Wall clock time and date at job start Tue Mar 31 2020 06:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47062 * 2 1 4 4 C 1.50698 * 109.47132 * 240.00393 * 2 1 3 5 5 O 1.21289 * 120.00150 * 245.81799 * 4 2 1 6 6 N 1.34775 * 120.00361 * 65.81521 * 4 2 1 7 7 C 1.46929 * 120.62839 * 5.16125 * 6 4 2 8 8 C 1.53621 * 108.54132 * 126.36831 * 7 6 4 9 9 H 1.09000 * 109.65971 * 294.84292 * 8 7 6 10 10 C 1.53006 * 109.43001 * 174.72935 * 8 7 6 11 11 C 1.53038 * 109.24688 * 54.85901 * 8 7 6 12 12 C 1.53044 * 109.53383 * 298.51217 * 11 8 7 13 13 H 1.09000 * 109.52132 * 181.33158 * 12 11 8 14 14 C 1.52997 * 109.49600 * 301.41055 * 12 11 8 15 15 C 1.46924 * 120.63304 * 185.43920 * 6 4 2 16 16 N 1.46896 * 109.47345 * 120.00351 * 2 1 3 17 17 C 1.46895 * 111.00127 * 58.95307 * 16 2 1 18 18 C 1.46908 * 110.99860 * 294.99914 * 16 2 1 19 19 C 1.50700 * 109.46829 * 190.00282 * 18 16 2 20 20 H 1.07996 * 120.00597 * 359.97438 * 19 18 16 21 21 C 1.37881 * 119.99671 * 180.02562 * 19 18 16 22 22 N 1.31512 * 119.99794 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00178 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.47314 * 270.00239 * 23 21 19 25 25 H 1.48503 * 109.46882 * 29.99736 * 23 21 19 26 26 H 1.48495 * 109.47419 * 150.00042 * 23 21 19 27 27 H 1.09002 * 109.46833 * 174.36934 * 1 2 3 28 28 H 1.08997 * 109.47115 * 294.36341 * 1 2 3 29 29 H 1.08995 * 109.47332 * 54.36884 * 1 2 3 30 30 H 1.08999 * 109.58690 * 246.20048 * 7 6 4 31 31 H 1.09005 * 109.58232 * 6.62541 * 7 6 4 32 32 H 1.08998 * 109.46521 * 300.28288 * 10 8 7 33 33 H 1.08992 * 109.47291 * 60.28520 * 10 8 7 34 34 H 1.08994 * 109.47008 * 180.28972 * 10 8 7 35 35 H 1.08996 * 109.46552 * 178.49263 * 11 8 7 36 36 H 1.08996 * 109.45763 * 58.52512 * 11 8 7 37 37 H 1.08998 * 109.46993 * 179.84165 * 14 12 11 38 38 H 1.09002 * 109.47120 * 299.83849 * 14 12 11 39 39 H 1.08996 * 109.47547 * 59.83970 * 14 12 11 40 40 H 1.09000 * 109.58663 * 353.37860 * 15 6 4 41 41 H 1.09008 * 109.58189 * 113.65835 * 15 6 4 42 42 H 1.08997 * 109.47190 * 296.04696 * 17 16 2 43 43 H 1.09000 * 109.47159 * 56.04968 * 17 16 2 44 44 H 1.09002 * 109.47303 * 176.04669 * 17 16 2 45 45 H 1.08996 * 109.46863 * 69.99910 * 18 16 2 46 46 H 1.08996 * 109.47110 * 309.99874 * 18 16 2 47 47 H 0.97009 * 119.99926 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.6401 -1.7543 -1.1224 6 7 1.8061 -0.1856 -2.4511 7 6 1.1717 1.1320 -2.5937 8 6 2.0685 2.0131 -3.4764 9 1 3.0150 2.1980 -2.9684 10 6 1.3656 3.3450 -3.7468 11 6 2.3319 1.2961 -4.8025 12 6 3.0642 -0.0210 -4.5355 13 1 3.2727 -0.5202 -5.4817 14 6 4.3796 0.2646 -3.8081 15 6 2.1838 -0.9228 -3.6646 16 7 2.0197 -0.6925 1.1993 17 6 1.5284 -2.0761 1.2458 18 6 1.6487 0.0391 2.4181 19 6 2.3680 -0.5572 3.6004 20 1 3.0338 -1.3960 3.4607 21 6 2.1754 -0.0325 4.8609 22 7 1.3643 0.9886 5.0311 23 14 3.0664 -0.7720 6.3267 24 1 2.2346 -1.8503 6.9191 25 1 4.3660 -1.3369 5.8825 26 1 3.3068 0.2830 7.3436 27 1 -0.3633 -1.0227 -0.1008 28 1 -0.3633 0.4239 0.9361 29 1 -0.3634 0.5986 -0.8352 30 1 0.1935 1.0179 -3.0607 31 1 1.0587 1.5912 -1.6116 32 1 0.4187 3.1596 -4.2537 33 1 1.1783 3.8553 -2.8021 34 1 1.9992 3.9687 -4.3773 35 1 2.9460 1.9298 -5.4423 36 1 1.3834 1.0901 -5.2984 37 1 4.8995 -0.6739 -3.6157 38 1 5.0058 0.9062 -4.4281 39 1 4.1708 0.7648 -2.8625 40 1 2.7388 -1.8197 -3.3894 41 1 1.2862 -1.2032 -4.2160 42 1 0.4420 -2.0731 1.3346 43 1 1.8168 -2.5950 0.3317 44 1 1.9618 -2.5869 2.1057 45 1 0.5723 -0.0346 2.5726 46 1 1.9298 1.0869 2.3125 47 1 1.2284 1.3575 5.9179 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078647067.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:27 Heat of formation + Delta-G solvation = -53.979929 kcal Electronic energy + Delta-G solvation = -23980.006756 eV Core-core repulsion = 20775.831895 eV Total energy + Delta-G solvation = -3204.174860 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.69887 -39.47044 -37.82827 -35.03269 -34.61626 -34.16027 -31.64768 -29.07371 -27.99146 -27.54365 -27.15507 -26.58731 -24.96571 -22.77398 -22.00969 -20.41980 -19.48300 -18.56730 -18.21136 -17.01865 -16.65482 -16.48185 -16.00054 -15.70137 -15.54384 -15.27955 -14.98274 -14.94274 -14.39112 -14.34591 -14.20274 -13.75537 -13.48544 -13.21502 -13.01282 -12.94861 -12.83265 -12.69649 -12.61221 -12.52090 -12.41403 -12.39961 -12.12685 -11.98963 -11.92517 -11.67292 -11.37494 -11.35943 -11.10682 -10.61026 -10.37075 -9.54033 -8.95700 -8.21038 -6.29800 1.39814 1.40900 1.53019 1.62586 1.96638 2.40795 3.11290 3.32891 3.50481 3.75036 3.88708 3.92711 4.02246 4.06527 4.09634 4.23949 4.42932 4.50174 4.57753 4.60528 4.65648 4.68594 4.72583 4.75954 4.81927 4.83613 4.88983 4.93588 5.04205 5.08609 5.13353 5.14344 5.19496 5.24365 5.29621 5.32267 5.35192 5.43462 5.56746 5.64689 5.68794 6.03129 6.30943 6.35431 6.63786 6.84845 7.24975 7.39236 8.89701 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025456 B = 0.004087 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.687402 B = 6849.249079 C = 7189.814131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.062 3.938 3 H 0.099 0.901 4 C 0.526 3.474 5 O -0.562 6.562 6 N -0.604 5.604 7 C 0.102 3.898 8 C -0.109 4.109 9 H 0.062 0.938 10 C -0.141 4.141 11 C -0.102 4.102 12 C -0.100 4.100 13 H 0.100 0.900 14 C -0.144 4.144 15 C 0.111 3.889 16 N -0.536 5.536 17 C 0.034 3.966 18 C 0.212 3.788 19 C -0.528 4.528 20 H 0.053 0.947 21 C 0.007 3.993 22 N -0.930 5.930 23 Si 0.966 3.034 24 H -0.272 1.272 25 H -0.271 1.271 26 H -0.277 1.277 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.038 0.962 38 H 0.067 0.933 39 H 0.037 0.963 40 H 0.067 0.933 41 H 0.086 0.914 42 H 0.012 0.988 43 H 0.085 0.915 44 H 0.047 0.953 45 H -0.023 1.023 46 H 0.007 0.993 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.301 3.548 -23.205 23.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.050 4.050 3 H 0.117 0.883 4 C 0.315 3.685 5 O -0.440 6.440 6 N -0.337 5.337 7 C -0.020 4.020 8 C -0.128 4.128 9 H 0.080 0.920 10 C -0.199 4.199 11 C -0.139 4.139 12 C -0.119 4.119 13 H 0.118 0.882 14 C -0.201 4.201 15 C -0.011 4.011 16 N -0.260 5.260 17 C -0.114 4.114 18 C 0.086 3.914 19 C -0.566 4.566 20 H 0.072 0.928 21 C -0.191 4.191 22 N -0.570 5.570 23 Si 0.790 3.210 24 H -0.198 1.198 25 H -0.195 1.195 26 H -0.202 1.202 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.115 0.885 30 H 0.110 0.890 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.057 0.943 38 H 0.086 0.914 39 H 0.056 0.944 40 H 0.085 0.915 41 H 0.104 0.896 42 H 0.030 0.970 43 H 0.104 0.896 44 H 0.066 0.934 45 H -0.005 1.005 46 H 0.025 0.975 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.527 3.091 -23.041 23.298 hybrid contribution -0.367 -0.237 1.412 1.478 sum -1.894 2.854 -21.629 21.899 Atomic orbital electron populations 1.22358 0.94219 1.02770 1.03638 1.21670 0.95227 0.98553 0.89589 0.88316 1.20583 0.78305 0.84785 0.84856 1.90542 1.41800 1.25524 1.86163 1.48066 1.60720 1.20145 1.04761 1.22271 0.96747 0.81413 1.01532 1.21626 0.98919 0.95638 0.96634 0.91988 1.21741 1.00995 0.95136 1.02042 1.21589 1.01129 0.94973 0.96250 1.21485 0.94558 0.96993 0.98831 0.88201 1.21804 0.97294 1.00901 1.00123 1.21758 0.99516 0.95096 0.84696 1.61960 1.59557 1.02826 1.01658 1.22419 0.96055 0.90287 1.02594 1.19401 0.92946 0.92699 0.86305 1.21446 1.26446 1.16172 0.92535 0.92836 1.25807 0.96157 0.95411 1.01733 1.70056 1.38037 1.25166 1.23734 0.85441 0.78936 0.78170 0.78429 1.19774 1.19530 1.20236 0.92700 0.92644 0.88470 0.88963 0.89947 0.91196 0.92715 0.91647 0.90476 0.90152 0.94327 0.91382 0.94435 0.91492 0.89611 0.97001 0.89636 0.93426 1.00517 0.97454 0.92577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.42 8.09 71.98 0.58 -4.83 16 2 C 0.06 2.30 1.92 44.17 0.08 2.38 16 3 H 0.10 3.56 7.04 -2.39 -0.02 3.55 16 4 C 0.53 18.24 6.80 87.66 0.60 18.84 16 5 O -0.56 -23.68 13.09 -3.06 -0.04 -23.72 16 6 N -0.60 -14.97 2.41 -818.05 -1.97 -16.94 16 7 C 0.10 1.87 4.33 86.51 0.37 2.25 16 8 C -0.11 -1.66 2.54 -10.57 -0.03 -1.69 16 9 H 0.06 1.20 6.33 -2.39 -0.02 1.19 16 10 C -0.14 -1.63 9.20 71.98 0.66 -0.97 16 11 C -0.10 -1.26 4.71 30.62 0.14 -1.11 16 12 C -0.10 -1.59 3.21 -10.72 -0.03 -1.63 16 13 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 14 C -0.14 -2.97 8.70 71.98 0.63 -2.35 16 15 C 0.11 2.32 5.83 86.36 0.50 2.82 16 16 N -0.54 -25.53 4.57 -906.06 -4.14 -29.67 16 17 C 0.03 1.57 8.43 127.69 1.08 2.65 16 18 C 0.21 11.62 4.17 85.56 0.36 11.98 16 19 C -0.53 -31.35 8.52 25.60 0.22 -31.14 16 20 H 0.05 3.23 7.10 -2.91 -0.02 3.20 16 21 C 0.01 0.42 5.46 84.66 0.46 0.88 16 22 N -0.93 -56.11 13.29 21.45 0.28 -55.82 16 23 Si 0.97 45.71 29.54 68.60 2.03 47.73 16 24 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 25 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 26 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 27 H 0.05 1.77 6.80 -2.39 -0.02 1.76 16 28 H 0.05 2.01 6.49 -2.39 -0.02 1.99 16 29 H 0.10 2.26 5.92 -2.39 -0.01 2.24 16 30 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.08 1.66 4.93 -2.38 -0.01 1.65 16 32 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.06 0.67 8.14 -2.39 -0.02 0.66 16 35 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.04 0.90 8.14 -2.39 -0.02 0.89 16 38 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.04 0.95 5.97 -2.39 -0.01 0.93 16 40 H 0.07 1.76 7.00 -2.39 -0.02 1.75 16 41 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 42 H 0.01 0.51 6.64 -2.39 -0.02 0.49 16 43 H 0.09 3.80 5.16 -2.39 -0.01 3.79 16 44 H 0.05 2.32 6.86 -2.39 -0.02 2.30 16 45 H -0.02 -1.31 6.81 -2.39 -0.02 -1.32 16 46 H 0.01 0.43 8.00 -2.39 -0.02 0.41 16 47 H 0.27 15.00 8.31 -92.70 -0.77 14.23 16 Total: -1.00 -71.10 346.91 2.72 -68.38 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: 0.93 Total: 11.95 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: 5.63 Total: -1.91 kcal Atomic # 7 Polarization: -96.61 SS G_CDS: -5.82 Total: -102.43 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.04 Total: -23.72 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.73 kcal Total: -71.10 2.72 -68.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078647067.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.397 kcal (2) G-P(sol) polarization free energy of solvation -71.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds