Wall clock time and date at job start Tue Mar 31 2020 06:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.52997 * 109.47127 * 179.97438 * 4 2 1 6 6 C 1.53005 * 109.47452 * 59.99878 * 5 4 2 7 7 C 1.53006 * 109.46542 * 300.00026 * 6 5 4 8 8 H 1.09001 * 109.47369 * 299.99416 * 7 6 5 9 9 C 1.53005 * 109.46542 * 179.97438 * 7 6 5 10 10 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 11 11 N 1.46496 * 109.47337 * 300.00145 * 10 2 1 12 12 C 1.34777 * 120.00258 * 154.99817 * 11 10 2 13 13 O 1.21587 * 120.00357 * 359.97438 * 12 11 10 14 14 N 1.34784 * 119.99890 * 180.02562 * 12 11 10 15 15 C 1.46495 * 119.99609 * 179.97438 * 14 12 11 16 16 C 1.53006 * 109.47063 * 179.97438 * 15 14 12 17 17 C 1.53002 * 109.47161 * 179.97438 * 16 15 14 18 18 C 1.50702 * 109.46730 * 180.02562 * 17 16 15 19 19 H 1.07997 * 120.00419 * 0.02562 * 18 17 16 20 20 C 1.37875 * 119.99772 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99981 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 120.00086 * 359.97438 * 20 18 17 23 23 H 1.48494 * 109.47273 * 89.99841 * 22 20 18 24 24 H 1.48502 * 109.47070 * 210.00133 * 22 20 18 25 25 H 1.48505 * 109.46838 * 329.99970 * 22 20 18 26 26 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 29 29 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 30 30 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 31 31 H 1.09001 * 109.47289 * 299.99953 * 5 4 2 32 32 H 1.09002 * 109.47153 * 179.97438 * 5 4 2 33 33 H 1.09000 * 109.47360 * 180.02562 * 6 5 4 34 34 H 1.08998 * 109.47061 * 59.99332 * 6 5 4 35 35 H 1.09001 * 109.46812 * 299.99757 * 9 7 6 36 36 H 1.09000 * 109.47360 * 60.00124 * 9 7 6 37 37 H 1.09002 * 109.46935 * 180.02562 * 9 7 6 38 38 H 1.09001 * 109.47066 * 60.00169 * 10 2 1 39 39 H 0.97002 * 120.00183 * 335.00285 * 11 10 2 40 40 H 0.97000 * 119.99955 * 359.97438 * 14 12 11 41 41 H 1.09004 * 109.47541 * 299.99144 * 15 14 12 42 42 H 1.09003 * 109.47658 * 59.99700 * 15 14 12 43 43 H 1.08995 * 109.46792 * 299.99986 * 16 15 14 44 44 H 1.09003 * 109.46668 * 59.99657 * 16 15 14 45 45 H 1.08997 * 109.46938 * 300.00121 * 17 16 15 46 46 H 1.08994 * 109.47106 * 60.00497 * 17 16 15 47 47 H 0.97004 * 119.99663 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5700 -0.7206 -1.2497 6 6 4.0806 -1.4416 -0.0005 7 6 3.5705 -0.7203 1.2488 8 1 3.9335 0.3075 1.2487 9 6 4.0806 -1.4416 2.4980 10 6 2.0400 -0.7212 1.2491 11 7 1.5518 -0.0307 2.4453 12 6 1.4231 -0.7031 3.6063 13 8 1.7118 -1.8830 3.6608 14 7 0.9734 -0.0679 4.7067 15 6 0.8330 -0.7990 5.9684 16 6 0.3087 0.1473 7.0505 17 6 0.1615 -0.6164 8.3681 18 6 -0.3554 0.3155 9.4337 19 1 -0.5591 1.3489 9.1949 20 6 -0.5685 -0.1512 10.7134 21 7 -1.0201 0.6619 11.6432 22 14 -0.2170 -1.9388 11.1263 23 1 1.1911 -2.0750 11.5777 24 1 -1.1294 -2.3853 12.2095 25 1 -0.4333 -2.7773 9.9198 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.6767 -1.7489 -1.2494 30 1 1.6767 -0.2073 -2.1392 31 1 3.9330 0.3072 -1.2498 32 1 3.9333 -1.2348 -2.1395 33 1 5.1706 -1.4408 -0.0005 34 1 3.7176 -2.4693 -0.0002 35 1 3.7173 -2.4693 2.4979 36 1 5.1706 -1.4416 2.4980 37 1 3.7169 -0.9281 3.3880 38 1 1.6768 -1.7489 1.2491 39 1 1.3210 0.9104 2.4019 40 1 0.7427 0.8732 4.6632 41 1 0.1318 -1.6228 5.8350 42 1 1.8035 -1.1931 6.2700 43 1 1.0101 0.9708 7.1838 44 1 -0.6617 0.5417 6.7491 45 1 -0.5401 -1.4398 8.2344 46 1 1.1317 -1.0111 8.6697 47 1 -1.1703 0.3334 12.5435 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081492594.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:49 Heat of formation + Delta-G solvation = -93.943641 kcal Electronic energy + Delta-G solvation = -22707.552285 eV Core-core repulsion = 19501.644468 eV Total energy + Delta-G solvation = -3205.907817 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.51753 -39.59283 -36.96568 -35.20399 -35.04486 -34.36320 -33.24367 -31.36158 -28.90424 -27.17403 -27.09014 -24.62311 -22.74507 -22.21177 -21.81969 -21.33568 -20.93693 -19.14852 -18.80304 -17.54592 -16.94651 -16.40141 -16.02734 -15.82635 -15.67322 -15.33196 -14.88658 -14.82150 -14.73601 -14.40017 -13.81272 -13.79178 -13.59222 -13.30392 -13.23171 -13.20693 -12.71932 -12.68506 -12.59747 -12.18522 -11.90629 -11.88343 -11.76112 -11.67773 -11.58789 -11.40565 -11.34742 -11.32545 -11.11554 -10.96299 -10.76168 -10.16608 -9.65691 -8.29497 -6.33189 1.36847 1.38425 1.50454 1.78547 2.24879 2.36398 3.06320 3.36137 3.61022 3.79418 3.91847 4.11453 4.13168 4.21953 4.23577 4.42733 4.46195 4.48920 4.52530 4.55458 4.72967 4.81978 4.86956 4.91452 4.92445 4.94012 5.01024 5.03481 5.04584 5.16978 5.25521 5.27158 5.32758 5.34630 5.39997 5.43632 5.48333 5.56122 5.56776 5.59639 5.65750 5.72196 6.09536 6.27672 6.74727 7.18334 7.31694 7.68746 8.86917 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035732 B = 0.002805 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.427647 B = 9980.966144 C =10375.841928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 H 0.090 0.910 4 C -0.110 4.110 5 C -0.117 4.117 6 C -0.111 4.111 7 C -0.096 4.096 8 H 0.079 0.921 9 C -0.131 4.131 10 C 0.175 3.825 11 N -0.727 5.727 12 C 0.699 3.301 13 O -0.628 6.628 14 N -0.737 5.737 15 C 0.150 3.850 16 C -0.098 4.098 17 C -0.012 4.012 18 C -0.530 4.530 19 H 0.038 0.962 20 C 0.005 3.995 21 N -0.950 5.950 22 Si 0.947 3.053 23 H -0.267 1.267 24 H -0.284 1.284 25 H -0.248 1.248 26 H 0.053 0.947 27 H 0.042 0.958 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.053 0.947 35 H 0.038 0.962 36 H 0.050 0.950 37 H 0.033 0.967 38 H 0.058 0.942 39 H 0.408 0.592 40 H 0.409 0.591 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.020 0.980 46 H 0.019 0.981 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.531 -0.394 -30.326 31.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 H 0.109 0.891 4 C -0.148 4.148 5 C -0.154 4.154 6 C -0.149 4.149 7 C -0.116 4.116 8 H 0.097 0.903 9 C -0.188 4.188 10 C 0.069 3.931 11 N -0.383 5.383 12 C 0.399 3.601 13 O -0.509 6.509 14 N -0.392 5.392 15 C 0.025 3.975 16 C -0.136 4.136 17 C -0.050 4.050 18 C -0.568 4.568 19 H 0.056 0.944 20 C -0.192 4.192 21 N -0.591 5.591 22 Si 0.770 3.230 23 H -0.192 1.192 24 H -0.210 1.210 25 H -0.172 1.172 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.101 0.899 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.052 0.948 38 H 0.076 0.924 39 H 0.244 0.756 40 H 0.244 0.756 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.038 0.962 46 H 0.037 0.963 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.727 -1.461 -30.096 31.370 hybrid contribution -0.307 0.163 1.124 1.177 sum 8.421 -1.298 -28.972 30.199 Atomic orbital electron populations 1.21813 0.94650 1.01535 1.02320 1.21373 0.95976 1.00415 0.93090 0.89134 1.21567 0.95705 1.00565 0.96930 1.21552 0.95299 1.01265 0.97287 1.21566 1.00715 0.99008 0.93622 1.21544 0.94894 1.00203 0.94943 0.90287 1.21747 0.99577 1.00021 0.97503 1.20926 0.92946 0.96132 0.83051 1.45042 1.71102 1.14053 1.08072 1.16092 0.78070 0.84892 0.81064 1.90898 1.58495 1.16290 1.85247 1.45079 1.70880 1.14452 1.08833 1.21075 1.00134 0.94466 0.81844 1.21464 1.00916 0.97903 0.93342 1.19460 0.96402 0.95893 0.93224 1.21462 1.43338 0.97181 0.94798 0.94382 1.25977 0.94455 1.02502 0.96282 1.70058 1.47733 1.37835 1.03486 0.85706 0.78571 0.80044 0.78643 1.19243 1.20986 1.17200 0.92780 0.93926 0.91040 0.92497 0.89903 0.90959 0.90836 0.91241 0.92867 0.94325 0.93062 0.94776 0.92379 0.75597 0.75559 0.93007 0.92983 0.91794 0.91788 0.96159 0.96282 0.92507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.04 71.98 0.65 -1.16 16 2 C -0.09 -1.05 2.30 -10.79 -0.02 -1.08 16 3 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 4 C -0.11 -1.11 5.20 30.60 0.16 -0.95 16 5 C -0.12 -1.14 5.92 30.60 0.18 -0.96 16 6 C -0.11 -1.57 5.20 30.60 0.16 -1.41 16 7 C -0.10 -1.69 2.44 -10.77 -0.03 -1.72 16 8 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 9 C -0.13 -3.18 7.72 71.98 0.56 -2.63 16 10 C 0.17 3.18 1.63 45.01 0.07 3.25 16 11 N -0.73 -14.06 4.28 -457.74 -1.96 -16.01 16 12 C 0.70 19.59 6.92 179.05 1.24 20.83 16 13 O -0.63 -22.94 13.47 -3.99 -0.05 -22.99 16 14 N -0.74 -19.52 5.56 -478.52 -2.66 -22.18 16 15 C 0.15 4.90 5.67 86.38 0.49 5.39 16 16 C -0.10 -3.60 5.27 30.60 0.16 -3.44 16 17 C -0.01 -0.54 4.04 29.85 0.12 -0.42 16 18 C -0.53 -30.31 9.66 25.60 0.25 -30.06 16 19 H 0.04 2.36 7.99 -2.91 -0.02 2.34 16 20 C 0.00 0.27 5.47 84.65 0.46 0.74 16 21 N -0.95 -59.70 13.96 21.45 0.30 -59.40 16 22 Si 0.95 44.83 27.47 68.60 1.88 46.72 16 23 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 24 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 25 H -0.25 -11.05 6.54 99.48 0.65 -10.40 16 26 H 0.05 0.71 7.45 -2.39 -0.02 0.69 16 27 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.04 1.11 7.53 -2.39 -0.02 1.09 16 36 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.03 0.97 5.78 -2.39 -0.01 0.96 16 38 H 0.06 1.43 7.58 -2.39 -0.02 1.41 16 39 H 0.41 5.43 8.40 -92.71 -0.78 4.66 16 40 H 0.41 8.35 8.49 -92.71 -0.79 7.56 16 41 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 42 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.06 2.28 8.14 -2.39 -0.02 2.27 16 44 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 45 H 0.02 0.93 7.20 -2.39 -0.02 0.91 16 46 H 0.02 0.86 7.57 -2.39 -0.02 0.84 16 47 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -71.18 360.38 1.27 -69.91 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: -0.69 Total: 17.58 kcal Atomic # 6 Polarization: -18.07 SS G_CDS: 4.45 Total: -13.62 kcal Atomic # 7 Polarization: -93.28 SS G_CDS: -4.32 Total: -97.60 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -0.05 Total: -22.99 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.88 Total: 46.72 kcal Total: -71.18 1.27 -69.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081492594.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.033 kcal (2) G-P(sol) polarization free energy of solvation -71.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds