Wall clock time and date at job start Tue Mar 31 2020 06:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.52997 * 109.47127 * 179.97438 * 4 2 1 6 6 C 1.53005 * 109.47452 * 59.99878 * 5 4 2 7 7 C 1.53006 * 109.46542 * 300.00026 * 6 5 4 8 8 H 1.09001 * 109.47369 * 299.99416 * 7 6 5 9 9 C 1.53005 * 109.46542 * 179.97438 * 7 6 5 10 10 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 11 11 N 1.46496 * 109.47337 * 300.00145 * 10 2 1 12 12 C 1.34777 * 120.00258 * 154.99817 * 11 10 2 13 13 O 1.21587 * 120.00357 * 359.97438 * 12 11 10 14 14 N 1.34784 * 119.99890 * 180.02562 * 12 11 10 15 15 C 1.46495 * 119.99609 * 179.97438 * 14 12 11 16 16 C 1.53006 * 109.47063 * 179.97438 * 15 14 12 17 17 C 1.53002 * 109.47161 * 179.97438 * 16 15 14 18 18 C 1.50702 * 109.46730 * 180.02562 * 17 16 15 19 19 H 1.07997 * 120.00419 * 0.02562 * 18 17 16 20 20 C 1.37875 * 119.99772 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99981 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 120.00086 * 359.97438 * 20 18 17 23 23 H 1.48494 * 109.47273 * 89.99841 * 22 20 18 24 24 H 1.48502 * 109.47070 * 210.00133 * 22 20 18 25 25 H 1.48505 * 109.46838 * 329.99970 * 22 20 18 26 26 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 29 29 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 30 30 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 31 31 H 1.09001 * 109.47289 * 299.99953 * 5 4 2 32 32 H 1.09002 * 109.47153 * 179.97438 * 5 4 2 33 33 H 1.09000 * 109.47360 * 180.02562 * 6 5 4 34 34 H 1.08998 * 109.47061 * 59.99332 * 6 5 4 35 35 H 1.09001 * 109.46812 * 299.99757 * 9 7 6 36 36 H 1.09000 * 109.47360 * 60.00124 * 9 7 6 37 37 H 1.09002 * 109.46935 * 180.02562 * 9 7 6 38 38 H 1.09001 * 109.47066 * 60.00169 * 10 2 1 39 39 H 0.97002 * 120.00183 * 335.00285 * 11 10 2 40 40 H 0.97000 * 119.99955 * 359.97438 * 14 12 11 41 41 H 1.09004 * 109.47541 * 299.99144 * 15 14 12 42 42 H 1.09003 * 109.47658 * 59.99700 * 15 14 12 43 43 H 1.08995 * 109.46792 * 299.99986 * 16 15 14 44 44 H 1.09003 * 109.46668 * 59.99657 * 16 15 14 45 45 H 1.08997 * 109.46938 * 300.00121 * 17 16 15 46 46 H 1.08994 * 109.47106 * 60.00497 * 17 16 15 47 47 H 0.97004 * 119.99663 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5700 -0.7206 -1.2497 6 6 4.0806 -1.4416 -0.0005 7 6 3.5705 -0.7203 1.2488 8 1 3.9335 0.3075 1.2487 9 6 4.0806 -1.4416 2.4980 10 6 2.0400 -0.7212 1.2491 11 7 1.5518 -0.0307 2.4453 12 6 1.4231 -0.7031 3.6063 13 8 1.7118 -1.8830 3.6608 14 7 0.9734 -0.0679 4.7067 15 6 0.8330 -0.7990 5.9684 16 6 0.3087 0.1473 7.0505 17 6 0.1615 -0.6164 8.3681 18 6 -0.3554 0.3155 9.4337 19 1 -0.5591 1.3489 9.1949 20 6 -0.5685 -0.1512 10.7134 21 7 -1.0201 0.6619 11.6432 22 14 -0.2170 -1.9388 11.1263 23 1 1.1911 -2.0750 11.5777 24 1 -1.1294 -2.3853 12.2095 25 1 -0.4333 -2.7773 9.9198 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.6767 -1.7489 -1.2494 30 1 1.6767 -0.2073 -2.1392 31 1 3.9330 0.3072 -1.2498 32 1 3.9333 -1.2348 -2.1395 33 1 5.1706 -1.4408 -0.0005 34 1 3.7176 -2.4693 -0.0002 35 1 3.7173 -2.4693 2.4979 36 1 5.1706 -1.4416 2.4980 37 1 3.7169 -0.9281 3.3880 38 1 1.6768 -1.7489 1.2491 39 1 1.3210 0.9104 2.4019 40 1 0.7427 0.8732 4.6632 41 1 0.1318 -1.6228 5.8350 42 1 1.8035 -1.1931 6.2700 43 1 1.0101 0.9708 7.1838 44 1 -0.6617 0.5417 6.7491 45 1 -0.5401 -1.4398 8.2344 46 1 1.1317 -1.0111 8.6697 47 1 -1.1703 0.3334 12.5435 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081492594.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:50 Heat of formation + Delta-G solvation = -73.127275 kcal Electronic energy + Delta-G solvation = -22706.649619 eV Core-core repulsion = 19501.644468 eV Total energy + Delta-G solvation = -3205.005152 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.56303 -38.68761 -35.51974 -34.23139 -33.65456 -33.23735 -31.54726 -30.44054 -27.32434 -26.46938 -26.12916 -23.01878 -21.90009 -21.05756 -20.67634 -20.34759 -20.04257 -17.95491 -16.89289 -16.43137 -15.81022 -15.12744 -14.97997 -14.67270 -14.43232 -14.28593 -13.97904 -13.78418 -13.47977 -13.01767 -12.68766 -12.66351 -12.51251 -12.37810 -11.97499 -11.94994 -11.87033 -11.43108 -11.25986 -11.04271 -11.01185 -10.88420 -10.74258 -10.63632 -10.36974 -10.17257 -9.95653 -9.78282 -9.63955 -9.21395 -9.04233 -8.60649 -8.54311 -6.05364 -4.03923 2.83023 3.32513 3.38853 3.39947 3.44714 4.27505 4.31216 4.42420 4.45631 4.57971 4.76036 4.85286 5.08334 5.10954 5.13714 5.18272 5.28937 5.38029 5.42250 5.57751 5.58944 5.62264 5.66037 5.72325 5.75673 5.78718 5.87906 5.90239 5.92733 6.03189 6.06894 6.08196 6.22033 6.38773 6.49149 6.49686 6.58194 6.73818 6.86653 7.07794 7.25472 7.38712 7.77142 8.17267 8.51376 8.78670 8.98571 9.57076 11.07896 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035732 B = 0.002805 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.427647 B = 9980.966144 C =10375.841928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 H 0.073 0.927 4 C -0.111 4.111 5 C -0.121 4.121 6 C -0.113 4.113 7 C -0.101 4.101 8 H 0.066 0.934 9 C -0.137 4.137 10 C 0.175 3.825 11 N -0.745 5.745 12 C 0.701 3.299 13 O -0.589 6.589 14 N -0.744 5.744 15 C 0.134 3.866 16 C -0.113 4.113 17 C -0.011 4.011 18 C -0.521 4.521 19 H 0.071 0.929 20 C 0.066 3.934 21 N -0.904 5.904 22 Si 0.880 3.120 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.264 1.264 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.041 0.959 37 H 0.056 0.944 38 H 0.087 0.913 39 H 0.392 0.608 40 H 0.394 0.606 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.019 0.981 46 H 0.014 0.986 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.765 -0.452 -28.004 29.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 H 0.092 0.908 4 C -0.149 4.149 5 C -0.159 4.159 6 C -0.151 4.151 7 C -0.121 4.121 8 H 0.085 0.915 9 C -0.194 4.194 10 C 0.069 3.931 11 N -0.400 5.400 12 C 0.401 3.599 13 O -0.467 6.467 14 N -0.399 5.399 15 C 0.011 3.989 16 C -0.151 4.151 17 C -0.049 4.049 18 C -0.559 4.559 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.543 5.543 22 Si 0.707 3.293 23 H -0.202 1.202 24 H -0.214 1.214 25 H -0.188 1.188 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.105 0.895 39 H 0.226 0.774 40 H 0.227 0.773 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.037 0.963 46 H 0.033 0.967 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.964 -1.570 -27.725 28.889 hybrid contribution -0.062 0.110 0.424 0.442 sum 7.902 -1.460 -27.301 28.459 Atomic orbital electron populations 1.21818 0.94624 1.02248 1.01716 1.21405 0.96102 0.99897 0.94340 0.90825 1.21553 0.95589 1.00905 0.96815 1.21574 0.95508 1.00841 0.97969 1.21587 1.00358 0.99587 0.93576 1.21569 0.95223 0.99793 0.95478 0.91531 1.21831 0.99074 1.01486 0.97020 1.20855 0.92693 0.97178 0.82344 1.45182 1.72240 1.13437 1.09134 1.15958 0.78352 0.85281 0.80285 1.90916 1.56867 1.14359 1.84557 1.45356 1.70837 1.13865 1.09793 1.21476 1.01072 0.95169 0.81203 1.21701 1.00366 0.98080 0.94921 1.19498 0.96661 0.96395 0.92328 1.21102 1.43778 0.97734 0.93323 0.91040 1.25030 0.94535 0.97621 0.96322 1.69916 1.46042 1.35449 1.02862 0.86774 0.78376 0.85788 0.78361 1.20246 1.21395 1.18850 0.92383 0.92532 0.92645 0.91631 0.91623 0.91992 0.91924 0.91851 0.91728 0.91861 0.94011 0.92449 0.89493 0.77444 0.77321 0.92082 0.92099 0.92227 0.92201 0.96306 0.96741 0.92716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.04 37.16 0.34 -0.72 16 2 C -0.10 -0.70 2.30 -90.62 -0.21 -0.90 16 3 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 4 C -0.11 -0.70 5.20 -26.73 -0.14 -0.84 16 5 C -0.12 -0.77 5.92 -26.73 -0.16 -0.93 16 6 C -0.11 -0.88 5.20 -26.73 -0.14 -1.02 16 7 C -0.10 -0.95 2.44 -90.59 -0.22 -1.17 16 8 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 9 C -0.14 -1.66 7.72 37.16 0.29 -1.37 16 10 C 0.17 1.68 1.63 -67.91 -0.11 1.57 16 11 N -0.75 -7.65 4.28 -58.65 -0.25 -7.90 16 12 C 0.70 10.00 6.92 -86.91 -0.60 9.40 16 13 O -0.59 -10.59 13.47 5.29 0.07 -10.52 16 14 N -0.74 -10.26 5.56 -65.22 -0.36 -10.62 16 15 C 0.13 2.26 5.67 -4.04 -0.02 2.23 16 16 C -0.11 -2.11 5.27 -26.73 -0.14 -2.25 16 17 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 18 C -0.52 -14.76 9.66 -34.44 -0.33 -15.09 16 19 H 0.07 2.15 7.99 -52.49 -0.42 1.74 16 20 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 21 N -0.90 -27.88 13.96 55.43 0.77 -27.11 16 22 Si 0.88 21.88 27.47 -169.99 -4.67 17.21 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 26 H 0.06 0.44 7.45 -51.93 -0.39 0.05 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.88 7.53 -51.93 -0.39 0.48 16 36 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.82 5.78 -51.93 -0.30 0.52 16 38 H 0.09 1.05 7.58 -51.93 -0.39 0.66 16 39 H 0.39 3.06 8.40 -40.82 -0.34 2.72 16 40 H 0.39 4.38 8.49 -40.82 -0.35 4.03 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 46 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 47 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 360.38 15.07 5.43 5.43 Total: -1.00 -32.28 360.38 -9.52 -41.80 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -8.85 Total: 1.34 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: -1.66 Total: -9.63 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: 0.16 Total: -45.64 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.07 Total: -10.52 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.21 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.28 -9.52 -41.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081492594.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.326 kcal (2) G-P(sol) polarization free energy of solvation -32.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds