Wall clock time and date at job start Tue Mar 31 2020 06:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46847 * 2 1 4 4 C 1.50697 * 109.47205 * 240.00422 * 2 1 3 5 5 O 1.21275 * 120.00307 * 263.04498 * 4 2 1 6 6 N 1.34781 * 120.00198 * 83.03877 * 4 2 1 7 7 C 1.46921 * 120.63277 * 184.83348 * 6 4 2 8 8 C 1.53191 * 108.77548 * 126.37306 * 7 6 4 9 9 H 1.09005 * 109.49848 * 294.68175 * 8 7 6 10 10 C 1.52999 * 109.49833 * 174.58740 * 8 7 6 11 11 C 1.53038 * 109.31814 * 54.63166 * 8 7 6 12 12 C 1.53042 * 109.53681 * 298.63773 * 11 8 7 13 13 H 1.08997 * 109.49784 * 301.41212 * 12 11 8 14 14 C 1.53001 * 109.49537 * 181.30874 * 12 11 8 15 15 C 1.46926 * 120.62761 * 4.55423 * 6 4 2 16 16 N 1.46894 * 109.47058 * 120.00078 * 2 1 3 17 17 C 1.46900 * 110.99816 * 182.50081 * 16 2 1 18 18 C 1.46900 * 111.00418 * 306.45799 * 16 2 1 19 19 C 1.50703 * 109.47058 * 170.00171 * 18 16 2 20 20 H 1.07997 * 120.00153 * 359.97438 * 19 18 16 21 21 C 1.37876 * 119.99775 * 180.02562 * 19 18 16 22 22 N 1.31514 * 120.00106 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99946 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47571 * 89.99741 * 23 21 19 25 25 H 1.48504 * 109.47092 * 209.99849 * 23 21 19 26 26 H 1.48497 * 109.47085 * 329.99427 * 23 21 19 27 27 H 1.08998 * 109.47059 * 305.62645 * 1 2 3 28 28 H 1.08999 * 109.47056 * 65.63263 * 1 2 3 29 29 H 1.08998 * 109.46904 * 185.63216 * 1 2 3 30 30 H 1.09001 * 109.58454 * 246.15527 * 7 6 4 31 31 H 1.08994 * 109.58869 * 6.58538 * 7 6 4 32 32 H 1.09000 * 109.47403 * 59.99921 * 10 8 7 33 33 H 1.09000 * 109.47086 * 179.97438 * 10 8 7 34 34 H 1.08999 * 109.46937 * 299.99840 * 10 8 7 35 35 H 1.09003 * 109.45601 * 58.65359 * 11 8 7 36 36 H 1.08993 * 109.46366 * 178.61486 * 11 8 7 37 37 H 1.09001 * 109.46969 * 60.00721 * 14 12 11 38 38 H 1.09004 * 109.46853 * 179.97438 * 14 12 11 39 39 H 1.08991 * 109.47350 * 300.00308 * 14 12 11 40 40 H 1.09000 * 109.58923 * 353.41829 * 15 6 4 41 41 H 1.09000 * 109.58541 * 113.84263 * 15 6 4 42 42 H 1.08997 * 109.47367 * 64.13061 * 17 16 2 43 43 H 1.09000 * 109.47292 * 184.13299 * 17 16 2 44 44 H 1.09002 * 109.47093 * 304.12949 * 17 16 2 45 45 H 1.09001 * 109.46354 * 289.99849 * 18 16 2 46 46 H 1.08993 * 109.46763 * 49.99910 * 18 16 2 47 47 H 0.96999 * 120.00175 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.3545 -1.8778 -1.1677 6 7 2.1237 -0.0481 -2.4008 7 6 2.5103 -0.7521 -3.6311 8 6 1.4507 -0.4863 -4.7050 9 1 0.5044 -0.9338 -4.4010 10 6 1.9033 -1.0993 -6.0318 11 6 1.2701 1.0238 -4.8753 12 6 0.7858 1.6331 -3.5576 13 1 -0.1542 1.1656 -3.2644 14 6 0.5743 3.1377 -3.7379 15 6 1.8325 1.3903 -2.4717 16 7 2.0197 -0.6925 1.1994 17 6 3.4869 -0.6605 1.2636 18 6 1.4269 -0.1213 2.4161 19 6 1.7535 -1.0015 3.5949 20 1 2.3422 -1.8959 3.4543 21 6 1.2999 -0.6654 4.8528 22 7 0.5826 0.4236 5.0239 23 14 1.7053 -1.7559 6.3141 24 1 2.9822 -1.3088 6.9264 25 1 0.6155 -1.6630 7.3186 26 1 1.8405 -3.1631 5.8592 27 1 -0.3633 0.5986 0.8353 28 1 -0.3633 0.4240 -0.9361 29 1 -0.3633 -1.0227 0.1009 30 1 3.4778 -0.3847 -3.9736 31 1 2.5719 -1.8226 -3.4356 32 1 2.0345 -2.1744 -5.9094 33 1 1.1489 -0.9103 -6.7954 34 1 2.8489 -0.6502 -6.3357 35 1 2.2225 1.4741 -5.1552 36 1 0.5344 1.2158 -5.6562 37 1 -0.1724 3.3092 -4.5133 38 1 0.2289 3.5711 -2.7993 39 1 1.5150 3.6044 -4.0297 40 1 1.4470 1.7329 -1.5114 41 1 2.7435 1.9358 -2.7177 42 1 3.8236 0.3709 1.3684 43 1 3.8259 -1.2422 2.1208 44 1 3.9000 -1.0864 0.3492 45 1 1.8327 0.8763 2.5840 46 1 0.3452 -0.0585 2.2981 47 1 0.2638 0.6602 5.9089 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078647062.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:24 Heat of formation + Delta-G solvation = -62.045655 kcal Electronic energy + Delta-G solvation = -23702.360375 eV Core-core repulsion = 20497.835759 eV Total energy + Delta-G solvation = -3204.524617 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.59071 -39.29266 -37.85261 -35.06930 -34.60746 -34.40434 -32.13957 -29.48973 -27.90485 -27.56705 -26.81987 -26.24861 -24.89609 -22.43990 -21.73799 -21.05602 -19.70545 -18.70525 -18.24570 -17.13737 -16.72286 -16.38964 -16.10921 -15.88706 -15.71283 -15.27457 -15.16462 -14.63967 -14.22394 -13.94276 -13.86515 -13.73567 -13.50734 -13.30244 -13.20455 -12.92571 -12.88903 -12.84838 -12.78379 -12.49546 -12.45750 -12.42727 -12.30743 -11.89098 -11.78850 -11.77283 -11.46507 -11.31309 -11.22564 -10.66765 -10.50294 -9.62468 -9.01033 -8.20242 -6.28590 1.40558 1.41775 1.53692 1.58178 1.91193 2.41439 3.11928 3.22740 3.47305 3.70870 3.85739 3.89710 3.94666 4.05884 4.10987 4.29691 4.37032 4.39837 4.52686 4.56491 4.63011 4.66726 4.68032 4.73995 4.79792 4.85305 4.88268 4.90567 5.01498 5.07771 5.09186 5.15871 5.17089 5.22568 5.28490 5.31097 5.33115 5.40818 5.55018 5.59037 5.65491 6.02718 6.27137 6.31008 6.59861 6.85109 7.21006 7.40012 8.90516 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029874 B = 0.003852 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.046242 B = 7266.316896 C = 7827.172410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.064 3.936 3 H 0.064 0.936 4 C 0.524 3.476 5 O -0.564 6.564 6 N -0.611 5.611 7 C 0.114 3.886 8 C -0.102 4.102 9 H 0.058 0.942 10 C -0.140 4.140 11 C -0.102 4.102 12 C -0.104 4.104 13 H 0.066 0.934 14 C -0.141 4.141 15 C 0.101 3.899 16 N -0.537 5.537 17 C 0.047 3.953 18 C 0.207 3.793 19 C -0.527 4.527 20 H 0.054 0.946 21 C 0.008 3.992 22 N -0.929 5.929 23 Si 0.965 3.035 24 H -0.272 1.272 25 H -0.278 1.278 26 H -0.271 1.271 27 H 0.065 0.935 28 H 0.087 0.913 29 H 0.049 0.951 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.056 0.944 39 H 0.065 0.935 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.017 0.983 43 H 0.058 0.942 44 H 0.057 0.943 45 H -0.032 1.032 46 H 0.027 0.973 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.992 6.302 -23.188 24.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.048 4.048 3 H 0.082 0.918 4 C 0.312 3.688 5 O -0.441 6.441 6 N -0.344 5.344 7 C -0.008 4.008 8 C -0.121 4.121 9 H 0.077 0.923 10 C -0.197 4.197 11 C -0.140 4.140 12 C -0.124 4.124 13 H 0.084 0.916 14 C -0.199 4.199 15 C -0.021 4.021 16 N -0.263 5.263 17 C -0.101 4.101 18 C 0.081 3.919 19 C -0.566 4.566 20 H 0.072 0.928 21 C -0.191 4.191 22 N -0.569 5.569 23 Si 0.790 3.210 24 H -0.197 1.197 25 H -0.203 1.203 26 H -0.196 1.196 27 H 0.084 0.916 28 H 0.106 0.894 29 H 0.068 0.932 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.035 0.965 43 H 0.077 0.923 44 H 0.076 0.924 45 H -0.014 1.014 46 H 0.045 0.955 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.938 5.289 -23.054 23.671 hybrid contribution 0.363 0.225 1.294 1.362 sum 1.300 5.513 -21.760 22.485 Atomic orbital electron populations 1.21729 0.91456 1.02550 1.02976 1.21661 0.97951 0.95728 0.89442 0.91813 1.20664 0.76689 0.86610 0.84813 1.90633 1.49814 1.18387 1.85315 1.48197 1.68159 1.10557 1.07455 1.21746 0.98338 0.97443 0.83313 1.21465 0.97950 0.97469 0.95224 0.92322 1.21724 1.02212 1.00440 0.95368 1.21635 1.02492 0.93181 0.96680 1.21421 0.97981 0.97837 0.95112 0.91576 1.21738 1.02665 0.93063 1.02414 1.22052 0.99934 0.79126 1.00956 1.61813 1.07224 1.55334 1.01896 1.22116 0.87889 0.98738 1.01372 1.19532 0.94657 0.91761 0.85918 1.21441 1.33345 1.09036 0.92746 0.92795 1.25792 0.94898 0.96733 1.01662 1.70048 1.37145 1.25902 1.23835 0.85444 0.78048 0.79031 0.78471 1.19732 1.20333 1.19605 0.91616 0.89424 0.93200 0.90328 0.91640 0.93051 0.91114 0.91472 0.90637 0.90161 0.91295 0.92452 0.91565 0.89841 0.89827 0.96476 0.92301 0.92380 1.01400 0.95476 0.92577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.50 8.36 71.98 0.60 -3.89 16 2 C 0.06 2.42 1.63 44.17 0.07 2.49 16 3 H 0.06 2.21 6.39 -2.39 -0.02 2.19 16 4 C 0.52 18.86 5.97 87.66 0.52 19.39 16 5 O -0.56 -25.00 14.88 -3.02 -0.04 -25.05 16 6 N -0.61 -16.05 2.98 -819.76 -2.44 -18.49 16 7 C 0.11 2.55 5.71 86.36 0.49 3.04 16 8 C -0.10 -1.69 2.87 -10.72 -0.03 -1.72 16 9 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 10 C -0.14 -1.77 9.20 71.98 0.66 -1.11 16 11 C -0.10 -1.30 4.45 30.62 0.14 -1.16 16 12 C -0.10 -1.54 2.86 -10.86 -0.03 -1.58 16 13 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 14 C -0.14 -1.57 9.20 71.98 0.66 -0.91 16 15 C 0.10 1.96 5.32 86.22 0.46 2.42 16 16 N -0.54 -25.50 4.31 -906.05 -3.90 -29.41 16 17 C 0.05 2.09 9.04 127.69 1.15 3.25 16 18 C 0.21 11.21 4.43 85.56 0.38 11.59 16 19 C -0.53 -31.05 8.52 25.60 0.22 -30.83 16 20 H 0.05 3.22 7.10 -2.91 -0.02 3.20 16 21 C 0.01 0.44 5.46 84.65 0.46 0.90 16 22 N -0.93 -55.62 13.29 21.45 0.28 -55.34 16 23 Si 0.97 45.44 29.54 68.60 2.03 47.47 16 24 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 25 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 26 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 27 H 0.06 2.43 6.45 -2.39 -0.02 2.41 16 28 H 0.09 2.34 7.72 -2.39 -0.02 2.32 16 29 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.07 1.83 7.03 -2.39 -0.02 1.81 16 32 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.08 1.75 5.17 -2.39 -0.01 1.74 16 41 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.06 2.77 6.86 -2.39 -0.02 2.75 16 44 H 0.06 2.45 6.33 -2.39 -0.02 2.44 16 45 H -0.03 -1.81 8.12 -2.39 -0.02 -1.83 16 46 H 0.03 1.53 5.77 -2.39 -0.01 1.51 16 47 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -70.98 358.58 2.60 -68.38 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: 0.91 Total: 10.54 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: 5.76 Total: 1.88 kcal Atomic # 7 Polarization: -97.17 SS G_CDS: -6.06 Total: -103.23 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: -0.04 Total: -25.05 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -70.98 2.60 -68.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078647062.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.336 kcal (2) G-P(sol) polarization free energy of solvation -70.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds