Wall clock time and date at job start Tue Mar 31 2020 06:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46884 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99312 * 2 1 3 5 5 C 1.53005 * 109.47159 * 60.00365 * 4 2 1 6 6 C 1.52997 * 109.47452 * 59.99536 * 5 4 2 7 7 C 1.53002 * 109.46817 * 300.00239 * 6 5 4 8 8 H 1.08992 * 109.47063 * 299.99823 * 7 6 5 9 9 C 1.53001 * 109.46637 * 179.97438 * 7 6 5 10 10 C 1.52997 * 109.47127 * 239.99248 * 2 1 3 11 11 N 1.46500 * 109.47007 * 60.00219 * 10 2 1 12 12 C 1.34777 * 120.00075 * 84.99755 * 11 10 2 13 13 O 1.21587 * 119.99681 * 0.02562 * 12 11 10 14 14 N 1.34775 * 120.00044 * 179.97438 * 12 11 10 15 15 C 1.46500 * 119.99839 * 180.02562 * 14 12 11 16 16 C 1.52998 * 109.46984 * 180.02562 * 15 14 12 17 17 C 1.53005 * 109.47024 * 179.97438 * 16 15 14 18 18 C 1.50697 * 109.47013 * 179.97438 * 17 16 15 19 19 H 1.08004 * 120.00576 * 0.02562 * 18 17 16 20 20 C 1.37878 * 119.99949 * 180.02562 * 18 17 16 21 21 N 1.31511 * 120.00333 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 120.00149 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47062 * 59.99494 * 22 20 18 24 24 H 1.48498 * 109.47267 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.46757 * 299.99816 * 22 20 18 26 26 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47050 * 300.00592 * 1 2 3 28 28 H 1.09001 * 109.47002 * 60.00326 * 1 2 3 29 29 H 1.09000 * 109.47486 * 299.99829 * 4 2 1 30 30 H 1.09002 * 109.46716 * 179.97438 * 4 2 1 31 31 H 1.09002 * 109.46935 * 299.99411 * 5 4 2 32 32 H 1.09001 * 109.46812 * 179.97438 * 5 4 2 33 33 H 1.08993 * 109.47194 * 179.97438 * 6 5 4 34 34 H 1.09002 * 109.46695 * 59.99734 * 6 5 4 35 35 H 1.09002 * 109.47508 * 299.99876 * 9 7 6 36 36 H 1.09000 * 109.47437 * 60.00474 * 9 7 6 37 37 H 1.09001 * 109.47109 * 179.97438 * 9 7 6 38 38 H 1.09002 * 109.47153 * 180.02562 * 10 2 1 39 39 H 0.96997 * 120.00274 * 264.99726 * 11 10 2 40 40 H 0.96997 * 120.00305 * 0.02562 * 14 12 11 41 41 H 1.08998 * 109.47120 * 300.00352 * 15 14 12 42 42 H 1.09002 * 109.47331 * 59.99749 * 15 14 12 43 43 H 1.08997 * 109.47026 * 299.99528 * 16 15 14 44 44 H 1.08996 * 109.47259 * 60.00290 * 16 15 14 45 45 H 1.08998 * 109.47126 * 300.00142 * 17 16 15 46 46 H 1.09005 * 109.46944 * 59.99883 * 17 16 15 47 47 H 0.97003 * 120.00508 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 1.5299 -2.1637 1.2495 6 6 2.0399 -2.8851 0.0003 7 6 1.5300 -2.1639 -1.2490 8 1 0.4400 -2.1638 -1.2490 9 6 2.0405 -2.8849 -2.4981 10 6 2.0401 -0.7214 -1.2491 11 7 1.5518 -0.0309 -2.4454 12 6 2.2286 1.0259 -2.9369 13 8 3.2446 1.4058 -2.3878 14 7 1.7796 1.6608 -4.0377 15 6 2.5156 2.8091 -4.5724 16 6 1.7983 3.3411 -5.8146 17 6 2.5666 4.5409 -6.3726 18 6 1.8604 5.0645 -7.5966 19 1 0.9539 4.5895 -7.9418 20 6 2.3714 6.1501 -8.2758 21 7 3.4749 6.7289 -7.8553 22 14 1.4956 6.7997 -9.7926 23 1 0.1192 7.2205 -9.4272 24 1 2.2414 7.9640 -10.3342 25 1 1.4298 5.7311 -10.8217 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6766 -0.2072 2.1393 30 1 3.1300 -0.7215 1.2491 31 1 0.4399 -2.1636 1.2494 32 1 1.8936 -2.6775 2.1393 33 1 1.6770 -3.9128 0.0007 34 1 3.1299 -2.8850 0.0004 35 1 3.1305 -2.8846 -2.4979 36 1 1.6775 -3.9127 -2.4983 37 1 1.6769 -2.3715 -3.3882 38 1 3.1301 -0.7218 -1.2489 39 1 0.7414 -0.3342 -2.8837 40 1 0.9692 1.3574 -4.4760 41 1 2.5636 3.5935 -3.8171 42 1 3.5261 2.5004 -4.8401 43 1 1.7500 2.5569 -6.5701 44 1 0.7880 3.6501 -5.5464 45 1 2.6146 5.3249 -5.6170 46 1 3.5771 4.2323 -6.6407 47 1 3.8342 7.4929 -8.3329 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081492595.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:52 Heat of formation + Delta-G solvation = -95.854103 kcal Electronic energy + Delta-G solvation = -22581.430643 eV Core-core repulsion = 19375.439982 eV Total energy + Delta-G solvation = -3205.990661 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.53804 -39.86734 -36.96234 -35.26824 -35.10473 -34.06844 -32.98485 -31.14715 -28.59818 -27.46474 -27.05128 -24.96513 -23.26123 -22.29791 -22.13648 -21.53043 -19.85943 -19.05776 -18.51870 -17.49275 -16.80860 -16.54417 -16.17877 -15.96138 -15.59786 -15.41436 -15.26229 -14.74611 -14.46376 -14.26391 -13.98837 -13.72574 -13.55501 -13.47904 -13.18227 -12.87860 -12.71860 -12.54788 -12.48294 -12.39547 -12.21902 -11.99790 -11.77323 -11.66580 -11.64060 -11.39344 -11.30402 -11.23445 -11.03631 -10.88591 -10.54651 -10.27121 -9.68753 -8.19026 -6.30862 1.41654 1.45051 1.52838 1.74259 2.18568 2.42331 3.14515 3.33815 3.63553 3.77817 3.92644 4.16400 4.16833 4.18610 4.23326 4.38509 4.41638 4.51978 4.56168 4.57369 4.68876 4.79749 4.86744 4.95932 4.96368 4.99871 5.02138 5.06949 5.12665 5.17193 5.22328 5.27777 5.30151 5.35942 5.41778 5.47230 5.49176 5.55798 5.59204 5.69503 5.71140 5.84357 6.06355 6.22833 6.86349 7.15996 7.38708 7.63269 8.93036 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038948 B = 0.002569 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.740013 B =10898.581997 C =11067.414086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.104 4.104 3 H 0.036 0.964 4 C -0.112 4.112 5 C -0.117 4.117 6 C -0.110 4.110 7 C -0.090 4.090 8 H 0.096 0.904 9 C -0.147 4.147 10 C 0.175 3.825 11 N -0.722 5.722 12 C 0.697 3.303 13 O -0.642 6.642 14 N -0.731 5.731 15 C 0.151 3.849 16 C -0.099 4.099 17 C 0.024 3.976 18 C -0.541 4.541 19 H 0.067 0.933 20 C -0.004 4.004 21 N -0.936 5.936 22 Si 0.968 3.032 23 H -0.265 1.265 24 H -0.286 1.286 25 H -0.265 1.265 26 H 0.080 0.920 27 H 0.054 0.946 28 H 0.047 0.953 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.054 0.946 35 H 0.040 0.960 36 H 0.073 0.927 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.410 0.590 40 H 0.411 0.589 41 H 0.043 0.957 42 H 0.044 0.956 43 H 0.068 0.932 44 H 0.068 0.932 45 H -0.009 1.009 46 H -0.009 1.009 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.697 -23.182 16.640 30.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.124 4.124 3 H 0.055 0.945 4 C -0.150 4.150 5 C -0.154 4.154 6 C -0.148 4.148 7 C -0.109 4.109 8 H 0.114 0.886 9 C -0.204 4.204 10 C 0.070 3.930 11 N -0.377 5.377 12 C 0.397 3.603 13 O -0.524 6.524 14 N -0.387 5.387 15 C 0.026 3.974 16 C -0.137 4.137 17 C -0.014 4.014 18 C -0.579 4.579 19 H 0.085 0.915 20 C -0.202 4.202 21 N -0.576 5.576 22 Si 0.792 3.208 23 H -0.190 1.190 24 H -0.212 1.212 25 H -0.190 1.190 26 H 0.099 0.901 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.073 0.927 35 H 0.059 0.941 36 H 0.092 0.908 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.246 0.754 40 H 0.247 0.753 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.087 0.913 44 H 0.086 0.914 45 H 0.009 0.991 46 H 0.010 0.990 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.660 -22.704 17.086 29.706 hybrid contribution -0.264 0.908 -1.168 1.503 sum -8.924 -21.796 15.918 28.427 Atomic orbital electron populations 1.21855 0.93553 1.02903 1.01525 1.21452 0.97468 0.98311 0.95138 0.94512 1.21530 1.00097 0.96771 0.96595 1.21587 1.01682 0.94092 0.98084 1.21567 1.00634 0.99608 0.92945 1.21408 1.01841 0.91439 0.96200 0.88562 1.21829 1.00627 1.00919 0.97042 1.20859 0.97845 0.91584 0.82699 1.45000 1.29862 1.31692 1.31179 1.16198 0.82924 0.80589 0.80580 1.90883 1.28324 1.69750 1.63406 1.45022 1.30732 1.33716 1.29231 1.21037 0.94850 0.86420 0.95096 1.21576 0.99252 0.98055 0.94807 1.18938 0.94820 0.92803 0.94833 1.21653 1.10408 1.14148 1.11730 0.91454 1.26047 0.95759 0.97102 1.01279 1.70110 1.22485 1.23052 1.41984 0.85454 0.78606 0.77794 0.78903 1.18979 1.21192 1.18952 0.90114 0.92712 0.93344 0.91348 0.93151 0.90381 0.90892 0.89624 0.92692 0.94081 0.90806 0.92759 0.92845 0.75391 0.75260 0.93830 0.93756 0.91320 0.91363 0.99057 0.99037 0.92802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 8.34 71.98 0.60 -1.47 16 2 C -0.10 -2.02 2.87 -10.79 -0.03 -2.05 16 3 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 4 C -0.11 -1.75 5.45 30.60 0.17 -1.59 16 5 C -0.12 -1.23 5.65 30.60 0.17 -1.06 16 6 C -0.11 -1.18 5.20 30.59 0.16 -1.02 16 7 C -0.09 -1.12 2.02 -10.79 -0.02 -1.14 16 8 H 0.10 0.89 6.43 -2.39 -0.02 0.88 16 9 C -0.15 -1.90 9.03 71.98 0.65 -1.25 16 10 C 0.18 3.48 1.59 44.99 0.07 3.56 16 11 N -0.72 -15.14 3.62 -457.82 -1.66 -16.80 16 12 C 0.70 21.67 8.53 179.06 1.53 23.19 16 13 O -0.64 -26.63 16.01 -3.99 -0.06 -26.69 16 14 N -0.73 -21.15 5.56 -478.54 -2.66 -23.81 16 15 C 0.15 5.60 5.67 86.38 0.49 6.09 16 16 C -0.10 -3.88 5.27 30.60 0.16 -3.72 16 17 C 0.02 1.26 4.97 29.85 0.15 1.41 16 18 C -0.54 -30.48 9.11 25.60 0.23 -30.25 16 19 H 0.07 3.54 7.74 -2.91 -0.02 3.51 16 20 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 21 N -0.94 -57.85 13.29 21.45 0.28 -57.57 16 22 Si 0.97 44.02 29.54 68.60 2.03 46.04 16 23 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 24 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 25 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 26 H 0.08 0.83 4.81 -2.39 -0.01 0.82 16 27 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.05 0.77 7.60 -2.39 -0.02 0.75 16 29 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.08 0.66 6.43 -2.39 -0.02 0.65 16 32 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.05 0.74 7.45 -2.39 -0.02 0.72 16 38 H 0.05 1.44 7.58 -2.39 -0.02 1.42 16 39 H 0.41 5.83 8.40 -92.71 -0.78 5.05 16 40 H 0.41 8.82 8.49 -92.71 -0.79 8.03 16 41 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 44 H 0.07 2.49 8.14 -2.39 -0.02 2.48 16 45 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 46 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 47 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -72.99 363.87 2.09 -70.90 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -0.63 Total: 17.02 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: 4.79 Total: -9.10 kcal Atomic # 7 Polarization: -94.14 SS G_CDS: -4.03 Total: -98.18 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -0.06 Total: -26.69 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Total: -72.99 2.09 -70.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081492595.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.955 kcal (2) G-P(sol) polarization free energy of solvation -72.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds