Wall clock time and date at job start Tue Mar 31 2020 06:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47523 * 2 1 4 4 C 1.50706 * 109.46827 * 240.00099 * 2 1 3 5 5 O 1.21285 * 119.99578 * 267.70851 * 4 2 1 6 6 N 1.34771 * 119.99970 * 87.70906 * 4 2 1 7 7 C 1.46930 * 120.62804 * 174.95454 * 6 4 2 8 8 H 1.08997 * 109.59069 * 246.45091 * 7 6 4 9 9 C 1.53000 * 109.58604 * 6.88782 * 7 6 4 10 10 C 1.53197 * 108.77235 * 126.66612 * 7 6 4 11 11 C 1.53042 * 109.30957 * 54.63848 * 10 7 6 12 12 C 1.53045 * 109.54169 * 298.63438 * 11 10 7 13 13 C 1.46927 * 120.63246 * 355.24191 * 6 4 2 14 14 H 1.08995 * 109.58383 * 353.12147 * 13 6 4 15 15 C 1.53001 * 109.58610 * 113.54460 * 13 6 4 16 16 N 1.46897 * 109.47288 * 120.00335 * 2 1 3 17 17 C 1.46897 * 111.00196 * 179.41057 * 16 2 1 18 18 C 1.46899 * 110.99782 * 303.36452 * 16 2 1 19 19 C 1.50700 * 109.47178 * 169.99963 * 18 16 2 20 20 H 1.07998 * 119.99936 * 359.97438 * 19 18 16 21 21 C 1.37881 * 120.00302 * 180.02562 * 19 18 16 22 22 N 1.31514 * 120.00379 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99561 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47321 * 90.00331 * 23 21 19 25 25 H 1.48499 * 109.47146 * 210.00176 * 23 21 19 26 26 H 1.48499 * 109.47372 * 330.00336 * 23 21 19 27 27 H 1.08996 * 109.47670 * 187.33465 * 1 2 3 28 28 H 1.09007 * 109.47024 * 307.33750 * 1 2 3 29 29 H 1.08998 * 109.47432 * 67.33030 * 1 2 3 30 30 H 1.08993 * 109.47451 * 56.70363 * 9 7 6 31 31 H 1.08998 * 109.46832 * 176.71182 * 9 7 6 32 32 H 1.08994 * 109.46874 * 296.70270 * 9 7 6 33 33 H 1.08992 * 109.50061 * 294.68812 * 10 7 6 34 34 H 1.08999 * 109.49902 * 174.58322 * 10 7 6 35 35 H 1.09001 * 109.46288 * 178.61713 * 11 10 7 36 36 H 1.08999 * 109.45144 * 58.64504 * 11 10 7 37 37 H 1.09000 * 109.49339 * 301.41462 * 12 11 10 38 38 H 1.08993 * 109.50153 * 181.31827 * 12 11 10 39 39 H 1.09004 * 109.47428 * 60.00046 * 15 13 6 40 40 H 1.09000 * 109.46892 * 179.97438 * 15 13 6 41 41 H 1.08998 * 109.47169 * 299.99748 * 15 13 6 42 42 H 1.09003 * 109.47068 * 64.01643 * 17 16 2 43 43 H 1.09005 * 109.47428 * 184.01439 * 17 16 2 44 44 H 1.08998 * 109.47098 * 304.01310 * 17 16 2 45 45 H 1.09002 * 109.47440 * 289.99884 * 18 16 2 46 46 H 1.08996 * 109.47067 * 49.99920 * 18 16 2 47 47 H 0.96998 * 119.99833 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.2739 -1.8982 -1.1887 6 7 2.2128 -0.0259 -2.3773 7 6 2.8052 -0.6781 -3.5531 8 1 3.7764 -0.2324 -3.7678 9 6 2.9731 -2.1741 -3.2796 10 6 1.8717 -0.4769 -4.7511 11 6 1.5970 1.0177 -4.9331 12 6 0.9046 1.5668 -3.6836 13 6 1.8270 1.3886 -2.4736 14 1 1.3014 1.6864 -1.5663 15 6 3.0784 2.2507 -2.6513 16 7 2.0197 -0.6925 1.1994 17 6 3.4881 -0.7244 1.2263 18 6 1.4841 -0.0745 2.4196 19 6 1.8020 -0.9476 3.6061 20 1 2.3471 -1.8695 3.4675 21 6 1.3962 -0.5698 4.8685 22 7 1.6742 -1.3315 5.9040 23 14 0.4528 1.0245 5.1082 24 1 -1.0037 0.7605 4.9893 25 1 0.7475 1.5764 6.4550 26 1 0.8645 2.0041 4.0709 27 1 -0.3634 -1.0192 0.1312 28 1 -0.3633 0.6233 0.8171 29 1 -0.3634 0.3961 -0.9482 30 1 2.0079 -2.6056 -3.0145 31 1 3.3579 -2.6658 -4.1730 32 1 3.6731 -2.3165 -2.4564 33 1 0.9325 -1.0002 -4.5724 34 1 2.3437 -0.8721 -5.6506 35 1 0.9527 1.1656 -5.7998 36 1 2.5391 1.5438 -5.0869 37 1 -0.0256 1.0241 -3.5150 38 1 0.6882 2.6259 -3.8232 39 1 3.5977 1.9540 -3.5626 40 1 2.7900 3.2994 -2.7229 41 1 3.7391 2.1128 -1.7954 42 1 3.8722 0.2929 1.3015 43 1 3.8233 -1.3039 2.0865 44 1 3.8583 -1.1858 0.3108 45 1 1.9373 0.9070 2.5589 46 1 0.4034 0.0341 2.3277 47 1 1.3883 -1.0659 6.7921 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078637447.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:11 Heat of formation + Delta-G solvation = -37.927818 kcal Electronic energy + Delta-G solvation = -24362.705002 eV Core-core repulsion = 21159.226214 eV Total energy + Delta-G solvation = -3203.478789 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.88300 -39.20128 -37.90350 -34.98723 -34.33387 -33.77674 -32.08380 -30.09581 -29.83697 -27.43219 -26.23146 -25.62809 -24.25978 -23.22526 -22.05745 -21.12887 -19.41778 -18.76901 -18.03708 -17.05689 -16.79514 -16.45510 -16.02190 -15.79311 -15.50906 -15.17656 -14.91668 -14.78807 -14.50776 -14.37792 -13.97635 -13.76453 -13.57958 -13.54685 -13.18609 -12.93288 -12.86679 -12.76986 -12.73078 -12.51644 -12.44273 -12.27551 -12.12262 -11.97547 -11.86153 -11.74258 -11.46451 -11.44107 -11.28204 -10.76275 -9.94455 -9.48192 -9.01835 -8.26844 -6.31196 1.35628 1.38492 1.48719 1.65101 1.93112 2.35918 3.05253 3.14661 3.48374 3.74569 3.89208 3.98185 4.04260 4.07164 4.12854 4.22713 4.31661 4.35960 4.44370 4.51342 4.52461 4.66451 4.69939 4.72959 4.77222 4.84657 4.91381 4.95695 4.97343 5.03794 5.07855 5.10923 5.12343 5.17681 5.20585 5.24264 5.29681 5.42080 5.53246 5.56376 5.77568 5.94614 6.23662 6.44418 6.64719 6.74679 7.30743 7.33370 8.90381 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027072 B = 0.004642 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.027440 B = 6030.864611 C = 6527.993582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.059 3.941 3 H 0.067 0.933 4 C 0.521 3.479 5 O -0.549 6.549 6 N -0.603 5.603 7 C 0.141 3.859 8 H 0.080 0.920 9 C -0.128 4.128 10 C -0.125 4.125 11 C -0.117 4.117 12 C -0.125 4.125 13 C 0.120 3.880 14 H 0.092 0.908 15 C -0.161 4.161 16 N -0.533 5.533 17 C 0.049 3.951 18 C 0.174 3.826 19 C -0.520 4.520 20 H 0.029 0.971 21 C 0.006 3.994 22 N -0.951 5.951 23 Si 0.951 3.049 24 H -0.261 1.261 25 H -0.282 1.282 26 H -0.244 1.244 27 H 0.050 0.950 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.044 0.956 31 H 0.060 0.940 32 H 0.042 0.958 33 H 0.053 0.947 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.098 0.902 39 H 0.070 0.930 40 H 0.089 0.911 41 H 0.041 0.959 42 H 0.023 0.977 43 H 0.047 0.953 44 H 0.059 0.941 45 H -0.007 1.007 46 H 0.043 0.957 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.113 12.306 -25.532 28.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.052 4.052 3 H 0.085 0.915 4 C 0.309 3.691 5 O -0.426 6.426 6 N -0.337 5.337 7 C 0.039 3.961 8 H 0.098 0.902 9 C -0.185 4.185 10 C -0.164 4.164 11 C -0.154 4.154 12 C -0.163 4.163 13 C 0.017 3.983 14 H 0.110 0.890 15 C -0.218 4.218 16 N -0.259 5.259 17 C -0.099 4.099 18 C 0.047 3.953 19 C -0.558 4.558 20 H 0.047 0.953 21 C -0.191 4.191 22 N -0.592 5.592 23 Si 0.773 3.227 24 H -0.186 1.186 25 H -0.208 1.208 26 H -0.167 1.167 27 H 0.069 0.931 28 H 0.091 0.909 29 H 0.107 0.893 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.107 0.893 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.117 0.883 39 H 0.089 0.911 40 H 0.108 0.892 41 H 0.061 0.939 42 H 0.041 0.959 43 H 0.066 0.934 44 H 0.077 0.923 45 H 0.011 0.989 46 H 0.061 0.939 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.167 11.166 -25.361 27.735 hybrid contribution 0.212 0.617 1.095 1.275 sum -0.955 11.783 -24.266 26.993 Atomic orbital electron populations 1.21802 0.91324 1.02879 1.03362 1.21781 0.98205 0.95870 0.89367 0.91538 1.20583 0.76970 0.87071 0.84478 1.90744 1.50940 1.16511 1.84452 1.48343 1.62180 1.12128 1.11081 1.21363 0.96638 0.93047 0.85054 0.90221 1.22034 1.01999 0.94678 0.99806 1.21973 0.99236 0.98049 0.97111 1.21555 1.01712 0.94349 0.97776 1.21924 0.97685 1.02990 0.93688 1.21653 0.96833 0.79167 1.00653 0.89004 1.22160 0.96920 1.00566 1.02194 1.61617 1.08690 1.54167 1.01393 1.22078 0.87691 0.98987 1.01141 1.20036 0.95894 0.92348 0.87007 1.21247 1.35942 1.07033 0.91583 0.95290 1.25915 0.96884 1.01146 0.95161 1.70071 1.48742 1.40459 0.99878 0.85670 0.79458 0.79369 0.78212 1.18621 1.20790 1.16726 0.93070 0.90887 0.89274 0.93670 0.92145 0.93850 0.92809 0.89319 0.90189 0.90458 0.92106 0.88319 0.91142 0.89179 0.93942 0.95869 0.93378 0.92262 0.98938 0.93893 0.92410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.11 8.34 71.98 0.60 -3.51 16 2 C 0.06 2.03 1.61 44.17 0.07 2.11 16 3 H 0.07 2.02 6.58 -2.39 -0.02 2.00 16 4 C 0.52 17.29 5.71 87.66 0.50 17.79 16 5 O -0.55 -22.53 10.94 -3.05 -0.03 -22.57 16 6 N -0.60 -14.44 2.68 -771.32 -2.07 -16.50 16 7 C 0.14 2.96 3.08 44.98 0.14 3.10 16 8 H 0.08 1.48 7.50 -2.39 -0.02 1.46 16 9 C -0.13 -3.42 7.59 71.98 0.55 -2.87 16 10 C -0.13 -1.89 5.37 30.67 0.16 -1.73 16 11 C -0.12 -1.25 5.68 30.62 0.17 -1.08 16 12 C -0.12 -1.51 5.55 30.67 0.17 -1.34 16 13 C 0.12 2.03 2.82 44.97 0.13 2.15 16 14 H 0.09 1.64 5.05 -2.39 -0.01 1.62 16 15 C -0.16 -2.24 9.03 71.98 0.65 -1.59 16 16 N -0.53 -23.99 4.34 -906.05 -3.93 -27.93 16 17 C 0.05 2.15 9.03 127.69 1.15 3.31 16 18 C 0.17 8.47 3.55 85.56 0.30 8.77 16 19 C -0.52 -31.22 9.07 25.60 0.23 -30.99 16 20 H 0.03 1.98 7.35 -2.91 -0.02 1.96 16 21 C 0.01 0.35 5.47 84.66 0.46 0.81 16 22 N -0.95 -60.88 13.96 21.45 0.30 -60.58 16 23 Si 0.95 43.67 27.47 68.60 1.88 45.55 16 24 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 25 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 26 H -0.24 -10.17 6.54 99.48 0.65 -9.52 16 27 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.07 2.15 6.57 -2.38 -0.02 2.13 16 29 H 0.09 2.01 7.54 -2.39 -0.02 1.99 16 30 H 0.04 1.43 6.83 -2.39 -0.02 1.42 16 31 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.04 1.42 6.67 -2.39 -0.02 1.40 16 33 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.08 0.70 6.49 -2.39 -0.02 0.68 16 37 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.07 0.87 5.72 -2.39 -0.01 0.85 16 40 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.05 2.37 6.86 -2.38 -0.02 2.36 16 44 H 0.06 2.47 6.24 -2.39 -0.01 2.46 16 45 H -0.01 -0.33 7.18 -2.39 -0.02 -0.35 16 46 H 0.04 1.99 5.31 -2.39 -0.01 1.98 16 47 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 Total: -1.00 -74.88 343.66 2.32 -72.56 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: 0.88 Total: 14.54 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: 5.29 Total: -5.07 kcal Atomic # 7 Polarization: -99.31 SS G_CDS: -5.70 Total: -105.01 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -0.03 Total: -22.57 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.88 Total: 45.55 kcal Total: -74.88 2.32 -72.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078637447.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.628 kcal (2) G-P(sol) polarization free energy of solvation -74.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds