Wall clock time and date at job start Tue Mar 31 2020 06:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47247 * 2 1 4 4 C 1.50705 * 109.46841 * 240.00546 * 2 1 3 5 5 O 1.21280 * 119.99742 * 249.50613 * 4 2 1 6 6 N 1.34775 * 119.99992 * 69.78258 * 4 2 1 7 7 C 1.46500 * 119.99716 * 179.72372 * 6 4 2 8 8 H 1.08997 * 109.47354 * 35.00115 * 7 6 4 9 9 C 1.53001 * 109.47321 * 274.99944 * 7 6 4 10 10 C 1.52998 * 109.47276 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47151 * 60.00301 * 10 9 7 12 12 C 1.53001 * 109.46784 * 300.00000 * 11 10 9 13 13 C 1.52998 * 109.47276 * 60.00076 * 12 11 10 14 14 H 1.08997 * 109.47150 * 59.99981 * 13 12 11 15 15 C 1.53001 * 109.46943 * 179.97438 * 13 12 11 16 16 N 1.46894 * 109.47485 * 120.00641 * 2 1 3 17 17 C 1.46907 * 110.99997 * 287.14583 * 16 2 1 18 18 C 1.46903 * 111.00092 * 51.10106 * 16 2 1 19 19 C 1.50703 * 109.46966 * 170.00172 * 18 16 2 20 20 H 1.08000 * 120.00198 * 0.02562 * 19 18 16 21 21 C 1.37881 * 119.99979 * 179.97438 * 19 18 16 22 22 N 1.31511 * 119.99720 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00008 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47094 * 60.00415 * 23 21 19 25 25 H 1.48502 * 109.46740 * 179.97438 * 23 21 19 26 26 H 1.48490 * 109.47151 * 299.99992 * 23 21 19 27 27 H 1.09001 * 109.46831 * 299.99141 * 1 2 3 28 28 H 1.08990 * 109.47130 * 59.99561 * 1 2 3 29 29 H 1.08996 * 109.46908 * 179.97438 * 1 2 3 30 30 H 0.97000 * 119.99920 * 359.72688 * 6 4 2 31 31 H 1.09003 * 109.47469 * 300.00341 * 9 7 6 32 32 H 1.08996 * 109.46836 * 60.00436 * 9 7 6 33 33 H 1.08997 * 109.47150 * 300.00019 * 10 9 7 34 34 H 1.09000 * 109.47195 * 180.02562 * 10 9 7 35 35 H 1.08996 * 109.47120 * 180.02562 * 11 10 9 36 36 H 1.08997 * 109.47324 * 59.99824 * 11 10 9 37 37 H 1.09003 * 109.47469 * 300.00012 * 12 11 10 38 38 H 1.09006 * 109.47202 * 180.02562 * 12 11 10 39 39 H 1.09010 * 109.46705 * 180.02562 * 15 13 12 40 40 H 1.08996 * 109.47150 * 299.99829 * 15 13 12 41 41 H 1.08997 * 109.47066 * 60.00110 * 15 13 12 42 42 H 1.09004 * 109.46741 * 66.08852 * 17 16 2 43 43 H 1.08996 * 109.47065 * 186.08157 * 17 16 2 44 44 H 1.08993 * 109.46668 * 306.08780 * 17 16 2 45 45 H 1.08999 * 109.47338 * 290.00136 * 18 16 2 46 46 H 1.09002 * 109.47324 * 50.00260 * 18 16 2 47 47 H 0.97001 * 119.99989 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.5811 -1.7869 -1.1277 6 7 1.8766 -0.1466 -2.4448 7 6 2.3703 -0.8343 -3.6404 8 1 2.2486 -1.9104 -3.5169 9 6 3.8516 -0.5083 -3.8412 10 6 4.3670 -1.2261 -5.0902 11 6 3.5721 -0.7592 -6.3113 12 6 2.0908 -1.0852 -6.1105 13 6 1.5753 -0.3675 -4.8615 14 1 1.6971 0.7087 -4.9846 15 6 0.0938 -0.6930 -4.6611 16 7 2.0198 -0.6926 1.1993 17 6 1.8141 0.1267 2.4012 18 6 1.3833 -2.0087 1.3440 19 6 2.0791 -2.7863 2.4313 20 1 2.9106 -2.3466 2.9621 21 6 1.6535 -4.0586 2.7493 22 7 0.6407 -4.5938 2.1033 23 14 2.5164 -5.0227 4.0966 24 1 2.4160 -4.2801 5.3786 25 1 1.8722 -6.3526 4.2437 26 1 3.9465 -5.2017 3.7389 27 1 -0.3633 0.5137 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.4377 0.7145 -2.5270 31 1 3.9734 0.5678 -3.9648 32 1 4.4179 -0.8406 -2.9712 33 1 4.2453 -2.3022 -4.9671 34 1 5.4225 -0.9942 -5.2330 35 1 3.9390 -1.2709 -7.2010 36 1 3.6938 0.3169 -6.4344 37 1 1.9689 -2.1614 -5.9874 38 1 1.5244 -0.7530 -6.9806 39 1 -0.2735 -0.1812 -3.7715 40 1 -0.4722 -0.3601 -5.5311 41 1 -0.0283 -1.7691 -4.5382 42 1 0.7457 0.2393 2.5857 43 1 2.2811 -0.3604 3.2572 44 1 2.2627 1.1088 2.2525 45 1 0.3334 -1.8778 1.6059 46 1 1.4578 -2.5538 0.4030 47 1 0.3415 -5.4890 2.3267 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078637489.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:04 Heat of formation + Delta-G solvation = -76.946064 kcal Electronic energy + Delta-G solvation = -23675.473958 eV Core-core repulsion = 20470.303212 eV Total energy + Delta-G solvation = -3205.170747 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.32289 -39.62079 -37.82130 -35.20043 -34.71907 -33.39216 -32.00617 -30.14220 -29.16794 -27.21912 -26.73182 -25.41448 -23.71652 -22.38194 -21.96962 -21.20288 -20.24299 -18.61593 -17.96927 -17.37665 -16.61277 -16.08552 -15.98836 -15.52012 -15.40220 -15.25700 -15.13198 -14.83244 -14.45170 -14.24870 -13.99453 -13.81920 -13.48227 -13.35728 -13.13909 -12.96345 -12.82267 -12.76369 -12.65884 -12.45817 -12.29809 -12.19324 -12.10862 -11.80490 -11.77934 -11.42935 -11.34903 -11.32119 -11.11162 -10.61542 -10.34335 -9.88543 -8.91090 -8.16615 -6.24492 1.36392 1.41965 1.49035 1.82389 2.21152 2.41377 3.15854 3.43158 3.64360 3.78890 3.88042 3.99610 4.13272 4.17748 4.18389 4.26917 4.47040 4.49838 4.54351 4.58016 4.60156 4.64259 4.72159 4.79237 4.85416 4.87791 5.01031 5.08400 5.09174 5.14395 5.16124 5.18567 5.27961 5.28860 5.32412 5.37826 5.42784 5.47280 5.55692 5.65261 5.71861 6.12889 6.43014 6.56997 6.81355 6.91174 7.42662 7.51384 8.94806 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020402 B = 0.004249 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.106522 B = 6588.272172 C = 7034.483906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.062 3.938 3 H 0.132 0.868 4 C 0.512 3.488 5 O -0.563 6.563 6 N -0.712 5.712 7 C 0.151 3.849 8 H 0.042 0.958 9 C -0.124 4.124 10 C -0.118 4.118 11 C -0.113 4.113 12 C -0.112 4.112 13 C -0.086 4.086 14 H 0.100 0.900 15 C -0.148 4.148 16 N -0.542 5.542 17 C 0.041 3.959 18 C 0.212 3.788 19 C -0.521 4.521 20 H 0.057 0.943 21 C -0.003 4.003 22 N -0.937 5.937 23 Si 0.968 3.032 24 H -0.262 1.262 25 H -0.281 1.281 26 H -0.275 1.275 27 H 0.073 0.927 28 H 0.095 0.905 29 H 0.027 0.973 30 H 0.413 0.587 31 H 0.083 0.917 32 H 0.030 0.970 33 H 0.043 0.957 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.048 0.952 38 H 0.088 0.912 39 H 0.056 0.944 40 H 0.077 0.923 41 H 0.032 0.968 42 H 0.019 0.981 43 H 0.053 0.947 44 H 0.086 0.914 45 H -0.036 1.036 46 H 0.015 0.985 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.704 15.730 -17.264 23.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.050 4.050 3 H 0.150 0.850 4 C 0.298 3.702 5 O -0.440 6.440 6 N -0.366 5.366 7 C 0.046 3.954 8 H 0.060 0.940 9 C -0.162 4.162 10 C -0.156 4.156 11 C -0.150 4.150 12 C -0.150 4.150 13 C -0.105 4.105 14 H 0.118 0.882 15 C -0.205 4.205 16 N -0.266 5.266 17 C -0.107 4.107 18 C 0.086 3.914 19 C -0.560 4.560 20 H 0.075 0.925 21 C -0.200 4.200 22 N -0.578 5.578 23 Si 0.792 3.208 24 H -0.186 1.186 25 H -0.206 1.206 26 H -0.200 1.200 27 H 0.092 0.908 28 H 0.114 0.886 29 H 0.046 0.954 30 H 0.250 0.750 31 H 0.102 0.898 32 H 0.049 0.951 33 H 0.062 0.938 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.067 0.933 38 H 0.106 0.894 39 H 0.075 0.925 40 H 0.096 0.904 41 H 0.052 0.948 42 H 0.038 0.962 43 H 0.072 0.928 44 H 0.105 0.895 45 H -0.018 1.018 46 H 0.033 0.967 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.500 14.722 -17.236 22.717 hybrid contribution -0.750 -0.857 1.072 1.564 sum 0.750 13.865 -16.164 21.309 Atomic orbital electron populations 1.22260 0.94680 1.01532 1.04170 1.21772 0.94838 0.98965 0.89462 0.85046 1.20984 0.78246 0.85370 0.85567 1.90740 1.43291 1.23389 1.86559 1.45862 1.61363 1.24420 1.04976 1.20967 0.93815 0.96050 0.84522 0.93976 1.21855 0.95028 1.01624 0.97718 1.21510 1.00247 0.99323 0.94513 1.21535 0.94293 1.02233 0.96982 1.21591 0.96480 0.99820 0.97097 1.21359 0.94389 1.01840 0.92875 0.88205 1.21842 0.95472 1.00739 1.02471 1.61918 1.58617 1.03868 1.02163 1.22246 0.98846 0.97028 0.92570 1.19411 0.90142 0.85713 0.96172 1.21514 1.15638 1.00364 1.18461 0.92512 1.25913 0.95993 0.98637 0.99450 1.70102 1.28156 1.16250 1.43319 0.85471 0.78433 0.77589 0.79317 1.18624 1.20640 1.19995 0.90847 0.88616 0.95395 0.75001 0.89835 0.95068 0.93766 0.90919 0.90812 0.90259 0.93331 0.89376 0.92528 0.90411 0.94846 0.96225 0.92847 0.89495 1.01821 0.96680 0.92988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.27 8.39 71.98 0.60 -4.67 16 2 C 0.06 2.16 2.71 44.17 0.12 2.28 16 3 H 0.13 3.42 7.93 -2.39 -0.02 3.40 16 4 C 0.51 19.58 6.85 87.66 0.60 20.18 16 5 O -0.56 -29.21 13.88 -3.03 -0.04 -29.26 16 6 N -0.71 -18.79 4.38 -442.53 -1.94 -20.73 16 7 C 0.15 3.89 1.90 44.99 0.09 3.97 16 8 H 0.04 1.47 7.58 -2.39 -0.02 1.46 16 9 C -0.12 -2.99 5.49 30.59 0.17 -2.82 16 10 C -0.12 -2.38 5.92 30.59 0.18 -2.20 16 11 C -0.11 -1.62 5.92 30.60 0.18 -1.43 16 12 C -0.11 -1.72 5.20 30.59 0.16 -1.56 16 13 C -0.09 -1.46 2.29 -10.79 -0.02 -1.48 16 14 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 15 C -0.15 -2.65 9.04 71.98 0.65 -2.00 16 16 N -0.54 -24.86 4.46 -906.02 -4.04 -28.90 16 17 C 0.04 1.57 9.05 127.69 1.16 2.72 16 18 C 0.21 12.25 3.33 85.56 0.29 12.53 16 19 C -0.52 -32.34 8.54 25.60 0.22 -32.12 16 20 H 0.06 3.45 7.10 -2.91 -0.02 3.43 16 21 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 22 N -0.94 -60.90 13.29 21.45 0.28 -60.62 16 23 Si 0.97 47.79 29.54 68.60 2.03 49.82 16 24 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 25 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 26 H -0.27 -13.37 7.11 99.48 0.71 -12.67 16 27 H 0.07 2.16 6.93 -2.39 -0.02 2.14 16 28 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.03 1.12 6.54 -2.39 -0.02 1.11 16 30 H 0.41 7.37 8.39 -92.71 -0.78 6.60 16 31 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 39 H 0.06 1.01 7.45 -2.38 -0.02 1.00 16 40 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.02 0.72 6.97 -2.38 -0.02 0.70 16 43 H 0.05 2.26 6.92 -2.39 -0.02 2.24 16 44 H 0.09 2.55 7.98 -2.39 -0.02 2.53 16 45 H -0.04 -2.17 6.82 -2.39 -0.02 -2.19 16 46 H 0.02 1.00 5.74 -2.39 -0.01 0.99 16 47 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 Total: -1.00 -81.88 359.32 1.28 -80.60 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: 0.15 Total: 15.38 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: 4.85 Total: -6.30 kcal Atomic # 7 Polarization: -104.55 SS G_CDS: -5.70 Total: -110.25 kcal Atomic # 8 Polarization: -29.21 SS G_CDS: -0.04 Total: -29.26 kcal Atomic # 14 Polarization: 47.79 SS G_CDS: 2.03 Total: 49.82 kcal Total: -81.88 1.28 -80.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078637489.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.655 kcal (2) G-P(sol) polarization free energy of solvation -81.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds