Wall clock time and date at job start Tue Mar 31 2020 06:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47345 * 2 1 4 4 C 1.50694 * 109.47482 * 239.99751 * 2 1 3 5 5 O 1.21277 * 120.00325 * 254.12300 * 4 2 1 6 6 N 1.34779 * 120.00078 * 74.11851 * 4 2 1 7 7 C 1.46497 * 120.00215 * 180.02562 * 6 4 2 8 8 H 1.08998 * 109.47259 * 324.99825 * 7 6 4 9 9 C 1.52999 * 109.47266 * 85.00128 * 7 6 4 10 10 C 1.52998 * 109.47441 * 59.99962 * 9 7 6 11 11 C 1.53005 * 109.46884 * 59.99772 * 10 9 7 12 12 C 1.52999 * 109.47268 * 300.00334 * 11 10 9 13 13 C 1.52991 * 109.47173 * 59.99909 * 12 11 10 14 14 H 1.09006 * 109.47203 * 59.99860 * 13 12 11 15 15 C 1.52999 * 109.47173 * 180.02562 * 13 12 11 16 16 N 1.46901 * 109.46967 * 119.99867 * 2 1 3 17 17 C 1.46901 * 110.99976 * 284.19157 * 16 2 1 18 18 C 1.46897 * 111.00179 * 48.14610 * 16 2 1 19 19 C 1.50705 * 109.47030 * 169.99940 * 18 16 2 20 20 H 1.07999 * 120.00210 * 0.02562 * 19 18 16 21 21 C 1.37870 * 119.99699 * 179.97438 * 19 18 16 22 22 N 1.31519 * 120.00248 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00047 * 179.72503 * 21 19 18 24 24 H 1.48500 * 109.47062 * 59.99873 * 23 21 19 25 25 H 1.48498 * 109.47345 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47050 * 300.00163 * 23 21 19 27 27 H 1.08999 * 109.47235 * 60.00301 * 1 2 3 28 28 H 1.09000 * 109.47512 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47238 * 300.00390 * 1 2 3 30 30 H 0.97009 * 119.99595 * 0.02562 * 6 4 2 31 31 H 1.08996 * 109.47151 * 180.02562 * 9 7 6 32 32 H 1.09002 * 109.47114 * 299.99654 * 9 7 6 33 33 H 1.09006 * 109.47149 * 300.00271 * 10 9 7 34 34 H 1.08996 * 109.47718 * 180.02562 * 10 9 7 35 35 H 1.08998 * 109.46759 * 180.02562 * 11 10 9 36 36 H 1.08995 * 109.46570 * 60.00749 * 11 10 9 37 37 H 1.08996 * 109.47151 * 299.99632 * 12 11 10 38 38 H 1.09002 * 109.47114 * 180.02562 * 12 11 10 39 39 H 1.09005 * 109.46940 * 180.02562 * 15 13 12 40 40 H 1.08999 * 109.46825 * 299.99704 * 15 13 12 41 41 H 1.08994 * 109.47037 * 60.00256 * 15 13 12 42 42 H 1.09007 * 109.47316 * 189.53297 * 17 16 2 43 43 H 1.09003 * 109.47483 * 309.52710 * 17 16 2 44 44 H 1.08998 * 109.47611 * 69.52846 * 17 16 2 45 45 H 1.09002 * 109.46867 * 49.99849 * 18 16 2 46 46 H 1.08999 * 109.47181 * 290.00070 * 18 16 2 47 47 H 0.97005 * 120.00131 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.5054 -1.8232 -1.1374 6 7 1.9559 -0.1091 -2.4342 7 6 2.4438 -0.8000 -3.6303 8 1 3.3164 -1.4002 -3.3728 9 6 1.3427 -1.7099 -4.1786 10 6 0.1178 -0.8675 -4.5402 11 6 0.5036 0.1636 -5.6028 12 6 1.6047 1.0735 -5.0546 13 6 2.8295 0.2310 -4.6930 14 1 3.1926 -0.2830 -5.5830 15 6 3.9303 1.1409 -4.1442 16 7 2.0196 -0.6925 1.1995 17 6 1.8780 0.1548 2.3911 18 6 1.3324 -1.9778 1.3828 19 6 2.0215 -2.7658 2.4669 20 1 2.8835 -2.3529 2.9697 21 6 1.5509 -4.0133 2.8174 22 7 0.5009 -4.5160 2.2055 23 14 2.4097 -4.9934 4.1559 24 1 2.3780 -4.2276 5.4278 25 1 1.7142 -6.2922 4.3421 26 1 3.8200 -5.2398 3.7614 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.5778 0.7811 -2.5085 31 1 1.7059 -2.2242 -5.0683 32 1 1.0679 -2.4444 -3.4215 33 1 -0.2453 -0.3534 -3.6501 34 1 -0.6668 -1.5157 -4.9303 35 1 -0.3689 0.7640 -5.8601 36 1 0.8666 -0.3505 -6.4928 37 1 1.2417 1.5875 -4.1646 38 1 1.8792 1.8083 -5.8115 39 1 4.8032 0.5406 -3.8870 40 1 4.2053 1.8756 -4.9009 41 1 3.5670 1.6544 -3.2541 42 1 2.3979 -0.3081 3.2300 43 1 2.3099 1.1358 2.1929 44 1 0.8215 0.2655 2.6349 45 1 1.3607 -2.5412 0.4501 46 1 0.2956 -1.7981 1.6673 47 1 0.1695 -5.3936 2.4524 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078637483.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:02 Heat of formation + Delta-G solvation = -49.755169 kcal Electronic energy + Delta-G solvation = -23956.622231 eV Core-core repulsion = 20752.630570 eV Total energy + Delta-G solvation = -3203.991661 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.21506 -38.40008 -36.14692 -33.45928 -32.63177 -32.44487 -30.60857 -29.30718 -27.12598 -26.35268 -25.08019 -23.65053 -22.58345 -21.49194 -21.13411 -19.26667 -18.89933 -16.73871 -16.39537 -15.63062 -15.24540 -15.06863 -14.55536 -14.23116 -14.16798 -13.95451 -13.61429 -13.43865 -13.24101 -12.95291 -12.59536 -12.30053 -12.02044 -11.95867 -11.91371 -11.77105 -11.66165 -11.60920 -11.15404 -10.99717 -10.89080 -10.80696 -10.63197 -10.48063 -10.37535 -10.25759 -10.03092 -9.73649 -9.26763 -8.74091 -8.62372 -8.22767 -7.12472 -5.86560 -3.85162 3.30384 3.42719 3.46277 3.49368 3.51500 4.53279 4.55275 4.59989 4.66548 4.98372 5.07800 5.12231 5.21589 5.30946 5.38393 5.41422 5.49044 5.50725 5.51361 5.56256 5.59160 5.69894 5.73617 5.83860 5.92046 5.97691 6.00035 6.05015 6.11082 6.12144 6.19016 6.23966 6.32148 6.38404 6.39641 6.58197 6.75891 6.88187 7.45084 7.47628 7.88333 7.97203 8.30695 8.34993 8.68967 8.90665 9.20790 9.76305 11.24873 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023705 B = 0.004314 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.888455 B = 6488.562830 C = 6756.756439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.066 3.934 3 H 0.084 0.916 4 C 0.517 3.483 5 O -0.498 6.498 6 N -0.732 5.732 7 C 0.154 3.846 8 H 0.086 0.914 9 C -0.132 4.132 10 C -0.117 4.117 11 C -0.119 4.119 12 C -0.114 4.114 13 C -0.098 4.098 14 H 0.080 0.920 15 C -0.146 4.146 16 N -0.521 5.521 17 C 0.040 3.960 18 C 0.188 3.812 19 C -0.499 4.499 20 H 0.059 0.941 21 C 0.054 3.946 22 N -0.901 5.901 23 Si 0.895 3.105 24 H -0.279 1.279 25 H -0.289 1.289 26 H -0.277 1.277 27 H 0.051 0.949 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.391 0.609 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.056 0.944 40 H 0.052 0.948 41 H 0.057 0.943 42 H 0.074 0.926 43 H 0.042 0.958 44 H 0.015 0.985 45 H 0.055 0.945 46 H -0.012 1.012 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.085 14.131 -15.605 21.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.048 4.048 3 H 0.102 0.898 4 C 0.302 3.698 5 O -0.369 6.369 6 N -0.388 5.388 7 C 0.049 3.951 8 H 0.104 0.896 9 C -0.171 4.171 10 C -0.155 4.155 11 C -0.156 4.156 12 C -0.152 4.152 13 C -0.117 4.117 14 H 0.099 0.901 15 C -0.204 4.204 16 N -0.245 5.245 17 C -0.109 4.109 18 C 0.064 3.936 19 C -0.538 4.538 20 H 0.077 0.923 21 C -0.146 4.146 22 N -0.541 5.541 23 Si 0.723 3.277 24 H -0.205 1.205 25 H -0.215 1.215 26 H -0.203 1.203 27 H 0.070 0.930 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.226 0.774 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.092 0.908 43 H 0.061 0.939 44 H 0.034 0.966 45 H 0.073 0.927 46 H 0.006 0.994 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.847 13.008 -15.571 20.308 hybrid contribution -0.714 -0.018 0.795 1.068 sum 0.134 12.991 -14.776 19.675 Atomic orbital electron populations 1.22357 0.96035 1.03788 1.01434 1.21555 0.93763 0.97517 0.91919 0.89787 1.20681 0.78485 0.86761 0.83873 1.90754 1.42073 1.18703 1.85394 1.46122 1.65696 1.20352 1.06630 1.20816 0.96958 0.92974 0.84325 0.89602 1.21927 0.95764 0.98311 1.01100 1.21485 0.97681 0.97591 0.98747 1.21548 0.98141 0.97467 0.98486 1.21590 0.95159 0.97725 1.00713 1.21408 0.95606 0.96423 0.98229 0.90147 1.21810 0.98312 0.99359 1.00896 1.62130 1.57554 1.05100 0.99743 1.22227 0.98784 0.95434 0.94445 1.19948 0.90992 0.83910 0.98766 1.21111 1.13182 1.01216 1.18249 0.92299 1.24936 0.95247 0.97516 0.96913 1.69956 1.24251 1.17754 1.42114 0.86610 0.79818 0.79155 0.82074 1.20453 1.21476 1.20260 0.93045 0.90748 0.91940 0.77430 0.91576 0.90952 0.91823 0.92261 0.92241 0.92095 0.92094 0.91930 0.92452 0.92861 0.92398 0.90755 0.93920 0.96604 0.92733 0.99386 0.93154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.91 8.33 37.16 0.31 -2.60 16 2 C 0.07 1.17 2.70 -68.87 -0.19 0.99 16 3 H 0.08 1.24 7.82 -51.93 -0.41 0.84 16 4 C 0.52 9.53 6.90 -10.99 -0.08 9.46 16 5 O -0.50 -11.92 13.99 5.56 0.08 -11.84 16 6 N -0.73 -9.73 3.54 -53.81 -0.19 -9.92 16 7 C 0.15 1.92 2.23 -67.93 -0.15 1.77 16 8 H 0.09 1.29 7.58 -51.93 -0.39 0.90 16 9 C -0.13 -1.65 5.60 -26.73 -0.15 -1.80 16 10 C -0.12 -1.23 5.77 -26.73 -0.15 -1.38 16 11 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 12 C -0.11 -0.90 5.03 -26.74 -0.13 -1.03 16 13 C -0.10 -0.89 2.51 -90.62 -0.23 -1.12 16 14 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 15 C -0.15 -1.31 9.03 37.16 0.34 -0.97 16 16 N -0.52 -11.74 4.45 -237.73 -1.06 -12.80 16 17 C 0.04 0.78 9.03 60.06 0.54 1.32 16 18 C 0.19 5.16 3.23 -4.98 -0.02 5.14 16 19 C -0.50 -14.87 8.59 -34.44 -0.30 -15.16 16 20 H 0.06 1.74 7.10 -52.49 -0.37 1.36 16 21 C 0.05 1.63 5.46 -17.82 -0.10 1.53 16 22 N -0.90 -28.10 13.29 55.43 0.74 -27.37 16 23 Si 0.90 22.78 29.54 -169.99 -5.02 17.76 16 24 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 1.48 6.53 -51.93 -0.34 1.14 16 29 H 0.06 0.99 7.14 -51.93 -0.37 0.62 16 30 H 0.39 4.15 6.65 -40.82 -0.27 3.88 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.06 0.71 7.60 -51.93 -0.39 0.32 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.47 6.51 -51.93 -0.34 0.13 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.54 7.44 -51.93 -0.39 0.15 16 42 H 0.07 1.56 7.02 -51.93 -0.36 1.19 16 43 H 0.04 0.68 7.87 -51.93 -0.41 0.27 16 44 H 0.02 0.30 7.18 -51.93 -0.37 -0.07 16 45 H 0.05 1.67 5.88 -51.93 -0.31 1.36 16 46 H -0.01 -0.33 6.79 -51.93 -0.35 -0.68 16 47 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 355.31 15.07 5.35 5.35 Total: -1.00 -34.10 355.31 -9.00 -43.10 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -8.44 Total: 0.73 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -0.46 Total: -5.01 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: -0.51 Total: -50.09 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.08 Total: -11.84 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.10 -9.00 -43.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078637483.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.659 kcal (2) G-P(sol) polarization free energy of solvation -34.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds