Wall clock time and date at job start Tue Mar 31 2020 06:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47247 * 2 1 4 4 C 1.50705 * 109.46841 * 240.00546 * 2 1 3 5 5 O 1.21280 * 119.99742 * 249.50613 * 4 2 1 6 6 N 1.34775 * 119.99992 * 69.78258 * 4 2 1 7 7 C 1.46500 * 119.99716 * 179.72372 * 6 4 2 8 8 H 1.08997 * 109.47354 * 35.00115 * 7 6 4 9 9 C 1.53001 * 109.47321 * 274.99944 * 7 6 4 10 10 C 1.52998 * 109.47276 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47151 * 60.00301 * 10 9 7 12 12 C 1.53001 * 109.46784 * 300.00000 * 11 10 9 13 13 C 1.52998 * 109.47276 * 60.00076 * 12 11 10 14 14 H 1.08997 * 109.47150 * 59.99981 * 13 12 11 15 15 C 1.53001 * 109.46943 * 179.97438 * 13 12 11 16 16 N 1.46894 * 109.47485 * 120.00641 * 2 1 3 17 17 C 1.46907 * 110.99997 * 287.14583 * 16 2 1 18 18 C 1.46903 * 111.00092 * 51.10106 * 16 2 1 19 19 C 1.50703 * 109.46966 * 170.00172 * 18 16 2 20 20 H 1.08000 * 120.00198 * 0.02562 * 19 18 16 21 21 C 1.37881 * 119.99979 * 179.97438 * 19 18 16 22 22 N 1.31511 * 119.99720 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00008 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47094 * 60.00415 * 23 21 19 25 25 H 1.48502 * 109.46740 * 179.97438 * 23 21 19 26 26 H 1.48490 * 109.47151 * 299.99992 * 23 21 19 27 27 H 1.09001 * 109.46831 * 299.99141 * 1 2 3 28 28 H 1.08990 * 109.47130 * 59.99561 * 1 2 3 29 29 H 1.08996 * 109.46908 * 179.97438 * 1 2 3 30 30 H 0.97000 * 119.99920 * 359.72688 * 6 4 2 31 31 H 1.09003 * 109.47469 * 300.00341 * 9 7 6 32 32 H 1.08996 * 109.46836 * 60.00436 * 9 7 6 33 33 H 1.08997 * 109.47150 * 300.00019 * 10 9 7 34 34 H 1.09000 * 109.47195 * 180.02562 * 10 9 7 35 35 H 1.08996 * 109.47120 * 180.02562 * 11 10 9 36 36 H 1.08997 * 109.47324 * 59.99824 * 11 10 9 37 37 H 1.09003 * 109.47469 * 300.00012 * 12 11 10 38 38 H 1.09006 * 109.47202 * 180.02562 * 12 11 10 39 39 H 1.09010 * 109.46705 * 180.02562 * 15 13 12 40 40 H 1.08996 * 109.47150 * 299.99829 * 15 13 12 41 41 H 1.08997 * 109.47066 * 60.00110 * 15 13 12 42 42 H 1.09004 * 109.46741 * 66.08852 * 17 16 2 43 43 H 1.08996 * 109.47065 * 186.08157 * 17 16 2 44 44 H 1.08993 * 109.46668 * 306.08780 * 17 16 2 45 45 H 1.08999 * 109.47338 * 290.00136 * 18 16 2 46 46 H 1.09002 * 109.47324 * 50.00260 * 18 16 2 47 47 H 0.97001 * 119.99989 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.5811 -1.7869 -1.1277 6 7 1.8766 -0.1466 -2.4448 7 6 2.3703 -0.8343 -3.6404 8 1 2.2486 -1.9104 -3.5169 9 6 3.8516 -0.5083 -3.8412 10 6 4.3670 -1.2261 -5.0902 11 6 3.5721 -0.7592 -6.3113 12 6 2.0908 -1.0852 -6.1105 13 6 1.5753 -0.3675 -4.8615 14 1 1.6971 0.7087 -4.9846 15 6 0.0938 -0.6930 -4.6611 16 7 2.0198 -0.6926 1.1993 17 6 1.8141 0.1267 2.4012 18 6 1.3833 -2.0087 1.3440 19 6 2.0791 -2.7863 2.4313 20 1 2.9106 -2.3466 2.9621 21 6 1.6535 -4.0586 2.7493 22 7 0.6407 -4.5938 2.1033 23 14 2.5164 -5.0227 4.0966 24 1 2.4160 -4.2801 5.3786 25 1 1.8722 -6.3526 4.2437 26 1 3.9465 -5.2017 3.7389 27 1 -0.3633 0.5137 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.4377 0.7145 -2.5270 31 1 3.9734 0.5678 -3.9648 32 1 4.4179 -0.8406 -2.9712 33 1 4.2453 -2.3022 -4.9671 34 1 5.4225 -0.9942 -5.2330 35 1 3.9390 -1.2709 -7.2010 36 1 3.6938 0.3169 -6.4344 37 1 1.9689 -2.1614 -5.9874 38 1 1.5244 -0.7530 -6.9806 39 1 -0.2735 -0.1812 -3.7715 40 1 -0.4722 -0.3601 -5.5311 41 1 -0.0283 -1.7691 -4.5382 42 1 0.7457 0.2393 2.5857 43 1 2.2811 -0.3604 3.2572 44 1 2.2627 1.1088 2.2525 45 1 0.3334 -1.8778 1.6059 46 1 1.4578 -2.5538 0.4030 47 1 0.3415 -5.4890 2.3267 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078637489.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:05 Heat of formation + Delta-G solvation = -52.606424 kcal Electronic energy + Delta-G solvation = -23674.418512 eV Core-core repulsion = 20470.303212 eV Total energy + Delta-G solvation = -3204.115301 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.01989 -38.43114 -36.20140 -33.93368 -32.58525 -32.44792 -30.55064 -29.02870 -27.10591 -26.32061 -25.14735 -23.70228 -22.43662 -21.37898 -20.58266 -20.14529 -18.90459 -16.59323 -16.48381 -15.99893 -14.93324 -14.73722 -14.51888 -14.31764 -14.19669 -14.04017 -13.70712 -13.53383 -13.14772 -12.95085 -12.62597 -12.42272 -12.01485 -11.99524 -11.90843 -11.73805 -11.58229 -11.33162 -11.12985 -10.97405 -10.89164 -10.80158 -10.63981 -10.50804 -10.46751 -10.28771 -10.17010 -9.73474 -9.24968 -8.79250 -8.60394 -8.21611 -7.12381 -5.86629 -3.85091 3.28829 3.42687 3.45587 3.46131 3.50279 4.52664 4.55058 4.60994 4.75679 4.98574 5.05032 5.12708 5.22892 5.32025 5.36421 5.39452 5.45040 5.49508 5.54659 5.57184 5.63303 5.64497 5.79203 5.91020 5.93811 5.96795 6.02192 6.05848 6.08644 6.11513 6.13575 6.20742 6.33038 6.37938 6.41719 6.57029 6.76525 6.85334 7.45201 7.47857 7.87362 7.96689 8.30843 8.34825 8.68739 8.89485 9.20818 9.76218 11.24877 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020402 B = 0.004249 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.106522 B = 6588.272172 C = 7034.483906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.066 3.934 3 H 0.086 0.914 4 C 0.516 3.484 5 O -0.496 6.496 6 N -0.737 5.737 7 C 0.153 3.847 8 H 0.086 0.914 9 C -0.129 4.129 10 C -0.118 4.118 11 C -0.120 4.120 12 C -0.112 4.112 13 C -0.096 4.096 14 H 0.071 0.929 15 C -0.148 4.148 16 N -0.521 5.521 17 C 0.038 3.962 18 C 0.187 3.813 19 C -0.499 4.499 20 H 0.059 0.941 21 C 0.054 3.946 22 N -0.901 5.901 23 Si 0.895 3.105 24 H -0.279 1.279 25 H -0.289 1.289 26 H -0.277 1.277 27 H 0.062 0.938 28 H 0.051 0.949 29 H 0.072 0.928 30 H 0.392 0.608 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.053 0.947 41 H 0.057 0.943 42 H 0.015 0.985 43 H 0.075 0.925 44 H 0.043 0.957 45 H -0.012 1.012 46 H 0.056 0.944 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.568 12.804 -16.155 20.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.048 4.048 3 H 0.104 0.896 4 C 0.302 3.698 5 O -0.367 6.367 6 N -0.391 5.391 7 C 0.048 3.952 8 H 0.104 0.896 9 C -0.168 4.168 10 C -0.156 4.156 11 C -0.157 4.157 12 C -0.150 4.150 13 C -0.115 4.115 14 H 0.090 0.910 15 C -0.205 4.205 16 N -0.245 5.245 17 C -0.110 4.110 18 C 0.062 3.938 19 C -0.537 4.537 20 H 0.077 0.923 21 C -0.146 4.146 22 N -0.541 5.541 23 Si 0.723 3.277 24 H -0.205 1.205 25 H -0.215 1.215 26 H -0.203 1.203 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.225 0.775 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.033 0.967 43 H 0.094 0.906 44 H 0.061 0.939 45 H 0.006 0.994 46 H 0.074 0.926 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.383 11.720 -16.095 19.959 hybrid contribution -0.704 -0.005 0.803 1.068 sum 0.679 11.716 -15.292 19.276 Atomic orbital electron populations 1.22369 0.96176 1.03709 1.01518 1.21559 0.93677 0.97704 0.91815 0.89555 1.20680 0.79083 0.86146 0.83941 1.90760 1.39945 1.20463 1.85508 1.46096 1.62779 1.24077 1.06162 1.20881 0.92386 0.98352 0.83532 0.89554 1.21923 0.96283 1.00202 0.98379 1.21499 0.99138 1.00713 0.94226 1.21560 0.95176 1.01056 0.97936 1.21561 0.95765 1.00834 0.96802 1.21380 0.95300 1.00322 0.94518 0.91016 1.21828 0.94964 1.02274 1.01427 1.62145 1.58258 1.04720 0.99376 1.22235 0.98346 0.95910 0.94513 1.19962 0.91451 0.83286 0.99079 1.21111 1.15492 0.99446 1.17697 0.92282 1.24938 0.95308 0.97524 0.96851 1.69953 1.26647 1.15819 1.41659 0.86608 0.79900 0.79003 0.82142 1.20451 1.21472 1.20251 0.91884 0.92969 0.90868 0.77482 0.92198 0.91079 0.91670 0.91973 0.92082 0.92117 0.91594 0.91792 0.92353 0.92824 0.92396 0.96673 0.90606 0.93860 0.99447 0.92631 0.93153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.89 8.39 37.16 0.31 -2.58 16 2 C 0.07 1.17 2.71 -68.86 -0.19 0.99 16 3 H 0.09 1.28 7.93 -51.93 -0.41 0.87 16 4 C 0.52 9.63 6.85 -10.98 -0.08 9.55 16 5 O -0.50 -11.96 13.88 5.56 0.08 -11.88 16 6 N -0.74 -9.96 4.38 -53.80 -0.24 -10.20 16 7 C 0.15 1.95 1.90 -67.93 -0.13 1.82 16 8 H 0.09 1.38 7.58 -51.93 -0.39 0.98 16 9 C -0.13 -1.57 5.49 -26.73 -0.15 -1.71 16 10 C -0.12 -1.21 5.92 -26.73 -0.16 -1.37 16 11 C -0.12 -1.01 5.92 -26.73 -0.16 -1.17 16 12 C -0.11 -0.97 5.20 -26.73 -0.14 -1.11 16 13 C -0.10 -0.92 2.29 -90.62 -0.21 -1.13 16 14 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 15 C -0.15 -1.44 9.04 37.16 0.34 -1.10 16 16 N -0.52 -11.78 4.46 -237.72 -1.06 -12.84 16 17 C 0.04 0.75 9.05 60.07 0.54 1.30 16 18 C 0.19 5.13 3.33 -4.97 -0.02 5.11 16 19 C -0.50 -14.89 8.54 -34.44 -0.29 -15.18 16 20 H 0.06 1.74 7.10 -52.49 -0.37 1.37 16 21 C 0.05 1.63 5.46 -17.82 -0.10 1.53 16 22 N -0.90 -28.14 13.29 55.43 0.74 -27.40 16 23 Si 0.90 22.79 29.54 -169.99 -5.02 17.77 16 24 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 27 H 0.06 0.98 6.93 -51.93 -0.36 0.62 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 1.44 6.54 -51.93 -0.34 1.10 16 30 H 0.39 4.08 8.39 -40.82 -0.34 3.74 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.58 7.45 -51.92 -0.39 0.20 16 40 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.01 0.28 6.97 -51.93 -0.36 -0.08 16 43 H 0.08 1.60 6.92 -51.93 -0.36 1.24 16 44 H 0.04 0.70 7.98 -51.93 -0.41 0.28 16 45 H -0.01 -0.35 6.82 -51.93 -0.35 -0.70 16 46 H 0.06 1.70 5.74 -51.93 -0.30 1.41 16 47 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 359.32 15.07 5.41 5.41 Total: -1.00 -34.32 359.32 -9.11 -43.43 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -8.60 Total: 0.77 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -0.42 Total: -5.06 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: -0.56 Total: -50.44 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.08 Total: -11.88 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.32 -9.11 -43.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078637489.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.178 kcal (2) G-P(sol) polarization free energy of solvation -34.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds