722 0.2929 1.3015 43 1 3.8233 -1.3039 2.0865 44 1 3.8583 -1.1858 0.3108 45 1 1.9373 0.9070 2.5589 46 1 0.4034 0.0341 2.3277 47 1 1.3883 -1.0659 6.7921 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078637447.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:12 Heat of formation + Delta-G solvation = -16.244824 kcal Electronic energy + Delta-G solvation = -24361.764757 eV Core-core repulsion = 21159.226214 eV Total energy + Delta-G solvation = -3202.538544 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.77283 -38.01299 -36.42815 -33.73999 -32.85007 -32.45084 -30.69425 -28.97870 -28.04308 -26.66655 -24.46612 -24.28599 -23.32675 -22.02662 -20.83919 -19.77948 -18.11137 -17.02167 -16.72941 -15.98195 -15.46777 -15.14441 -14.58810 -14.52464 -14.10020 -13.98721 -13.73544 -13.72488 -13.19167 -12.94414 -12.85177 -12.59081 -12.29976 -12.05422 -11.88697 -11.85079 -11.83035 -11.71470 -11.26580 -11.14825 -11.08018 -10.96552 -10.91976 -10.73677 -10.59545 -10.45532 -10.35661 -9.90202 -9.24966 -8.65018 -8.53016 -8.46157 -7.32634 -6.02252 -3.99145 2.92519 2.98475 3.28230 3.35668 3.36093 4.40575 4.42873 4.52295 4.61683 4.72840 4.77961 4.88859 4.98670 5.11372 5.22378 5.28441 5.28948 5.38539 5.43428 5.49398 5.50455 5.64616 5.69397 5.70132 5.74932 5.80251 5.86632 5.87521 5.94731 6.06655 6.10856 6.18345 6.25459 6.29731 6.47592 6.51659 6.73145 6.79053 6.86219 6.99495 7.50126 7.61929 7.90777 8.01869 8.55480 8.68590 9.08420 9.58799 11.11031 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027072 B = 0.004642 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.027440 B = 6030.864611 C = 6527.993582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.062 3.938 3 H 0.046 0.954 4 C 0.524 3.476 5 O -0.506 6.506 6 N -0.612 5.612 7 C 0.145 3.855 8 H 0.065 0.935 9 C -0.136 4.136 10 C -0.131 4.131 11 C -0.120 4.120 12 C -0.129 4.129 13 C 0.130 3.870 14 H 0.096 0.904 15 C -0.165 4.165 16 N -0.507 5.507 17 C 0.037 3.963 18 C 0.160 3.840 19 C -0.506 4.506 20 H 0.082 0.918 21 C 0.068 3.932 22 N -0.900 5.900 23 Si 0.873 3.127 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.268 1.268 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.037 0.963 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.059 0.941 42 H 0.007 0.993 43 H 0.082 0.918 44 H 0.053 0.947 45 H -0.013 1.013 46 H 0.031 0.969 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.038 8.615 -22.723 24.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.050 4.050 3 H 0.063 0.937 4 C 0.312 3.688 5 O -0.380 6.380 6 N -0.348 5.348 7 C 0.042 3.958 8 H 0.083 0.917 9 C -0.193 4.193 10 C -0.169 4.169 11 C -0.158 4.158 12 C -0.167 4.167 13 C 0.026 3.974 14 H 0.114 0.886 15 C -0.223 4.223 16 N -0.232 5.232 17 C -0.111 4.111 18 C 0.034 3.966 19 C -0.545 4.545 20 H 0.100 0.900 21 C -0.133 4.133 22 N -0.539 5.539 23 Si 0.700 3.300 24 H -0.201 1.201 25 H -0.212 1.212 26 H -0.193 1.193 27 H 0.094 0.906 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.056 0.944 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.078 0.922 42 H 0.026 0.974 43 H 0.100 0.900 44 H 0.071 0.929 45 H 0.005 0.995 46 H 0.049 0.951 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.021 7.442 -22.492 23.691 hybrid contribution -0.224 1.869 0.291 1.904 sum -0.245 9.310 -22.201 24.075 Atomic orbital electron populations 1.21816 0.92647 1.04085 1.01264 1.21666 0.97112 0.95329 0.90942 0.93659 1.20696 0.76938 0.87554 0.83618 1.90736 1.48792 1.14790 1.83652 1.48297 1.63557 1.10982 1.11985 1.21198 0.95230 0.94620 0.84743 0.91674 1.22216 1.04284 0.92687 1.00100 1.22014 1.00502 0.96524 0.97907 1.21545 1.00809 0.95905 0.97494 1.21921 0.98686 1.01453 0.94644 1.21339 0.95575 0.80971 0.99542 0.88629 1.22183 0.98000 0.99520 1.02582 1.61807 1.08393 1.52605 1.00393 1.22275 0.87670 0.98738 1.02428 1.20297 0.95224 0.93360 0.87671 1.21024 1.36344 1.07985 0.89104 0.90009 1.24885 0.95847 0.96660 0.95904 1.69893 1.47104 1.37809 0.99110 0.86902 0.80849 0.84623 0.77630 1.20082 1.21190 1.19329 0.90650 0.91168 0.92839 0.91016 0.94426 0.90695 0.91452 0.91110 0.91866 0.91624 0.91355 0.90798 0.91997 0.91490 0.92156 0.97406 0.89969 0.92873 0.99527 0.95140 0.92686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 8.34 37.16 0.31 -1.92 16 2 C 0.06 1.09 1.61 -68.86 -0.11 0.98 16 3 H 0.05 0.74 6.58 -51.93 -0.34 0.40 16 4 C 0.52 8.74 5.71 -10.99 -0.06 8.68 16 5 O -0.51 -9.98 10.94 5.55 0.06 -9.92 16 6 N -0.61 -7.84 2.68 -157.73 -0.42 -8.26 16 7 C 0.15 1.65 3.08 -67.59 -0.21 1.44 16 8 H 0.07 0.69 7.50 -51.93 -0.39 0.30 16 9 C -0.14 -1.80 7.59 37.16 0.28 -1.52 16 10 C -0.13 -1.18 5.37 -26.61 -0.14 -1.33 16 11 C -0.12 -0.91 5.68 -26.69 -0.15 -1.06 16 12 C -0.13 -1.05 5.55 -26.61 -0.15 -1.20 16 13 C 0.13 1.31 2.82 -67.60 -0.19 1.12 16 14 H 0.10 1.02 5.05 -51.93 -0.26 0.76 16 15 C -0.16 -1.45 9.03 37.16 0.34 -1.12 16 16 N -0.51 -11.20 4.34 -237.73 -1.03 -12.24 16 17 C 0.04 0.78 9.03 60.06 0.54 1.32 16 18 C 0.16 3.92 3.55 -4.98 -0.02 3.90 16 19 C -0.51 -14.64 9.07 -34.44 -0.31 -14.95 16 20 H 0.08 2.61 7.35 -52.49 -0.39 2.22 16 21 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 22 N -0.90 -27.85 13.96 55.43 0.77 -27.08 16 23 Si 0.87 21.38 27.47 -169.99 -4.67 16.71 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 27 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 28 H 0.07 1.12 6.57 -51.93 -0.34 0.78 16 29 H 0.05 0.68 7.54 -51.93 -0.39 0.28 16 30 H 0.07 1.10 6.83 -51.93 -0.35 0.75 16 31 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 1.18 6.67 -51.93 -0.35 0.83 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.46 6.49 -51.93 -0.34 0.13 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.51 5.72 -51.93 -0.30 0.21 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 43 H 0.08 1.89 6.86 -51.93 -0.36 1.54 16 44 H 0.05 1.06 6.24 -51.93 -0.32 0.74 16 45 H -0.01 -0.32 7.18 -51.93 -0.37 -0.69 16 46 H 0.03 0.73 5.31 -51.93 -0.28 0.45 16 47 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 343.66 15.07 5.18 5.18 Total: -1.00 -32.28 343.66 -8.25 -40.53 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -8.17 Total: -1.19 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: 0.03 Total: -3.75 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: -0.68 Total: -47.57 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.06 Total: -9.92 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.67 Total: 16.71 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.28 -8.25 -40.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078637447.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.290 kcal (2) G-P(sol) polarization free energy of solvation -32.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds