Wall clock time and date at job start Tue Mar 31 2020 06:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46847 * 2 1 4 4 C 1.50697 * 109.47205 * 240.00422 * 2 1 3 5 5 O 1.21275 * 120.00307 * 263.04498 * 4 2 1 6 6 N 1.34781 * 120.00198 * 83.03877 * 4 2 1 7 7 C 1.46921 * 120.63277 * 184.83348 * 6 4 2 8 8 C 1.53191 * 108.77548 * 126.37306 * 7 6 4 9 9 H 1.09005 * 109.49848 * 294.68175 * 8 7 6 10 10 C 1.52999 * 109.49833 * 174.58740 * 8 7 6 11 11 C 1.53038 * 109.31814 * 54.63166 * 8 7 6 12 12 C 1.53042 * 109.53681 * 298.63773 * 11 8 7 13 13 H 1.08997 * 109.49784 * 301.41212 * 12 11 8 14 14 C 1.53001 * 109.49537 * 181.30874 * 12 11 8 15 15 C 1.46926 * 120.62761 * 4.55423 * 6 4 2 16 16 N 1.46894 * 109.47058 * 120.00078 * 2 1 3 17 17 C 1.46900 * 110.99816 * 182.50081 * 16 2 1 18 18 C 1.46900 * 111.00418 * 306.45799 * 16 2 1 19 19 C 1.50703 * 109.47058 * 170.00171 * 18 16 2 20 20 H 1.07997 * 120.00153 * 359.97438 * 19 18 16 21 21 C 1.37876 * 119.99775 * 180.02562 * 19 18 16 22 22 N 1.31514 * 120.00106 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99946 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47571 * 89.99741 * 23 21 19 25 25 H 1.48504 * 109.47092 * 209.99849 * 23 21 19 26 26 H 1.48497 * 109.47085 * 329.99427 * 23 21 19 27 27 H 1.08998 * 109.47059 * 305.62645 * 1 2 3 28 28 H 1.08999 * 109.47056 * 65.63263 * 1 2 3 29 29 H 1.08998 * 109.46904 * 185.63216 * 1 2 3 30 30 H 1.09001 * 109.58454 * 246.15527 * 7 6 4 31 31 H 1.08994 * 109.58869 * 6.58538 * 7 6 4 32 32 H 1.09000 * 109.47403 * 59.99921 * 10 8 7 33 33 H 1.09000 * 109.47086 * 179.97438 * 10 8 7 34 34 H 1.08999 * 109.46937 * 299.99840 * 10 8 7 35 35 H 1.09003 * 109.45601 * 58.65359 * 11 8 7 36 36 H 1.08993 * 109.46366 * 178.61486 * 11 8 7 37 37 H 1.09001 * 109.46969 * 60.00721 * 14 12 11 38 38 H 1.09004 * 109.46853 * 179.97438 * 14 12 11 39 39 H 1.08991 * 109.47350 * 300.00308 * 14 12 11 40 40 H 1.09000 * 109.58923 * 353.41829 * 15 6 4 41 41 H 1.09000 * 109.58541 * 113.84263 * 15 6 4 42 42 H 1.08997 * 109.47367 * 64.13061 * 17 16 2 43 43 H 1.09000 * 109.47292 * 184.13299 * 17 16 2 44 44 H 1.09002 * 109.47093 * 304.12949 * 17 16 2 45 45 H 1.09001 * 109.46354 * 289.99849 * 18 16 2 46 46 H 1.08993 * 109.46763 * 49.99910 * 18 16 2 47 47 H 0.96999 * 120.00175 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.3545 -1.8778 -1.1677 6 7 2.1237 -0.0481 -2.4008 7 6 2.5103 -0.7521 -3.6311 8 6 1.4507 -0.4863 -4.7050 9 1 0.5044 -0.9338 -4.4010 10 6 1.9033 -1.0993 -6.0318 11 6 1.2701 1.0238 -4.8753 12 6 0.7858 1.6331 -3.5576 13 1 -0.1542 1.1656 -3.2644 14 6 0.5743 3.1377 -3.7379 15 6 1.8325 1.3903 -2.4717 16 7 2.0197 -0.6925 1.1994 17 6 3.4869 -0.6605 1.2636 18 6 1.4269 -0.1213 2.4161 19 6 1.7535 -1.0015 3.5949 20 1 2.3422 -1.8959 3.4543 21 6 1.2999 -0.6654 4.8528 22 7 0.5826 0.4236 5.0239 23 14 1.7053 -1.7559 6.3141 24 1 2.9822 -1.3088 6.9264 25 1 0.6155 -1.6630 7.3186 26 1 1.8405 -3.1631 5.8592 27 1 -0.3633 0.5986 0.8353 28 1 -0.3633 0.4240 -0.9361 29 1 -0.3633 -1.0227 0.1009 30 1 3.4778 -0.3847 -3.9736 31 1 2.5719 -1.8226 -3.4356 32 1 2.0345 -2.1744 -5.9094 33 1 1.1489 -0.9103 -6.7954 34 1 2.8489 -0.6502 -6.3357 35 1 2.2225 1.4741 -5.1552 36 1 0.5344 1.2158 -5.6562 37 1 -0.1724 3.3092 -4.5133 38 1 0.2289 3.5711 -2.7993 39 1 1.5150 3.6044 -4.0297 40 1 1.4470 1.7329 -1.5114 41 1 2.7435 1.9358 -2.7177 42 1 3.8236 0.3709 1.3684 43 1 3.8259 -1.2422 2.1208 44 1 3.9000 -1.0864 0.3492 45 1 1.8327 0.8763 2.5840 46 1 0.3452 -0.0585 2.2981 47 1 0.2638 0.6602 5.9089 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078647062.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:25 Heat of formation + Delta-G solvation = -41.651030 kcal Electronic energy + Delta-G solvation = -23701.475998 eV Core-core repulsion = 20497.835759 eV Total energy + Delta-G solvation = -3203.640239 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.36634 -38.11969 -36.19400 -34.02354 -33.50675 -32.56962 -30.56561 -27.53848 -26.95806 -26.92466 -25.69372 -24.40560 -23.31698 -21.09695 -20.79559 -19.98606 -18.40526 -17.13021 -16.45859 -15.79004 -15.35300 -15.00737 -14.90418 -14.58668 -14.43935 -13.90999 -13.69443 -13.24377 -13.06362 -12.98230 -12.70113 -12.41150 -12.30603 -12.16194 -12.07170 -11.87542 -11.66291 -11.56755 -11.11506 -11.06837 -11.00668 -10.89325 -10.79692 -10.72539 -10.61156 -10.49715 -10.40090 -9.89279 -9.22767 -9.05630 -8.50745 -8.38548 -7.18011 -6.00210 -4.00087 2.98193 3.08689 3.35083 3.40953 3.47216 4.38235 4.46048 4.54397 4.59037 4.72076 4.88129 4.95265 5.06820 5.15828 5.27937 5.31699 5.35839 5.37929 5.45307 5.46367 5.55192 5.60381 5.62089 5.65481 5.72911 5.81104 5.86551 5.94239 5.95950 6.01587 6.04551 6.20595 6.23481 6.31003 6.38047 6.62864 6.65214 6.83570 7.27212 7.32514 7.54702 7.84120 8.08521 8.21284 8.52001 8.61745 9.07718 9.63621 11.10845 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029874 B = 0.003852 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.046242 B = 7266.316896 C = 7827.172410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.068 3.932 3 H 0.047 0.953 4 C 0.523 3.477 5 O -0.517 6.517 6 N -0.621 5.621 7 C 0.118 3.882 8 C -0.108 4.108 9 H 0.074 0.926 10 C -0.144 4.144 11 C -0.107 4.107 12 C -0.109 4.109 13 H 0.076 0.924 14 C -0.145 4.145 15 C 0.109 3.891 16 N -0.518 5.518 17 C 0.038 3.962 18 C 0.189 3.811 19 C -0.504 4.504 20 H 0.064 0.936 21 C 0.055 3.945 22 N -0.901 5.901 23 Si 0.898 3.102 24 H -0.282 1.282 25 H -0.287 1.287 26 H -0.272 1.272 27 H 0.077 0.923 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.056 0.944 40 H 0.090 0.910 41 H 0.065 0.935 42 H 0.008 0.992 43 H 0.076 0.924 44 H 0.049 0.951 45 H -0.010 1.010 46 H 0.040 0.960 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.805 5.232 -21.525 22.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.045 4.045 3 H 0.065 0.935 4 C 0.311 3.689 5 O -0.391 6.391 6 N -0.357 5.357 7 C -0.005 4.005 8 C -0.127 4.127 9 H 0.092 0.908 10 C -0.202 4.202 11 C -0.145 4.145 12 C -0.128 4.128 13 H 0.094 0.906 14 C -0.203 4.203 15 C -0.014 4.014 16 N -0.244 5.244 17 C -0.110 4.110 18 C 0.065 3.935 19 C -0.542 4.542 20 H 0.082 0.918 21 C -0.146 4.146 22 N -0.541 5.541 23 Si 0.726 3.274 24 H -0.208 1.208 25 H -0.213 1.213 26 H -0.197 1.197 27 H 0.096 0.904 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.109 0.891 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.108 0.892 41 H 0.083 0.917 42 H 0.026 0.974 43 H 0.095 0.905 44 H 0.068 0.932 45 H 0.008 0.992 46 H 0.058 0.942 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.752 4.175 -21.338 21.756 hybrid contribution 0.418 0.506 0.872 1.091 sum 1.170 4.681 -20.466 21.027 Atomic orbital electron populations 1.21814 0.92401 1.03854 1.01563 1.21558 0.97126 0.95195 0.90602 0.93521 1.20910 0.76753 0.87242 0.83961 1.90654 1.47323 1.16594 1.84485 1.48177 1.69962 1.09339 1.08177 1.21561 0.96449 0.98940 0.83572 1.21519 0.99708 0.96131 0.95364 0.90765 1.21751 1.01270 1.00910 0.96232 1.21642 1.01388 0.94650 0.96806 1.21457 0.99341 0.96499 0.95518 0.90552 1.21768 1.01791 0.94643 1.02111 1.21772 0.98257 0.81123 1.00239 1.61955 1.06544 1.54353 1.01504 1.22237 0.88491 0.98504 1.01793 1.19886 0.95492 0.93225 0.84912 1.21172 1.32943 1.08867 0.91265 0.91771 1.24964 0.95289 0.95410 0.98935 1.69951 1.36622 1.24601 1.22897 0.86492 0.77801 0.81077 0.82055 1.20787 1.21286 1.19713 0.90422 0.93043 0.91112 0.92062 0.89147 0.92373 0.92461 0.92576 0.91837 0.91774 0.92383 0.92152 0.92529 0.89163 0.91683 0.97394 0.90530 0.93215 0.99219 0.94201 0.92989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 8.36 37.16 0.31 -2.07 16 2 C 0.07 1.27 1.63 -68.87 -0.11 1.15 16 3 H 0.05 0.82 6.39 -51.93 -0.33 0.49 16 4 C 0.52 9.38 5.97 -10.99 -0.07 9.32 16 5 O -0.52 -11.18 14.88 5.56 0.08 -11.09 16 6 N -0.62 -8.49 2.98 -173.04 -0.52 -9.01 16 7 C 0.12 1.39 5.71 -3.71 -0.02 1.37 16 8 C -0.11 -1.00 2.87 -90.50 -0.26 -1.26 16 9 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 10 C -0.14 -1.08 9.20 37.16 0.34 -0.74 16 11 C -0.11 -0.86 4.45 -26.69 -0.12 -0.98 16 12 C -0.11 -0.96 2.86 -90.72 -0.26 -1.21 16 13 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 14 C -0.15 -1.04 9.20 37.16 0.34 -0.70 16 15 C 0.11 1.18 5.32 -3.93 -0.02 1.16 16 16 N -0.52 -11.97 4.31 -237.73 -1.02 -13.00 16 17 C 0.04 0.83 9.04 60.06 0.54 1.37 16 18 C 0.19 4.97 4.43 -4.97 -0.02 4.95 16 19 C -0.50 -14.48 8.52 -34.44 -0.29 -14.78 16 20 H 0.06 1.86 7.10 -52.49 -0.37 1.49 16 21 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 22 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 23 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 27 H 0.08 1.40 6.45 -51.93 -0.34 1.07 16 28 H 0.05 0.71 7.72 -51.93 -0.40 0.31 16 29 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.09 1.25 7.03 -51.93 -0.37 0.88 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.09 1.03 5.17 -51.93 -0.27 0.76 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 43 H 0.08 1.75 6.86 -51.93 -0.36 1.39 16 44 H 0.05 1.03 6.33 -51.93 -0.33 0.70 16 45 H -0.01 -0.28 8.12 -51.93 -0.42 -0.70 16 46 H 0.04 1.08 5.77 -51.93 -0.30 0.78 16 47 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 358.58 15.07 5.40 5.40 Total: -1.00 -32.33 358.58 -8.61 -40.93 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -8.53 Total: -3.32 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: 0.27 Total: -0.95 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: -0.80 Total: -47.99 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.08 Total: -11.09 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.33 -8.61 -40.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078647062.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.717 kcal (2) G-P(sol) polarization free energy of solvation -32.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds