Wall clock time and date at job start Tue Mar 31 2020 06:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46884 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99312 * 2 1 3 5 5 C 1.53005 * 109.47159 * 60.00365 * 4 2 1 6 6 C 1.52997 * 109.47452 * 59.99536 * 5 4 2 7 7 C 1.53002 * 109.46817 * 300.00239 * 6 5 4 8 8 H 1.08992 * 109.47063 * 299.99823 * 7 6 5 9 9 C 1.53001 * 109.46637 * 179.97438 * 7 6 5 10 10 C 1.52997 * 109.47127 * 239.99248 * 2 1 3 11 11 N 1.46500 * 109.47007 * 60.00219 * 10 2 1 12 12 C 1.34777 * 120.00075 * 84.99755 * 11 10 2 13 13 O 1.21587 * 119.99681 * 0.02562 * 12 11 10 14 14 N 1.34775 * 120.00044 * 179.97438 * 12 11 10 15 15 C 1.46500 * 119.99839 * 180.02562 * 14 12 11 16 16 C 1.52998 * 109.46984 * 180.02562 * 15 14 12 17 17 C 1.53005 * 109.47024 * 179.97438 * 16 15 14 18 18 C 1.50697 * 109.47013 * 179.97438 * 17 16 15 19 19 H 1.08004 * 120.00576 * 0.02562 * 18 17 16 20 20 C 1.37878 * 119.99949 * 180.02562 * 18 17 16 21 21 N 1.31511 * 120.00333 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 120.00149 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47062 * 59.99494 * 22 20 18 24 24 H 1.48498 * 109.47267 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.46757 * 299.99816 * 22 20 18 26 26 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47050 * 300.00592 * 1 2 3 28 28 H 1.09001 * 109.47002 * 60.00326 * 1 2 3 29 29 H 1.09000 * 109.47486 * 299.99829 * 4 2 1 30 30 H 1.09002 * 109.46716 * 179.97438 * 4 2 1 31 31 H 1.09002 * 109.46935 * 299.99411 * 5 4 2 32 32 H 1.09001 * 109.46812 * 179.97438 * 5 4 2 33 33 H 1.08993 * 109.47194 * 179.97438 * 6 5 4 34 34 H 1.09002 * 109.46695 * 59.99734 * 6 5 4 35 35 H 1.09002 * 109.47508 * 299.99876 * 9 7 6 36 36 H 1.09000 * 109.47437 * 60.00474 * 9 7 6 37 37 H 1.09001 * 109.47109 * 179.97438 * 9 7 6 38 38 H 1.09002 * 109.47153 * 180.02562 * 10 2 1 39 39 H 0.96997 * 120.00274 * 264.99726 * 11 10 2 40 40 H 0.96997 * 120.00305 * 0.02562 * 14 12 11 41 41 H 1.08998 * 109.47120 * 300.00352 * 15 14 12 42 42 H 1.09002 * 109.47331 * 59.99749 * 15 14 12 43 43 H 1.08997 * 109.47026 * 299.99528 * 16 15 14 44 44 H 1.08996 * 109.47259 * 60.00290 * 16 15 14 45 45 H 1.08998 * 109.47126 * 300.00142 * 17 16 15 46 46 H 1.09005 * 109.46944 * 59.99883 * 17 16 15 47 47 H 0.97003 * 120.00508 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 1.5299 -2.1637 1.2495 6 6 2.0399 -2.8851 0.0003 7 6 1.5300 -2.1639 -1.2490 8 1 0.4400 -2.1638 -1.2490 9 6 2.0405 -2.8849 -2.4981 10 6 2.0401 -0.7214 -1.2491 11 7 1.5518 -0.0309 -2.4454 12 6 2.2286 1.0259 -2.9369 13 8 3.2446 1.4058 -2.3878 14 7 1.7796 1.6608 -4.0377 15 6 2.5156 2.8091 -4.5724 16 6 1.7983 3.3411 -5.8146 17 6 2.5666 4.5409 -6.3726 18 6 1.8604 5.0645 -7.5966 19 1 0.9539 4.5895 -7.9418 20 6 2.3714 6.1501 -8.2758 21 7 3.4749 6.7289 -7.8553 22 14 1.4956 6.7997 -9.7926 23 1 0.1192 7.2205 -9.4272 24 1 2.2414 7.9640 -10.3342 25 1 1.4298 5.7311 -10.8217 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6766 -0.2072 2.1393 30 1 3.1300 -0.7215 1.2491 31 1 0.4399 -2.1636 1.2494 32 1 1.8936 -2.6775 2.1393 33 1 1.6770 -3.9128 0.0007 34 1 3.1299 -2.8850 0.0004 35 1 3.1305 -2.8846 -2.4979 36 1 1.6775 -3.9127 -2.4983 37 1 1.6769 -2.3715 -3.3882 38 1 3.1301 -0.7218 -1.2489 39 1 0.7414 -0.3342 -2.8837 40 1 0.9692 1.3574 -4.4760 41 1 2.5636 3.5935 -3.8171 42 1 3.5261 2.5004 -4.8401 43 1 1.7500 2.5569 -6.5701 44 1 0.7880 3.6501 -5.5464 45 1 2.6146 5.3249 -5.6170 46 1 3.5771 4.2323 -6.6407 47 1 3.8342 7.4929 -8.3329 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081492595.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:53 Heat of formation + Delta-G solvation = -75.707793 kcal Electronic energy + Delta-G solvation = -22580.557033 eV Core-core repulsion = 19375.439982 eV Total energy + Delta-G solvation = -3205.117051 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.55386 -38.83658 -35.38911 -34.20019 -33.39127 -33.23461 -31.30976 -30.21195 -27.07121 -26.74605 -26.00589 -23.28904 -22.31798 -21.45121 -20.69904 -20.19623 -19.06400 -17.90174 -16.69268 -16.17348 -15.57408 -15.30620 -14.94178 -14.78576 -14.44412 -14.19182 -14.12398 -13.73480 -13.55320 -13.29842 -12.85822 -12.53341 -12.26766 -12.24432 -11.88232 -11.78309 -11.75833 -11.49632 -11.26589 -11.11598 -10.87400 -10.70256 -10.65766 -10.61509 -10.59535 -10.21113 -9.98289 -9.82979 -9.40771 -9.11722 -9.04319 -8.52670 -8.35410 -6.00104 -4.03266 2.89039 3.32876 3.37607 3.39537 3.44989 4.31331 4.36794 4.44681 4.46904 4.60819 4.80431 4.86878 5.05226 5.09660 5.15202 5.20720 5.29111 5.35444 5.43762 5.53964 5.60928 5.62392 5.70699 5.72316 5.80340 5.82220 5.85075 5.89614 5.92134 5.99677 6.07072 6.18160 6.22212 6.26686 6.58361 6.60594 6.65764 6.86256 7.05785 7.15594 7.65572 7.79036 7.98877 8.23478 8.39859 8.84388 9.03292 9.60688 11.11173 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038948 B = 0.002569 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.740013 B =10898.581997 C =11067.414086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.105 4.105 3 H 0.077 0.923 4 C -0.112 4.112 5 C -0.123 4.123 6 C -0.110 4.110 7 C -0.100 4.100 8 H 0.077 0.923 9 C -0.147 4.147 10 C 0.177 3.823 11 N -0.744 5.744 12 C 0.700 3.300 13 O -0.593 6.593 14 N -0.743 5.743 15 C 0.136 3.864 16 C -0.120 4.120 17 C 0.024 3.976 18 C -0.523 4.523 19 H 0.054 0.946 20 C 0.057 3.943 21 N -0.894 5.894 22 Si 0.893 3.107 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.057 0.943 38 H 0.086 0.914 39 H 0.392 0.608 40 H 0.392 0.608 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.834 -20.996 16.905 27.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.125 4.125 3 H 0.095 0.905 4 C -0.151 4.151 5 C -0.160 4.160 6 C -0.148 4.148 7 C -0.119 4.119 8 H 0.095 0.905 9 C -0.204 4.204 10 C 0.071 3.929 11 N -0.399 5.399 12 C 0.400 3.600 13 O -0.472 6.472 14 N -0.397 5.397 15 C 0.012 3.988 16 C -0.158 4.158 17 C -0.013 4.013 18 C -0.561 4.561 19 H 0.073 0.927 20 C -0.145 4.145 21 N -0.533 5.533 22 Si 0.721 3.279 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.104 0.896 39 H 0.225 0.775 40 H 0.225 0.775 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.037 0.963 46 H 0.037 0.963 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.732 -20.461 17.352 27.433 hybrid contribution -1.208 0.239 -1.311 1.799 sum -6.940 -20.222 16.041 26.728 Atomic orbital electron populations 1.21886 0.95320 1.01548 1.01640 1.21513 0.96087 1.00431 0.94444 0.90496 1.21534 1.00864 0.95306 0.97354 1.21607 1.01035 0.95754 0.97624 1.21544 1.01119 0.98667 0.93489 1.21435 1.00926 0.93906 0.95623 0.90492 1.21825 1.01564 0.99807 0.97253 1.20765 0.99489 0.89591 0.83057 1.45180 1.29975 1.33426 1.31314 1.16030 0.83246 0.79923 0.80790 1.90909 1.25974 1.68234 1.62040 1.45391 1.30391 1.34715 1.29243 1.21481 0.95405 0.85753 0.96117 1.21882 0.99582 1.00109 0.94217 1.19022 0.95417 0.91237 0.95665 1.21171 1.09930 1.13889 1.11107 0.92729 1.25030 0.95031 0.96728 0.97674 1.69955 1.20671 1.22416 1.40253 0.86644 0.79666 0.78394 0.83194 1.20262 1.21274 1.20255 0.92340 0.92991 0.92730 0.91858 0.91769 0.91643 0.92049 0.91675 0.91669 0.92531 0.92695 0.92422 0.89585 0.77471 0.77458 0.92066 0.92053 0.92824 0.92832 0.96267 0.96267 0.92870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 8.34 37.16 0.31 -0.91 16 2 C -0.10 -1.03 2.87 -90.62 -0.26 -1.29 16 3 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 4 C -0.11 -0.91 5.45 -26.73 -0.15 -1.06 16 5 C -0.12 -0.80 5.65 -26.73 -0.15 -0.95 16 6 C -0.11 -0.72 5.20 -26.73 -0.14 -0.86 16 7 C -0.10 -0.73 2.02 -90.62 -0.18 -0.92 16 8 H 0.08 0.51 6.43 -51.93 -0.33 0.18 16 9 C -0.15 -1.10 9.03 37.16 0.34 -0.77 16 10 C 0.18 1.77 1.59 -67.93 -0.11 1.67 16 11 N -0.74 -8.05 3.62 -58.68 -0.21 -8.27 16 12 C 0.70 10.75 8.53 -86.92 -0.74 10.01 16 13 O -0.59 -11.73 16.01 5.29 0.08 -11.64 16 14 N -0.74 -10.94 5.56 -65.23 -0.36 -11.30 16 15 C 0.14 2.47 5.67 -4.04 -0.02 2.44 16 16 C -0.12 -2.37 5.27 -26.73 -0.14 -2.52 16 17 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 18 C -0.52 -14.70 9.11 -34.44 -0.31 -15.02 16 19 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.89 -27.03 13.29 55.43 0.74 -26.30 16 22 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 26 H 0.06 0.41 4.81 -51.93 -0.25 0.16 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.49 7.60 -51.93 -0.39 0.09 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.40 6.43 -51.93 -0.33 0.07 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.06 0.45 7.45 -51.93 -0.39 0.07 16 38 H 0.09 1.09 7.58 -51.93 -0.39 0.70 16 39 H 0.39 3.23 8.40 -40.82 -0.34 2.88 16 40 H 0.39 4.61 8.49 -40.82 -0.35 4.26 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 363.87 15.07 5.48 5.48 Total: -1.00 -32.44 363.87 -9.75 -42.20 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -8.66 Total: 1.39 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: -1.80 Total: -8.14 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: 0.16 Total: -45.87 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.08 Total: -11.64 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.44 -9.75 -42.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081492595.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.511 kcal (2) G-P(sol) polarization free energy of solvation -32.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds