Wall clock time and date at job start Tue Mar 31 2020 06:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47062 * 2 1 4 4 C 1.50698 * 109.47132 * 240.00393 * 2 1 3 5 5 O 1.21289 * 120.00150 * 245.81799 * 4 2 1 6 6 N 1.34775 * 120.00361 * 65.81521 * 4 2 1 7 7 C 1.46929 * 120.62839 * 5.16125 * 6 4 2 8 8 C 1.53621 * 108.54132 * 126.36831 * 7 6 4 9 9 H 1.09000 * 109.65971 * 294.84292 * 8 7 6 10 10 C 1.53006 * 109.43001 * 174.72935 * 8 7 6 11 11 C 1.53038 * 109.24688 * 54.85901 * 8 7 6 12 12 C 1.53044 * 109.53383 * 298.51217 * 11 8 7 13 13 H 1.09000 * 109.52132 * 181.33158 * 12 11 8 14 14 C 1.52997 * 109.49600 * 301.41055 * 12 11 8 15 15 C 1.46924 * 120.63304 * 185.43920 * 6 4 2 16 16 N 1.46896 * 109.47345 * 120.00351 * 2 1 3 17 17 C 1.46895 * 111.00127 * 58.95307 * 16 2 1 18 18 C 1.46908 * 110.99860 * 294.99914 * 16 2 1 19 19 C 1.50700 * 109.46829 * 190.00282 * 18 16 2 20 20 H 1.07996 * 120.00597 * 359.97438 * 19 18 16 21 21 C 1.37881 * 119.99671 * 180.02562 * 19 18 16 22 22 N 1.31512 * 119.99794 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00178 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.47314 * 270.00239 * 23 21 19 25 25 H 1.48503 * 109.46882 * 29.99736 * 23 21 19 26 26 H 1.48495 * 109.47419 * 150.00042 * 23 21 19 27 27 H 1.09002 * 109.46833 * 174.36934 * 1 2 3 28 28 H 1.08997 * 109.47115 * 294.36341 * 1 2 3 29 29 H 1.08995 * 109.47332 * 54.36884 * 1 2 3 30 30 H 1.08999 * 109.58690 * 246.20048 * 7 6 4 31 31 H 1.09005 * 109.58232 * 6.62541 * 7 6 4 32 32 H 1.08998 * 109.46521 * 300.28288 * 10 8 7 33 33 H 1.08992 * 109.47291 * 60.28520 * 10 8 7 34 34 H 1.08994 * 109.47008 * 180.28972 * 10 8 7 35 35 H 1.08996 * 109.46552 * 178.49263 * 11 8 7 36 36 H 1.08996 * 109.45763 * 58.52512 * 11 8 7 37 37 H 1.08998 * 109.46993 * 179.84165 * 14 12 11 38 38 H 1.09002 * 109.47120 * 299.83849 * 14 12 11 39 39 H 1.08996 * 109.47547 * 59.83970 * 14 12 11 40 40 H 1.09000 * 109.58663 * 353.37860 * 15 6 4 41 41 H 1.09008 * 109.58189 * 113.65835 * 15 6 4 42 42 H 1.08997 * 109.47190 * 296.04696 * 17 16 2 43 43 H 1.09000 * 109.47159 * 56.04968 * 17 16 2 44 44 H 1.09002 * 109.47303 * 176.04669 * 17 16 2 45 45 H 1.08996 * 109.46863 * 69.99910 * 18 16 2 46 46 H 1.08996 * 109.47110 * 309.99874 * 18 16 2 47 47 H 0.97009 * 119.99926 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.6401 -1.7543 -1.1224 6 7 1.8061 -0.1856 -2.4511 7 6 1.1717 1.1320 -2.5937 8 6 2.0685 2.0131 -3.4764 9 1 3.0150 2.1980 -2.9684 10 6 1.3656 3.3450 -3.7468 11 6 2.3319 1.2961 -4.8025 12 6 3.0642 -0.0210 -4.5355 13 1 3.2727 -0.5202 -5.4817 14 6 4.3796 0.2646 -3.8081 15 6 2.1838 -0.9228 -3.6646 16 7 2.0197 -0.6925 1.1993 17 6 1.5284 -2.0761 1.2458 18 6 1.6487 0.0391 2.4181 19 6 2.3680 -0.5572 3.6004 20 1 3.0338 -1.3960 3.4607 21 6 2.1754 -0.0325 4.8609 22 7 1.3643 0.9886 5.0311 23 14 3.0664 -0.7720 6.3267 24 1 2.2346 -1.8503 6.9191 25 1 4.3660 -1.3369 5.8825 26 1 3.3068 0.2830 7.3436 27 1 -0.3633 -1.0227 -0.1008 28 1 -0.3633 0.4239 0.9361 29 1 -0.3634 0.5986 -0.8352 30 1 0.1935 1.0179 -3.0607 31 1 1.0587 1.5912 -1.6116 32 1 0.4187 3.1596 -4.2537 33 1 1.1783 3.8553 -2.8021 34 1 1.9992 3.9687 -4.3773 35 1 2.9460 1.9298 -5.4423 36 1 1.3834 1.0901 -5.2984 37 1 4.8995 -0.6739 -3.6157 38 1 5.0058 0.9062 -4.4281 39 1 4.1708 0.7648 -2.8625 40 1 2.7388 -1.8197 -3.3894 41 1 1.2862 -1.2032 -4.2160 42 1 0.4420 -2.0731 1.3346 43 1 1.8168 -2.5950 0.3317 44 1 1.9618 -2.5869 2.1057 45 1 0.5723 -0.0346 2.5726 46 1 1.9298 1.0869 2.3125 47 1 1.2284 1.3575 5.9179 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078647067.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:27 Heat of formation + Delta-G solvation = -33.712047 kcal Electronic energy + Delta-G solvation = -23979.127875 eV Core-core repulsion = 20775.831895 eV Total energy + Delta-G solvation = -3203.295979 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.51505 -38.28973 -36.22069 -33.78380 -33.42620 -32.57240 -30.07664 -27.12909 -26.97400 -26.85096 -25.91576 -24.98891 -23.34981 -21.77463 -20.58433 -19.19189 -18.46972 -16.92908 -16.42596 -15.78748 -15.32139 -15.13246 -14.61386 -14.35414 -14.26646 -14.12309 -13.80721 -13.57638 -13.31066 -12.86233 -12.78459 -12.38324 -12.31539 -12.10125 -11.84130 -11.70952 -11.70145 -11.44144 -11.18013 -11.05249 -10.92831 -10.86811 -10.75590 -10.63626 -10.58173 -10.43725 -10.25097 -9.92267 -9.25262 -8.86530 -8.47181 -8.38964 -7.12398 -5.99588 -3.99488 2.97666 3.09849 3.35423 3.41138 3.47244 4.42449 4.47580 4.55763 4.62288 4.80170 4.92531 5.02958 5.05788 5.21154 5.26696 5.35325 5.36517 5.46759 5.49859 5.51660 5.53938 5.59576 5.64043 5.71719 5.80331 5.83899 5.90887 5.97686 5.99086 6.06613 6.09805 6.13479 6.32984 6.40045 6.45892 6.58166 6.69085 7.05434 7.30179 7.38557 7.55949 7.86333 8.11071 8.26003 8.53195 8.62471 9.08772 9.64356 11.11465 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025456 B = 0.004087 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.687402 B = 6849.249079 C = 7189.814131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.066 3.934 3 H 0.096 0.904 4 C 0.526 3.474 5 O -0.519 6.519 6 N -0.616 5.616 7 C 0.111 3.889 8 C -0.112 4.112 9 H 0.081 0.919 10 C -0.146 4.146 11 C -0.107 4.107 12 C -0.106 4.106 13 H 0.077 0.923 14 C -0.145 4.145 15 C 0.116 3.884 16 N -0.518 5.518 17 C 0.022 3.978 18 C 0.193 3.807 19 C -0.503 4.503 20 H 0.064 0.936 21 C 0.055 3.945 22 N -0.901 5.901 23 Si 0.898 3.102 24 H -0.281 1.281 25 H -0.272 1.272 26 H -0.287 1.287 27 H 0.058 0.942 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.055 0.945 38 H 0.050 0.950 39 H 0.061 0.939 40 H 0.091 0.909 41 H 0.061 0.939 42 H 0.006 0.994 43 H 0.078 0.922 44 H 0.068 0.932 45 H -0.005 1.005 46 H 0.028 0.972 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.707 2.925 -21.214 21.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.047 4.047 3 H 0.114 0.886 4 C 0.315 3.685 5 O -0.394 6.394 6 N -0.352 5.352 7 C -0.012 4.012 8 C -0.131 4.131 9 H 0.099 0.901 10 C -0.204 4.204 11 C -0.145 4.145 12 C -0.125 4.125 13 H 0.095 0.905 14 C -0.202 4.202 15 C -0.007 4.007 16 N -0.242 5.242 17 C -0.126 4.126 18 C 0.068 3.932 19 C -0.542 4.542 20 H 0.082 0.918 21 C -0.146 4.146 22 N -0.541 5.541 23 Si 0.726 3.274 24 H -0.208 1.208 25 H -0.197 1.197 26 H -0.213 1.213 27 H 0.077 0.923 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.109 0.891 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.110 0.890 41 H 0.079 0.921 42 H 0.024 0.976 43 H 0.096 0.904 44 H 0.087 0.913 45 H 0.013 0.987 46 H 0.046 0.954 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.914 2.436 -20.997 21.157 hybrid contribution -0.555 -0.101 0.892 1.056 sum -1.469 2.336 -20.104 20.293 Atomic orbital electron populations 1.22490 0.96247 1.02428 1.03144 1.21603 0.93573 0.98805 0.90730 0.88590 1.20889 0.78398 0.85310 0.83933 1.90569 1.39638 1.23743 1.85465 1.48086 1.62084 1.19379 1.05603 1.21985 0.95344 0.82766 1.01121 1.21672 0.99974 0.94935 0.96549 0.90084 1.21776 1.00393 0.96249 1.01950 1.21597 1.00228 0.95961 0.96711 1.21483 0.95916 0.96338 0.98774 0.90455 1.21821 0.95996 1.01750 1.00682 1.21554 0.98262 0.95621 0.85252 1.62132 1.58435 1.02431 1.01180 1.22559 0.96006 0.90764 1.03236 1.19788 0.94527 0.93700 0.85171 1.21174 1.25983 1.16012 0.91020 0.91786 1.24967 0.95550 0.95137 0.98950 1.69956 1.37135 1.24241 1.22764 0.86498 0.80196 0.78670 0.82086 1.20769 1.19729 1.21296 0.92336 0.90509 0.92416 0.91600 0.89118 0.92606 0.92183 0.92445 0.91830 0.91938 0.92633 0.93044 0.92039 0.89048 0.92109 0.97554 0.90382 0.91324 0.98683 0.95436 0.93012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.95 8.09 37.16 0.30 -2.65 16 2 C 0.07 1.20 1.92 -68.87 -0.13 1.07 16 3 H 0.10 1.69 7.04 -51.93 -0.37 1.32 16 4 C 0.53 9.07 6.80 -10.99 -0.07 8.99 16 5 O -0.52 -10.67 13.09 5.55 0.07 -10.60 16 6 N -0.62 -8.02 2.41 -172.50 -0.41 -8.44 16 7 C 0.11 1.15 4.33 -3.49 -0.02 1.13 16 8 C -0.11 -0.99 2.54 -90.27 -0.23 -1.22 16 9 H 0.08 0.83 6.33 -51.93 -0.33 0.50 16 10 C -0.15 -1.06 9.20 37.16 0.34 -0.72 16 11 C -0.11 -0.86 4.71 -26.69 -0.13 -0.99 16 12 C -0.11 -0.98 3.21 -90.50 -0.29 -1.27 16 13 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 14 C -0.15 -1.56 8.70 37.16 0.32 -1.23 16 15 C 0.12 1.31 5.83 -3.71 -0.02 1.29 16 16 N -0.52 -11.90 4.57 -237.74 -1.09 -12.99 16 17 C 0.02 0.49 8.43 60.06 0.51 1.00 16 18 C 0.19 5.08 4.17 -4.97 -0.02 5.06 16 19 C -0.50 -14.52 8.52 -34.44 -0.29 -14.81 16 20 H 0.06 1.87 7.10 -52.49 -0.37 1.50 16 21 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 22 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 23 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 H 0.06 0.96 6.80 -51.93 -0.35 0.61 16 28 H 0.08 1.37 6.49 -51.93 -0.34 1.03 16 29 H 0.06 0.73 5.92 -51.93 -0.31 0.42 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.09 0.99 4.93 -51.93 -0.26 0.73 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.77 5.97 -51.93 -0.31 0.46 16 40 H 0.09 1.21 7.00 -51.93 -0.36 0.85 16 41 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 42 H 0.01 0.13 6.64 -51.93 -0.34 -0.22 16 43 H 0.08 1.68 5.16 -51.93 -0.27 1.42 16 44 H 0.07 1.61 6.86 -51.93 -0.36 1.25 16 45 H 0.00 -0.12 6.81 -51.93 -0.35 -0.48 16 46 H 0.03 0.76 8.00 -51.93 -0.42 0.34 16 47 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 346.91 15.07 5.23 5.23 Total: -1.00 -31.97 346.91 -8.41 -40.38 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -8.09 Total: -1.68 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: 0.17 Total: -2.88 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: -0.77 Total: -47.53 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.07 Total: -10.60 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.97 -8.41 -40.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078647067.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.671 kcal (2) G-P(sol) polarization free energy of solvation -31.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds