Wall clock time and date at job start Tue Mar 31 2020 06:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47242 * 2 1 4 4 C 1.50701 * 109.47080 * 240.00601 * 2 1 3 5 5 O 1.21290 * 119.99908 * 247.46119 * 4 2 1 6 6 N 1.34778 * 120.00233 * 67.46011 * 4 2 1 7 7 C 1.46923 * 120.63083 * 4.59204 * 6 4 2 8 8 H 1.09002 * 109.58632 * 6.63246 * 7 6 4 9 9 C 1.52992 * 109.58950 * 246.20373 * 7 6 4 10 10 C 1.53628 * 108.54096 * 126.36871 * 7 6 4 11 11 C 1.53041 * 109.24210 * 54.85875 * 10 7 6 12 12 C 1.53041 * 109.53582 * 298.51283 * 11 10 7 13 13 C 1.46929 * 120.62663 * 184.87588 * 6 4 2 14 14 H 1.09007 * 109.58325 * 113.80265 * 13 6 4 15 15 C 1.52991 * 109.59195 * 353.37195 * 13 6 4 16 16 N 1.46898 * 109.47550 * 120.00190 * 2 1 3 17 17 C 1.46902 * 110.99728 * 58.95571 * 16 2 1 18 18 C 1.46892 * 111.00117 * 295.00215 * 16 2 1 19 19 C 1.50701 * 109.47544 * 189.99940 * 18 16 2 20 20 H 1.08005 * 119.99828 * 359.97438 * 19 18 16 21 21 C 1.37877 * 120.00305 * 180.02562 * 19 18 16 22 22 N 1.31513 * 119.99956 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 119.99884 * 359.97438 * 21 19 18 24 24 H 1.48493 * 109.47082 * 90.00260 * 23 21 19 25 25 H 1.48505 * 109.46912 * 210.00634 * 23 21 19 26 26 H 1.48502 * 109.47205 * 330.00334 * 23 21 19 27 27 H 1.09001 * 109.46994 * 173.45759 * 1 2 3 28 28 H 1.09002 * 109.47526 * 53.45768 * 1 2 3 29 29 H 1.09005 * 109.47030 * 293.45476 * 1 2 3 30 30 H 1.08998 * 109.47081 * 60.00068 * 9 7 6 31 31 H 1.09002 * 109.47144 * 180.02562 * 9 7 6 32 32 H 1.09000 * 109.47054 * 300.00341 * 9 7 6 33 33 H 1.09002 * 109.63197 * 294.87033 * 10 7 6 34 34 H 1.09001 * 109.45511 * 174.74310 * 10 7 6 35 35 H 1.08996 * 109.46294 * 178.48910 * 11 10 7 36 36 H 1.09002 * 109.45565 * 58.52482 * 11 10 7 37 37 H 1.08996 * 109.49810 * 301.40944 * 12 11 10 38 38 H 1.09004 * 109.52348 * 181.33421 * 12 11 10 39 39 H 1.08999 * 109.47246 * 63.67880 * 15 13 6 40 40 H 1.08997 * 109.47261 * 183.67919 * 15 13 6 41 41 H 1.09005 * 109.46948 * 303.67796 * 15 13 6 42 42 H 1.08992 * 109.47292 * 60.00210 * 17 16 2 43 43 H 1.09004 * 109.46811 * 180.02562 * 17 16 2 44 44 H 1.09005 * 109.47167 * 299.99541 * 17 16 2 45 45 H 1.09005 * 109.47235 * 309.99524 * 18 16 2 46 46 H 1.09001 * 109.47455 * 69.99460 * 18 16 2 47 47 H 0.96995 * 119.99854 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.6140 -1.7693 -1.1245 6 7 1.8351 -0.1688 -2.4489 7 6 1.2222 1.1593 -2.5876 8 1 1.0987 1.6093 -1.6026 9 6 -0.1413 1.0264 -3.2687 10 6 2.1470 2.0370 -3.4447 11 6 2.4232 1.3307 -4.7740 12 6 3.1317 0.0003 -4.5091 13 6 2.2233 -0.8982 -3.6639 14 1 1.3318 -1.1571 -4.2351 15 6 2.9772 -2.1724 -3.2785 16 7 2.0197 -0.6925 1.1994 17 6 1.5284 -2.0762 1.2458 18 6 1.6488 0.0390 2.4180 19 6 2.3680 -0.5572 3.6005 20 1 3.0338 -1.3961 3.4607 21 6 2.1754 -0.0326 4.8609 22 7 2.8034 -0.5527 5.8927 23 14 1.0233 1.4178 5.1027 24 1 -0.3498 0.9199 5.3708 25 1 1.4881 2.2325 6.2540 26 1 1.0157 2.2540 3.8755 27 1 -0.3633 -1.0210 -0.1171 28 1 -0.3634 0.6119 -0.8256 29 1 -0.3633 0.4091 0.9428 30 1 -0.7884 0.3900 -2.6651 31 1 -0.5940 2.0127 -3.3710 32 1 -0.0127 0.5818 -4.2556 33 1 3.0871 2.2017 -2.9181 34 1 1.6639 2.9953 -3.6353 35 1 3.0574 1.9624 -5.3959 36 1 1.4806 1.1440 -5.2886 37 1 4.0624 0.1843 -3.9726 38 1 3.3495 -0.4915 -5.4572 39 1 2.3127 -2.8335 -2.7221 40 1 3.3210 -2.6782 -4.1807 41 1 3.8351 -1.9134 -2.6579 42 1 1.8763 -2.6150 0.3646 43 1 1.9055 -2.5656 2.1438 44 1 0.4385 -2.0743 1.2639 45 1 1.9298 1.0869 2.3125 46 1 0.5723 -0.0346 2.5726 47 1 2.6682 -0.1833 6.7793 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078637450.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:15 Heat of formation + Delta-G solvation = -10.153779 kcal Electronic energy + Delta-G solvation = -24394.271601 eV Core-core repulsion = 21191.997185 eV Total energy + Delta-G solvation = -3202.274416 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.82757 -38.11229 -36.49372 -33.80902 -32.88488 -32.46327 -30.19551 -29.09878 -27.60882 -26.63935 -25.31535 -23.99111 -23.36610 -22.05027 -20.80650 -19.68680 -18.09451 -16.85011 -16.74886 -16.06843 -15.35552 -15.30695 -14.57044 -14.40344 -14.10213 -14.05105 -13.77119 -13.52866 -13.12827 -13.10122 -13.01236 -12.76919 -12.36785 -12.06748 -11.92385 -11.89066 -11.74308 -11.45788 -11.17116 -11.10709 -11.07086 -10.97819 -10.87319 -10.71505 -10.58625 -10.52513 -10.23316 -9.82296 -9.26021 -8.54649 -8.49698 -8.44930 -7.25682 -6.01342 -3.98090 2.92544 2.98014 3.28547 3.36065 3.36911 4.41246 4.43723 4.53626 4.63162 4.76691 4.84629 4.91349 4.98998 5.11545 5.23215 5.28954 5.30033 5.32465 5.38884 5.43316 5.49392 5.64612 5.68866 5.70895 5.74821 5.82975 5.84577 5.87571 5.95323 5.99601 6.12109 6.24321 6.30340 6.35405 6.45848 6.53498 6.78589 6.88663 6.95584 7.12503 7.52519 7.64686 7.97040 8.08831 8.55170 8.70613 9.09681 9.59927 11.12025 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025334 B = 0.004682 C = 0.004305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.965094 B = 5979.141489 C = 6502.694891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.060 3.940 3 H 0.095 0.905 4 C 0.526 3.474 5 O -0.509 6.509 6 N -0.609 5.609 7 C 0.130 3.870 8 H 0.097 0.903 9 C -0.166 4.166 10 C -0.130 4.130 11 C -0.120 4.120 12 C -0.132 4.132 13 C 0.146 3.854 14 H 0.065 0.935 15 C -0.136 4.136 16 N -0.507 5.507 17 C 0.019 3.981 18 C 0.162 3.838 19 C -0.506 4.506 20 H 0.082 0.918 21 C 0.068 3.932 22 N -0.900 5.900 23 Si 0.874 3.126 24 H -0.278 1.278 25 H -0.286 1.286 26 H -0.268 1.268 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.037 0.963 41 H 0.074 0.926 42 H 0.084 0.916 43 H 0.074 0.926 44 H 0.006 0.994 45 H 0.025 0.975 46 H -0.013 1.013 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.576 5.067 -23.207 24.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.052 4.052 3 H 0.113 0.887 4 C 0.315 3.685 5 O -0.384 6.384 6 N -0.345 5.345 7 C 0.026 3.974 8 H 0.115 0.885 9 C -0.224 4.224 10 C -0.169 4.169 11 C -0.157 4.157 12 C -0.170 4.170 13 C 0.043 3.957 14 H 0.083 0.917 15 C -0.193 4.193 16 N -0.230 5.230 17 C -0.129 4.129 18 C 0.036 3.964 19 C -0.544 4.544 20 H 0.100 0.900 21 C -0.133 4.133 22 N -0.540 5.540 23 Si 0.702 3.298 24 H -0.204 1.204 25 H -0.212 1.212 26 H -0.192 1.192 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.055 0.945 41 H 0.093 0.907 42 H 0.102 0.898 43 H 0.093 0.907 44 H 0.024 0.976 45 H 0.043 0.957 46 H 0.004 0.996 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.698 4.475 -22.941 23.841 hybrid contribution -1.576 1.038 0.343 1.919 sum -6.275 5.513 -22.598 24.092 Atomic orbital electron populations 1.22570 0.96409 1.02717 1.03063 1.21699 0.93520 0.98866 0.91147 0.88723 1.20706 0.78482 0.85528 0.83774 1.90643 1.40102 1.22436 1.85185 1.48250 1.62343 1.18391 1.05540 1.21445 0.92354 0.83132 1.00446 0.88539 1.22243 0.96387 1.02438 1.01372 1.22010 1.00232 0.98258 0.96368 1.21538 1.00667 0.96470 0.97033 1.22017 0.99252 0.95860 0.99893 1.21190 0.96832 0.92315 0.85378 0.91734 1.22220 1.02015 0.95593 0.99481 1.61985 1.58256 1.02471 1.00305 1.22654 0.95843 0.90303 1.04119 1.20238 0.93919 0.94233 0.88017 1.21036 1.26607 1.17358 0.89386 0.90015 1.24892 0.95800 0.96744 0.95912 1.69894 1.42977 1.41769 0.99334 0.86881 0.81478 0.83469 0.78009 1.20378 1.21157 1.19235 0.92036 0.91870 0.91047 0.91867 0.91477 0.91991 0.91200 0.90839 0.91874 0.91692 0.91347 0.91147 0.90914 0.94471 0.90742 0.89776 0.90700 0.97598 0.95652 0.99573 0.92707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.80 8.10 37.16 0.30 -2.50 16 2 C 0.06 1.04 1.91 -68.87 -0.13 0.91 16 3 H 0.09 1.55 6.97 -51.93 -0.36 1.19 16 4 C 0.53 8.59 6.74 -10.98 -0.07 8.52 16 5 O -0.51 -9.68 9.01 5.55 0.05 -9.63 16 6 N -0.61 -7.59 2.68 -157.48 -0.42 -8.01 16 7 C 0.13 1.27 2.37 -67.38 -0.16 1.11 16 8 H 0.10 1.00 4.93 -51.93 -0.26 0.74 16 9 C -0.17 -1.33 8.56 37.15 0.32 -1.02 16 10 C -0.13 -1.09 5.58 -26.38 -0.15 -1.24 16 11 C -0.12 -0.92 5.68 -26.69 -0.15 -1.07 16 12 C -0.13 -1.21 5.37 -26.61 -0.14 -1.35 16 13 C 0.15 1.62 3.07 -67.60 -0.21 1.41 16 14 H 0.06 0.65 7.48 -51.93 -0.39 0.26 16 15 C -0.14 -1.77 7.59 37.15 0.28 -1.48 16 16 N -0.51 -11.20 4.58 -237.74 -1.09 -12.29 16 17 C 0.02 0.40 8.58 60.07 0.52 0.91 16 18 C 0.16 3.98 3.24 -4.98 -0.02 3.96 16 19 C -0.51 -14.71 9.01 -34.44 -0.31 -15.02 16 20 H 0.08 2.63 7.37 -52.48 -0.39 2.24 16 21 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 22 N -0.90 -28.00 13.96 55.43 0.77 -27.22 16 23 Si 0.87 21.52 27.47 -169.99 -4.67 16.86 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 27 H 0.06 0.94 6.76 -51.93 -0.35 0.59 16 28 H 0.06 0.73 4.35 -51.93 -0.23 0.51 16 29 H 0.07 1.15 6.45 -51.93 -0.34 0.81 16 30 H 0.06 0.56 6.80 -51.93 -0.35 0.21 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.47 5.71 -51.93 -0.30 0.17 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.45 6.49 -51.93 -0.34 0.12 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 1.09 6.71 -51.93 -0.35 0.74 16 40 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 1.15 6.79 -51.93 -0.35 0.80 16 42 H 0.08 1.76 5.18 -51.93 -0.27 1.49 16 43 H 0.07 1.78 6.76 -51.93 -0.35 1.43 16 44 H 0.01 0.11 6.43 -51.93 -0.33 -0.22 16 45 H 0.03 0.62 7.06 -51.93 -0.37 0.26 16 46 H -0.01 -0.32 6.22 -51.93 -0.32 -0.64 16 47 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 333.48 15.07 5.03 5.03 Total: -1.00 -32.15 333.48 -8.11 -40.27 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -7.76 Total: -0.04 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: -0.02 Total: -4.96 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: -0.74 Total: -47.52 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.05 Total: -9.63 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.15 -8.11 -40.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078637450.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.115 kcal (2) G-P(sol) polarization free energy of solvation -32.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds