Wall clock time and date at job start Tue Mar 31 2020 06:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47345 * 2 1 4 4 C 1.50694 * 109.47482 * 239.99751 * 2 1 3 5 5 O 1.21277 * 120.00325 * 254.12300 * 4 2 1 6 6 N 1.34779 * 120.00078 * 74.11851 * 4 2 1 7 7 C 1.46497 * 120.00215 * 180.02562 * 6 4 2 8 8 H 1.08998 * 109.47259 * 324.99825 * 7 6 4 9 9 C 1.52999 * 109.47266 * 85.00128 * 7 6 4 10 10 C 1.52998 * 109.47441 * 59.99962 * 9 7 6 11 11 C 1.53005 * 109.46884 * 59.99772 * 10 9 7 12 12 C 1.52999 * 109.47268 * 300.00334 * 11 10 9 13 13 C 1.52991 * 109.47173 * 59.99909 * 12 11 10 14 14 H 1.09006 * 109.47203 * 59.99860 * 13 12 11 15 15 C 1.52999 * 109.47173 * 180.02562 * 13 12 11 16 16 N 1.46901 * 109.46967 * 119.99867 * 2 1 3 17 17 C 1.46901 * 110.99976 * 284.19157 * 16 2 1 18 18 C 1.46897 * 111.00179 * 48.14610 * 16 2 1 19 19 C 1.50705 * 109.47030 * 169.99940 * 18 16 2 20 20 H 1.07999 * 120.00210 * 0.02562 * 19 18 16 21 21 C 1.37870 * 119.99699 * 179.97438 * 19 18 16 22 22 N 1.31519 * 120.00248 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00047 * 179.72503 * 21 19 18 24 24 H 1.48500 * 109.47062 * 59.99873 * 23 21 19 25 25 H 1.48498 * 109.47345 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47050 * 300.00163 * 23 21 19 27 27 H 1.08999 * 109.47235 * 60.00301 * 1 2 3 28 28 H 1.09000 * 109.47512 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47238 * 300.00390 * 1 2 3 30 30 H 0.97009 * 119.99595 * 0.02562 * 6 4 2 31 31 H 1.08996 * 109.47151 * 180.02562 * 9 7 6 32 32 H 1.09002 * 109.47114 * 299.99654 * 9 7 6 33 33 H 1.09006 * 109.47149 * 300.00271 * 10 9 7 34 34 H 1.08996 * 109.47718 * 180.02562 * 10 9 7 35 35 H 1.08998 * 109.46759 * 180.02562 * 11 10 9 36 36 H 1.08995 * 109.46570 * 60.00749 * 11 10 9 37 37 H 1.08996 * 109.47151 * 299.99632 * 12 11 10 38 38 H 1.09002 * 109.47114 * 180.02562 * 12 11 10 39 39 H 1.09005 * 109.46940 * 180.02562 * 15 13 12 40 40 H 1.08999 * 109.46825 * 299.99704 * 15 13 12 41 41 H 1.08994 * 109.47037 * 60.00256 * 15 13 12 42 42 H 1.09007 * 109.47316 * 189.53297 * 17 16 2 43 43 H 1.09003 * 109.47483 * 309.52710 * 17 16 2 44 44 H 1.08998 * 109.47611 * 69.52846 * 17 16 2 45 45 H 1.09002 * 109.46867 * 49.99849 * 18 16 2 46 46 H 1.08999 * 109.47181 * 290.00070 * 18 16 2 47 47 H 0.97005 * 120.00131 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.5054 -1.8232 -1.1374 6 7 1.9559 -0.1091 -2.4342 7 6 2.4438 -0.8000 -3.6303 8 1 3.3164 -1.4002 -3.3728 9 6 1.3427 -1.7099 -4.1786 10 6 0.1178 -0.8675 -4.5402 11 6 0.5036 0.1636 -5.6028 12 6 1.6047 1.0735 -5.0546 13 6 2.8295 0.2310 -4.6930 14 1 3.1926 -0.2830 -5.5830 15 6 3.9303 1.1409 -4.1442 16 7 2.0196 -0.6925 1.1995 17 6 1.8780 0.1548 2.3911 18 6 1.3324 -1.9778 1.3828 19 6 2.0215 -2.7658 2.4669 20 1 2.8835 -2.3529 2.9697 21 6 1.5509 -4.0133 2.8174 22 7 0.5009 -4.5160 2.2055 23 14 2.4097 -4.9934 4.1559 24 1 2.3780 -4.2276 5.4278 25 1 1.7142 -6.2922 4.3421 26 1 3.8200 -5.2398 3.7614 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.5778 0.7811 -2.5085 31 1 1.7059 -2.2242 -5.0683 32 1 1.0679 -2.4444 -3.4215 33 1 -0.2453 -0.3534 -3.6501 34 1 -0.6668 -1.5157 -4.9303 35 1 -0.3689 0.7640 -5.8601 36 1 0.8666 -0.3505 -6.4928 37 1 1.2417 1.5875 -4.1646 38 1 1.8792 1.8083 -5.8115 39 1 4.8032 0.5406 -3.8870 40 1 4.2053 1.8756 -4.9009 41 1 3.5670 1.6544 -3.2541 42 1 2.3979 -0.3081 3.2300 43 1 2.3099 1.1358 2.1929 44 1 0.8215 0.2655 2.6349 45 1 1.3607 -2.5412 0.4501 46 1 0.2956 -1.7981 1.6673 47 1 0.1695 -5.3936 2.4524 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078637483.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:01 Heat of formation + Delta-G solvation = -73.389216 kcal Electronic energy + Delta-G solvation = -23957.647080 eV Core-core repulsion = 20752.630570 eV Total energy + Delta-G solvation = -3205.016510 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.45298 -39.66017 -37.77777 -34.85725 -34.53535 -33.43554 -31.98847 -30.46131 -29.19627 -27.20187 -26.67078 -25.41600 -23.66517 -22.69584 -22.25780 -20.73749 -19.94866 -18.60617 -18.12484 -16.92473 -16.62762 -16.31028 -16.07595 -15.72503 -15.42272 -15.31227 -14.96576 -14.69312 -14.39761 -14.25749 -13.98927 -13.76041 -13.50679 -13.22342 -13.06349 -12.96472 -12.83263 -12.77713 -12.69354 -12.52717 -12.37491 -12.30549 -12.18939 -11.79058 -11.74892 -11.37936 -11.33164 -11.20547 -10.89786 -10.63048 -10.35098 -9.88513 -8.91553 -8.16318 -6.24385 1.36649 1.42298 1.49284 1.84042 2.24684 2.41735 3.16167 3.44585 3.67920 3.83900 3.85992 3.94001 4.11608 4.17920 4.19892 4.25460 4.50474 4.54060 4.57483 4.58945 4.65001 4.69641 4.72336 4.73806 4.85646 4.88523 5.00666 5.08830 5.09283 5.14388 5.16021 5.20141 5.30382 5.32361 5.35553 5.41206 5.45615 5.49373 5.56001 5.65646 5.74121 6.12858 6.42973 6.57382 6.81424 6.91349 7.42977 7.52657 8.95029 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023705 B = 0.004314 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.888455 B = 6488.562830 C = 6756.756439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.062 3.938 3 H 0.131 0.869 4 C 0.513 3.487 5 O -0.565 6.565 6 N -0.706 5.706 7 C 0.152 3.848 8 H 0.051 0.949 9 C -0.131 4.131 10 C -0.115 4.115 11 C -0.113 4.113 12 C -0.111 4.111 13 C -0.088 4.088 14 H 0.091 0.909 15 C -0.145 4.145 16 N -0.541 5.541 17 C 0.042 3.958 18 C 0.214 3.786 19 C -0.521 4.521 20 H 0.057 0.943 21 C -0.003 4.003 22 N -0.937 5.937 23 Si 0.968 3.032 24 H -0.262 1.262 25 H -0.281 1.281 26 H -0.275 1.275 27 H 0.092 0.908 28 H 0.027 0.973 29 H 0.071 0.929 30 H 0.410 0.590 31 H 0.079 0.921 32 H 0.023 0.977 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.086 0.914 39 H 0.040 0.960 40 H 0.075 0.925 41 H 0.055 0.945 42 H 0.053 0.947 43 H 0.087 0.913 44 H 0.017 0.983 45 H 0.013 0.987 46 H -0.035 1.035 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.333 17.091 -16.591 23.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.051 4.051 3 H 0.148 0.852 4 C 0.300 3.700 5 O -0.441 6.441 6 N -0.361 5.361 7 C 0.047 3.953 8 H 0.070 0.930 9 C -0.169 4.169 10 C -0.152 4.152 11 C -0.150 4.150 12 C -0.148 4.148 13 C -0.107 4.107 14 H 0.109 0.891 15 C -0.203 4.203 16 N -0.265 5.265 17 C -0.106 4.106 18 C 0.088 3.912 19 C -0.560 4.560 20 H 0.075 0.925 21 C -0.200 4.200 22 N -0.578 5.578 23 Si 0.792 3.208 24 H -0.186 1.186 25 H -0.207 1.207 26 H -0.200 1.200 27 H 0.111 0.889 28 H 0.046 0.954 29 H 0.090 0.910 30 H 0.248 0.752 31 H 0.097 0.903 32 H 0.042 0.958 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.104 0.896 39 H 0.059 0.941 40 H 0.094 0.906 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.106 0.894 44 H 0.036 0.964 45 H 0.031 0.969 46 H -0.018 1.018 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.081 16.047 -16.589 23.106 hybrid contribution -0.791 -0.898 1.012 1.568 sum 0.290 15.148 -15.577 21.730 Atomic orbital electron populations 1.22241 0.94797 1.01512 1.03941 1.21766 0.94741 0.98891 0.89660 0.85185 1.20950 0.77676 0.85982 0.85433 1.90734 1.45399 1.21555 1.86439 1.45871 1.64075 1.20678 1.05492 1.20901 0.95618 0.93931 0.84839 0.93033 1.21883 0.97049 0.97861 1.00134 1.21471 0.96366 0.97952 0.99445 1.21521 0.99017 0.96882 0.97609 1.21606 0.93918 0.97656 1.01667 1.21367 0.96656 0.95664 0.96984 0.89079 1.21808 0.97478 0.99435 1.01551 1.61899 1.57652 1.04500 1.02448 1.22242 0.99036 0.96630 0.92683 1.19393 0.89869 0.86111 0.95865 1.21511 1.13312 1.02128 1.19008 0.92504 1.25910 0.95912 0.98672 0.99483 1.70107 1.25777 1.18207 1.43736 0.85473 0.78372 0.77673 0.79290 1.18621 1.20671 1.19998 0.88905 0.95366 0.90959 0.75231 0.90252 0.95777 0.92604 0.92281 0.90592 0.91324 0.91582 0.89551 0.94080 0.90563 0.92557 0.92838 0.89417 0.96426 0.96851 1.01755 0.92994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.35 8.33 71.98 0.60 -4.75 16 2 C 0.06 2.16 2.70 44.17 0.12 2.28 16 3 H 0.13 3.36 7.82 -2.39 -0.02 3.35 16 4 C 0.51 19.48 6.90 87.65 0.60 20.08 16 5 O -0.56 -29.03 13.99 -3.02 -0.04 -29.07 16 6 N -0.71 -18.44 3.54 -442.55 -1.57 -20.01 16 7 C 0.15 3.83 2.23 44.99 0.10 3.93 16 8 H 0.05 1.67 7.58 -2.39 -0.02 1.65 16 9 C -0.13 -3.38 5.60 30.59 0.17 -3.21 16 10 C -0.11 -2.29 5.77 30.60 0.18 -2.11 16 11 C -0.11 -1.50 5.92 30.60 0.18 -1.32 16 12 C -0.11 -1.31 5.03 30.59 0.15 -1.16 16 13 C -0.09 -1.41 2.51 -10.80 -0.03 -1.43 16 14 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 15 C -0.15 -2.24 9.03 71.98 0.65 -1.59 16 16 N -0.54 -24.75 4.45 -906.04 -4.03 -28.78 16 17 C 0.04 1.60 9.03 127.69 1.15 2.75 16 18 C 0.21 12.34 3.23 85.56 0.28 12.62 16 19 C -0.52 -32.25 8.59 25.60 0.22 -32.03 16 20 H 0.06 3.45 7.10 -2.91 -0.02 3.43 16 21 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 22 N -0.94 -60.84 13.29 21.45 0.28 -60.56 16 23 Si 0.97 47.72 29.54 68.60 2.03 49.75 16 24 H -0.26 -12.10 7.11 99.48 0.71 -11.40 16 25 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 26 H -0.27 -13.36 7.11 99.48 0.71 -12.65 16 27 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.03 1.16 6.53 -2.39 -0.02 1.14 16 29 H 0.07 2.18 7.14 -2.38 -0.02 2.17 16 30 H 0.41 7.64 6.65 -92.70 -0.62 7.03 16 31 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.06 1.18 7.60 -2.38 -0.02 1.17 16 34 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.07 0.73 6.51 -2.39 -0.02 0.72 16 38 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.04 0.77 8.14 -2.38 -0.02 0.75 16 40 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.06 0.88 7.44 -2.39 -0.02 0.86 16 42 H 0.05 2.24 7.02 -2.38 -0.02 2.22 16 43 H 0.09 2.54 7.87 -2.39 -0.02 2.52 16 44 H 0.02 0.65 7.18 -2.39 -0.02 0.64 16 45 H 0.01 0.89 5.88 -2.39 -0.01 0.87 16 46 H -0.04 -2.13 6.79 -2.39 -0.02 -2.15 16 47 H 0.26 15.95 8.31 -92.70 -0.77 15.18 16 Total: -1.00 -81.00 355.31 1.83 -79.18 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: 0.31 Total: 15.15 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: 4.84 Total: -5.66 kcal Atomic # 7 Polarization: -104.04 SS G_CDS: -5.31 Total: -109.35 kcal Atomic # 8 Polarization: -29.03 SS G_CDS: -0.04 Total: -29.07 kcal Atomic # 14 Polarization: 47.72 SS G_CDS: 2.03 Total: 49.75 kcal Total: -81.00 1.83 -79.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078637483.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.787 kcal (2) G-P(sol) polarization free energy of solvation -81.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds