Wall clock time and date at job start Tue Mar 31 2020 06:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47242 * 2 1 4 4 C 1.50701 * 109.47080 * 240.00601 * 2 1 3 5 5 O 1.21290 * 119.99908 * 247.46119 * 4 2 1 6 6 N 1.34778 * 120.00233 * 67.46011 * 4 2 1 7 7 C 1.46923 * 120.63083 * 4.59204 * 6 4 2 8 8 H 1.09002 * 109.58632 * 6.63246 * 7 6 4 9 9 C 1.52992 * 109.58950 * 246.20373 * 7 6 4 10 10 C 1.53628 * 108.54096 * 126.36871 * 7 6 4 11 11 C 1.53041 * 109.24210 * 54.85875 * 10 7 6 12 12 C 1.53041 * 109.53582 * 298.51283 * 11 10 7 13 13 C 1.46929 * 120.62663 * 184.87588 * 6 4 2 14 14 H 1.09007 * 109.58325 * 113.80265 * 13 6 4 15 15 C 1.52991 * 109.59195 * 353.37195 * 13 6 4 16 16 N 1.46898 * 109.47550 * 120.00190 * 2 1 3 17 17 C 1.46902 * 110.99728 * 58.95571 * 16 2 1 18 18 C 1.46892 * 111.00117 * 295.00215 * 16 2 1 19 19 C 1.50701 * 109.47544 * 189.99940 * 18 16 2 20 20 H 1.08005 * 119.99828 * 359.97438 * 19 18 16 21 21 C 1.37877 * 120.00305 * 180.02562 * 19 18 16 22 22 N 1.31513 * 119.99956 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 119.99884 * 359.97438 * 21 19 18 24 24 H 1.48493 * 109.47082 * 90.00260 * 23 21 19 25 25 H 1.48505 * 109.46912 * 210.00634 * 23 21 19 26 26 H 1.48502 * 109.47205 * 330.00334 * 23 21 19 27 27 H 1.09001 * 109.46994 * 173.45759 * 1 2 3 28 28 H 1.09002 * 109.47526 * 53.45768 * 1 2 3 29 29 H 1.09005 * 109.47030 * 293.45476 * 1 2 3 30 30 H 1.08998 * 109.47081 * 60.00068 * 9 7 6 31 31 H 1.09002 * 109.47144 * 180.02562 * 9 7 6 32 32 H 1.09000 * 109.47054 * 300.00341 * 9 7 6 33 33 H 1.09002 * 109.63197 * 294.87033 * 10 7 6 34 34 H 1.09001 * 109.45511 * 174.74310 * 10 7 6 35 35 H 1.08996 * 109.46294 * 178.48910 * 11 10 7 36 36 H 1.09002 * 109.45565 * 58.52482 * 11 10 7 37 37 H 1.08996 * 109.49810 * 301.40944 * 12 11 10 38 38 H 1.09004 * 109.52348 * 181.33421 * 12 11 10 39 39 H 1.08999 * 109.47246 * 63.67880 * 15 13 6 40 40 H 1.08997 * 109.47261 * 183.67919 * 15 13 6 41 41 H 1.09005 * 109.46948 * 303.67796 * 15 13 6 42 42 H 1.08992 * 109.47292 * 60.00210 * 17 16 2 43 43 H 1.09004 * 109.46811 * 180.02562 * 17 16 2 44 44 H 1.09005 * 109.47167 * 299.99541 * 17 16 2 45 45 H 1.09005 * 109.47235 * 309.99524 * 18 16 2 46 46 H 1.09001 * 109.47455 * 69.99460 * 18 16 2 47 47 H 0.96995 * 119.99854 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.6140 -1.7693 -1.1245 6 7 1.8351 -0.1688 -2.4489 7 6 1.2222 1.1593 -2.5876 8 1 1.0987 1.6093 -1.6026 9 6 -0.1413 1.0264 -3.2687 10 6 2.1470 2.0370 -3.4447 11 6 2.4232 1.3307 -4.7740 12 6 3.1317 0.0003 -4.5091 13 6 2.2233 -0.8982 -3.6639 14 1 1.3318 -1.1571 -4.2351 15 6 2.9772 -2.1724 -3.2785 16 7 2.0197 -0.6925 1.1994 17 6 1.5284 -2.0762 1.2458 18 6 1.6488 0.0390 2.4180 19 6 2.3680 -0.5572 3.6005 20 1 3.0338 -1.3961 3.4607 21 6 2.1754 -0.0326 4.8609 22 7 2.8034 -0.5527 5.8927 23 14 1.0233 1.4178 5.1027 24 1 -0.3498 0.9199 5.3708 25 1 1.4881 2.2325 6.2540 26 1 1.0157 2.2540 3.8755 27 1 -0.3633 -1.0210 -0.1171 28 1 -0.3634 0.6119 -0.8256 29 1 -0.3633 0.4091 0.9428 30 1 -0.7884 0.3900 -2.6651 31 1 -0.5940 2.0127 -3.3710 32 1 -0.0127 0.5818 -4.2556 33 1 3.0871 2.2017 -2.9181 34 1 1.6639 2.9953 -3.6353 35 1 3.0574 1.9624 -5.3959 36 1 1.4806 1.1440 -5.2886 37 1 4.0624 0.1843 -3.9726 38 1 3.3495 -0.4915 -5.4572 39 1 2.3127 -2.8335 -2.7221 40 1 3.3210 -2.6782 -4.1807 41 1 3.8351 -1.9134 -2.6579 42 1 1.8763 -2.6150 0.3646 43 1 1.9055 -2.5656 2.1438 44 1 0.4385 -2.0743 1.2639 45 1 1.9298 1.0869 2.3125 46 1 0.5723 -0.0346 2.5726 47 1 2.6682 -0.1833 6.7793 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078637450.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:14 Heat of formation + Delta-G solvation = -32.136618 kcal Electronic energy + Delta-G solvation = -24395.224848 eV Core-core repulsion = 21191.997185 eV Total energy + Delta-G solvation = -3203.227663 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.93222 -39.30290 -37.91480 -35.05954 -34.35468 -33.80287 -31.63866 -30.00185 -29.54141 -27.42205 -26.90416 -25.41241 -24.34306 -23.20214 -22.01550 -21.05028 -19.33009 -18.84244 -17.90453 -17.12241 -16.59196 -16.43329 -16.07351 -15.75728 -15.55214 -15.33454 -14.90351 -14.73379 -14.48261 -14.29382 -14.09044 -13.95268 -13.67090 -13.35424 -13.12127 -12.89558 -12.87503 -12.77110 -12.60226 -12.46707 -12.35318 -12.31115 -12.02559 -11.93485 -11.76249 -11.72453 -11.48667 -11.45529 -11.23468 -10.78490 -9.82261 -9.46106 -8.94209 -8.27344 -6.31657 1.34617 1.37789 1.48574 1.68180 1.94458 2.35477 3.05079 3.24888 3.50134 3.75983 3.90223 3.99207 4.05934 4.08158 4.09085 4.24290 4.37298 4.45102 4.51844 4.53113 4.57671 4.65376 4.68983 4.73869 4.78313 4.86420 4.89593 4.98619 5.03033 5.05297 5.09752 5.14417 5.17432 5.19967 5.26188 5.27590 5.34013 5.46380 5.53005 5.59280 5.81439 5.97194 6.30645 6.45896 6.68388 6.74535 7.30758 7.34384 8.90018 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025334 B = 0.004682 C = 0.004305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.965094 B = 5979.141489 C = 6502.694891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.058 3.942 3 H 0.105 0.895 4 C 0.522 3.478 5 O -0.548 6.548 6 N -0.600 5.600 7 C 0.120 3.880 8 H 0.092 0.908 9 C -0.162 4.162 10 C -0.128 4.128 11 C -0.115 4.115 12 C -0.128 4.128 13 C 0.143 3.857 14 H 0.086 0.914 15 C -0.128 4.128 16 N -0.533 5.533 17 C 0.033 3.967 18 C 0.176 3.824 19 C -0.520 4.520 20 H 0.028 0.972 21 C 0.005 3.995 22 N -0.951 5.951 23 Si 0.952 3.048 24 H -0.266 1.266 25 H -0.281 1.281 26 H -0.241 1.241 27 H 0.054 0.946 28 H 0.099 0.901 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.052 0.948 34 H 0.098 0.902 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.047 0.953 38 H 0.089 0.911 39 H 0.047 0.953 40 H 0.059 0.941 41 H 0.041 0.959 42 H 0.088 0.912 43 H 0.036 0.964 44 H 0.020 0.980 45 H 0.034 0.966 46 H -0.003 1.003 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.064 8.010 -26.181 28.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.054 4.054 3 H 0.123 0.877 4 C 0.310 3.690 5 O -0.426 6.426 6 N -0.334 5.334 7 C 0.017 3.983 8 H 0.110 0.890 9 C -0.219 4.219 10 C -0.166 4.166 11 C -0.153 4.153 12 C -0.166 4.166 13 C 0.041 3.959 14 H 0.104 0.896 15 C -0.186 4.186 16 N -0.256 5.256 17 C -0.115 4.115 18 C 0.049 3.951 19 C -0.558 4.558 20 H 0.046 0.954 21 C -0.192 4.192 22 N -0.592 5.592 23 Si 0.775 3.225 24 H -0.191 1.191 25 H -0.207 1.207 26 H -0.164 1.164 27 H 0.073 0.927 28 H 0.118 0.882 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.108 0.892 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.116 0.884 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.066 0.934 38 H 0.107 0.893 39 H 0.066 0.934 40 H 0.077 0.923 41 H 0.060 0.940 42 H 0.106 0.894 43 H 0.055 0.945 44 H 0.038 0.962 45 H 0.052 0.948 46 H 0.014 0.986 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.200 7.443 -25.978 27.966 hybrid contribution -0.697 0.041 1.190 1.380 sum -7.896 7.484 -24.788 27.070 Atomic orbital electron populations 1.22482 0.94070 1.03022 1.04102 1.21791 0.95402 0.98761 0.89490 0.87683 1.20587 0.78477 0.85155 0.84777 1.90644 1.42006 1.24103 1.85866 1.48281 1.61223 1.19276 1.04619 1.21758 0.93810 0.81642 1.01051 0.89001 1.22217 0.94663 1.03762 1.01286 1.22015 0.99275 0.99130 0.96224 1.21542 1.01502 0.95360 0.96858 1.21989 0.97991 0.96715 0.99915 1.21356 0.97843 0.91708 0.85024 0.89626 1.22042 1.00500 0.96579 0.99446 1.61780 1.59805 1.02696 1.01351 1.22446 0.96381 0.90287 1.02362 1.19963 0.93543 0.94187 0.87399 1.21267 1.26356 1.16304 0.91900 0.95373 1.25930 0.97754 1.00344 0.95160 1.70073 1.45082 1.43935 1.00109 0.85647 0.78806 0.79113 0.78973 1.19084 1.20689 1.16437 0.92728 0.88219 0.91872 0.92669 0.89160 0.91127 0.92952 0.88363 0.90550 0.90007 0.93398 0.89265 0.93363 0.92261 0.93996 0.89372 0.94458 0.96208 0.94844 0.98590 0.92414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.89 8.10 71.98 0.58 -4.30 16 2 C 0.06 1.94 1.91 44.17 0.08 2.02 16 3 H 0.11 3.29 6.97 -2.39 -0.02 3.27 16 4 C 0.52 16.94 6.74 87.66 0.59 17.53 16 5 O -0.55 -21.68 9.01 -3.06 -0.03 -21.70 16 6 N -0.60 -13.94 2.68 -770.53 -2.06 -16.00 16 7 C 0.12 1.96 2.37 45.12 0.11 2.06 16 8 H 0.09 1.59 4.93 -2.39 -0.01 1.58 16 9 C -0.16 -1.86 8.56 71.98 0.62 -1.24 16 10 C -0.13 -1.70 5.58 30.82 0.17 -1.53 16 11 C -0.12 -1.31 5.68 30.62 0.17 -1.13 16 12 C -0.13 -2.02 5.37 30.67 0.16 -1.85 16 13 C 0.14 2.90 3.07 44.97 0.14 3.04 16 14 H 0.09 1.44 7.48 -2.38 -0.02 1.42 16 15 C -0.13 -3.34 7.59 71.98 0.55 -2.80 16 16 N -0.53 -24.04 4.58 -906.06 -4.15 -28.19 16 17 C 0.03 1.48 8.58 127.69 1.10 2.58 16 18 C 0.18 8.64 3.24 85.56 0.28 8.92 16 19 C -0.52 -31.51 9.01 25.60 0.23 -31.28 16 20 H 0.03 1.95 7.37 -2.91 -0.02 1.92 16 21 C 0.00 0.29 5.47 84.65 0.46 0.76 16 22 N -0.95 -61.27 13.96 21.45 0.30 -60.97 16 23 Si 0.95 44.04 27.47 68.60 1.88 45.93 16 24 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 25 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 26 H -0.24 -10.06 6.54 99.48 0.65 -9.41 16 27 H 0.05 1.58 6.76 -2.39 -0.02 1.56 16 28 H 0.10 1.97 4.35 -2.39 -0.01 1.96 16 29 H 0.06 1.86 6.45 -2.38 -0.02 1.84 16 30 H 0.05 0.75 6.80 -2.39 -0.02 0.73 16 31 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.07 0.72 5.71 -2.39 -0.01 0.70 16 33 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.08 0.72 8.14 -2.39 -0.02 0.71 16 36 H 0.08 0.71 6.49 -2.39 -0.02 0.69 16 37 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 39 H 0.05 1.48 6.71 -2.39 -0.02 1.46 16 40 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.04 1.35 6.79 -2.38 -0.02 1.34 16 42 H 0.09 3.90 5.18 -2.39 -0.01 3.88 16 43 H 0.04 1.90 6.76 -2.39 -0.02 1.88 16 44 H 0.02 0.81 6.43 -2.38 -0.02 0.79 16 45 H 0.03 1.59 7.06 -2.38 -0.02 1.57 16 46 H 0.00 -0.16 6.22 -2.39 -0.01 -0.18 16 47 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 Total: -1.00 -74.84 333.48 2.08 -72.76 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 0.90 Total: 15.41 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: 5.24 Total: -7.23 kcal Atomic # 7 Polarization: -99.25 SS G_CDS: -5.91 Total: -105.16 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.03 Total: -21.70 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 1.88 Total: 45.93 kcal Total: -74.84 2.08 -72.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078637450.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.623 kcal (2) G-P(sol) polarization free energy of solvation -74.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds