Wall clock time and date at job start Tue Mar 31 2020 06:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47368 * 2 1 4 4 C 1.52996 * 109.46995 * 239.99775 * 2 1 3 5 5 C 1.52998 * 109.47270 * 300.00041 * 4 2 1 6 6 C 1.52998 * 109.47292 * 300.00068 * 5 4 2 7 7 C 1.52996 * 109.47048 * 60.00174 * 6 5 4 8 8 H 1.08994 * 109.47414 * 59.99906 * 7 6 5 9 9 C 1.52998 * 109.47048 * 179.97438 * 7 6 5 10 10 C 1.52998 * 109.47012 * 120.00047 * 2 1 3 11 11 N 1.46506 * 109.47262 * 300.00018 * 10 2 1 12 12 C 1.34777 * 119.99873 * 275.00296 * 11 10 2 13 13 O 1.21592 * 119.99797 * 359.97438 * 12 11 10 14 14 N 1.34774 * 119.99902 * 179.97438 * 12 11 10 15 15 C 1.46499 * 119.99966 * 179.97438 * 14 12 11 16 16 C 1.53002 * 109.47337 * 180.02562 * 15 14 12 17 17 C 1.53000 * 109.47022 * 180.02562 * 16 15 14 18 18 C 1.50700 * 109.46585 * 179.97438 * 17 16 15 19 19 H 1.07993 * 120.00411 * 359.97438 * 18 17 16 20 20 C 1.37883 * 119.99862 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99663 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00136 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.46765 * 90.00302 * 22 20 18 24 24 H 1.48499 * 109.47159 * 209.99891 * 22 20 18 25 25 H 1.48498 * 109.47267 * 329.99961 * 22 20 18 26 26 H 1.09002 * 109.47176 * 299.99989 * 1 2 3 27 27 H 1.09007 * 109.47050 * 60.00027 * 1 2 3 28 28 H 1.09001 * 109.47368 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46968 * 179.97438 * 4 2 1 30 30 H 1.09007 * 109.47060 * 60.00205 * 4 2 1 31 31 H 1.09002 * 109.46987 * 180.02562 * 5 4 2 32 32 H 1.09007 * 109.46959 * 60.00323 * 5 4 2 33 33 H 1.08994 * 109.47090 * 299.99882 * 6 5 4 34 34 H 1.09001 * 109.47093 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.47080 * 179.97438 * 9 7 6 36 36 H 1.08993 * 109.47207 * 299.99947 * 9 7 6 37 37 H 1.09002 * 109.46901 * 59.99992 * 9 7 6 38 38 H 1.09000 * 109.47516 * 179.97438 * 10 2 1 39 39 H 0.96995 * 120.00050 * 94.72411 * 11 10 2 40 40 H 0.96999 * 120.00050 * 0.02562 * 14 12 11 41 41 H 1.09005 * 109.47136 * 300.00071 * 15 14 12 42 42 H 1.08996 * 109.47174 * 59.99413 * 15 14 12 43 43 H 1.09000 * 109.46757 * 299.99461 * 16 15 14 44 44 H 1.09002 * 109.47113 * 59.99591 * 16 15 14 45 45 H 1.09000 * 109.46771 * 299.99277 * 17 16 15 46 46 H 1.08997 * 109.47271 * 59.99996 * 17 16 15 47 47 H 0.97005 * 120.00108 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5300 -2.1638 -1.2492 6 6 2.0399 -2.8850 0.0001 7 6 1.5299 -2.1638 1.2493 8 1 0.4399 -2.1638 1.2493 9 6 2.0393 -2.8854 2.4985 10 6 2.0400 -0.7213 1.2492 11 7 1.5516 -0.0306 2.4455 12 6 2.2284 1.0262 2.9369 13 8 3.2445 1.4061 2.3877 14 7 1.7789 1.6618 4.0371 15 6 2.5148 2.8102 4.5716 16 6 1.7975 3.3424 5.8139 17 6 2.5658 4.5421 6.3717 18 6 1.8588 5.0666 7.5949 19 1 0.9521 4.5920 7.9396 20 6 2.3697 6.1524 8.2739 21 7 3.4737 6.7306 7.8538 22 14 1.4931 6.8030 9.7897 23 1 2.0166 6.1157 10.9974 24 1 1.7302 8.2640 9.9098 25 1 0.0356 6.5465 9.6669 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 -0.7209 -1.2494 30 1 1.6766 -0.2074 -2.1392 31 1 1.8937 -2.6777 -2.1389 32 1 0.4399 -2.1637 -1.2492 33 1 3.1299 -2.8851 0.0001 34 1 1.6762 -3.9126 0.0003 35 1 1.6763 -2.3713 3.3885 36 1 1.6756 -3.9129 2.4982 37 1 3.1293 -2.8858 2.4987 38 1 3.1300 -0.7217 1.2491 39 1 0.7390 -0.3315 2.8814 40 1 0.9685 1.3584 4.4754 41 1 3.5251 2.5012 4.8403 42 1 2.5637 3.5942 3.8160 43 1 0.7872 3.6513 5.5456 44 1 1.7491 2.5581 6.5694 45 1 3.5762 4.2336 6.6399 46 1 2.6138 5.3261 5.6160 47 1 3.8334 7.4943 8.3317 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081492596.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:55 Heat of formation + Delta-G solvation = -75.786046 kcal Electronic energy + Delta-G solvation = -22580.495156 eV Core-core repulsion = 19375.374711 eV Total energy + Delta-G solvation = -3205.120445 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.55341 -38.83619 -35.38914 -34.19902 -33.39236 -33.23544 -31.30988 -30.21216 -27.07201 -26.74644 -26.00655 -23.29002 -22.31824 -21.45056 -20.69932 -20.19718 -19.06459 -17.90163 -16.69317 -16.17599 -15.57368 -15.30675 -14.94189 -14.78621 -14.44106 -14.19121 -14.12356 -13.73610 -13.55367 -13.29805 -12.85853 -12.53296 -12.27225 -12.24916 -11.88241 -11.78042 -11.75856 -11.49703 -11.26544 -11.11572 -10.89466 -10.70499 -10.65779 -10.61012 -10.57364 -10.21152 -9.98334 -9.83358 -9.41076 -9.10665 -9.04311 -8.52691 -8.35770 -6.00419 -4.03427 2.89020 3.31529 3.37844 3.40668 3.44945 4.31317 4.36793 4.44638 4.46836 4.60842 4.80440 4.86808 5.05175 5.09648 5.15197 5.20739 5.29094 5.35286 5.43781 5.53936 5.60875 5.62465 5.70660 5.72257 5.80318 5.82181 5.85032 5.89646 5.92130 5.99647 6.07051 6.18149 6.22180 6.26638 6.58336 6.60531 6.65707 6.86225 7.05752 7.15574 7.65737 7.78946 7.98761 8.23453 8.39755 8.84363 9.03371 9.60571 11.10909 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038942 B = 0.002569 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.836483 B =10898.621140 C =11067.322352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.105 4.105 3 H 0.077 0.923 4 C -0.112 4.112 5 C -0.123 4.123 6 C -0.110 4.110 7 C -0.100 4.100 8 H 0.077 0.923 9 C -0.147 4.147 10 C 0.177 3.823 11 N -0.744 5.744 12 C 0.700 3.300 13 O -0.593 6.593 14 N -0.743 5.743 15 C 0.136 3.864 16 C -0.120 4.120 17 C 0.024 3.976 18 C -0.522 4.522 19 H 0.055 0.945 20 C 0.056 3.944 21 N -0.894 5.894 22 Si 0.893 3.107 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.274 1.274 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.086 0.914 39 H 0.392 0.608 40 H 0.392 0.608 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.846 -21.009 -16.911 27.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.125 4.125 3 H 0.095 0.905 4 C -0.151 4.151 5 C -0.160 4.160 6 C -0.148 4.148 7 C -0.119 4.119 8 H 0.095 0.905 9 C -0.204 4.204 10 C 0.071 3.929 11 N -0.399 5.399 12 C 0.400 3.600 13 O -0.472 6.472 14 N -0.397 5.397 15 C 0.012 3.988 16 C -0.158 4.158 17 C -0.014 4.014 18 C -0.560 4.560 19 H 0.073 0.927 20 C -0.145 4.145 21 N -0.533 5.533 22 Si 0.721 3.279 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.199 1.199 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.104 0.896 39 H 0.225 0.775 40 H 0.225 0.775 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.037 0.963 46 H 0.037 0.963 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.749 -20.475 -17.359 27.452 hybrid contribution -1.193 0.243 1.314 1.791 sum -6.943 -20.232 -16.045 26.739 Atomic orbital electron populations 1.21888 0.95320 1.01551 1.01640 1.21514 0.96086 1.00432 0.94452 0.90494 1.21532 1.00865 0.95307 0.97352 1.21605 1.01034 0.95750 0.97625 1.21544 1.01117 0.98669 0.93489 1.21434 1.00926 0.93905 0.95626 0.90503 1.21823 1.01569 0.99798 0.97256 1.20767 0.99496 0.89589 0.83050 1.45181 1.29802 1.33494 1.31416 1.16032 0.83259 0.79904 0.80796 1.90911 1.25996 1.68226 1.62028 1.45391 1.30373 1.34676 1.29297 1.21482 0.95406 0.85755 0.96115 1.21883 0.99585 1.00104 0.94214 1.19026 0.95418 0.91243 0.95693 1.21208 1.09889 1.13813 1.11102 0.92676 1.25035 0.95055 0.96729 0.97683 1.69970 1.20702 1.22488 1.40126 0.86582 0.79964 0.78080 0.83290 1.20668 1.21210 1.19915 0.92740 0.92982 0.92338 0.91767 0.91865 0.92047 0.91642 0.91663 0.91677 0.92416 0.92690 0.92541 0.89577 0.77472 0.77458 0.92063 0.92056 0.92831 0.92824 0.96263 0.96256 0.92934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 8.34 37.16 0.31 -0.91 16 2 C -0.11 -1.03 2.87 -90.62 -0.26 -1.29 16 3 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 4 C -0.11 -0.91 5.45 -26.73 -0.15 -1.06 16 5 C -0.12 -0.80 5.65 -26.73 -0.15 -0.95 16 6 C -0.11 -0.72 5.20 -26.73 -0.14 -0.86 16 7 C -0.10 -0.73 2.02 -90.62 -0.18 -0.92 16 8 H 0.08 0.51 6.43 -51.93 -0.33 0.18 16 9 C -0.15 -1.10 9.04 37.16 0.34 -0.77 16 10 C 0.18 1.77 1.59 -67.92 -0.11 1.67 16 11 N -0.74 -8.05 3.62 -58.67 -0.21 -8.26 16 12 C 0.70 10.75 8.53 -86.92 -0.74 10.01 16 13 O -0.59 -11.72 16.01 5.28 0.08 -11.64 16 14 N -0.74 -10.94 5.56 -65.22 -0.36 -11.30 16 15 C 0.14 2.47 5.67 -4.04 -0.02 2.44 16 16 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 17 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 18 C -0.52 -14.67 9.11 -34.44 -0.31 -14.99 16 19 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 21 N -0.89 -27.03 13.29 55.43 0.74 -26.29 16 22 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 26 H 0.05 0.49 7.60 -51.93 -0.39 0.09 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.41 4.81 -51.93 -0.25 0.16 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.40 6.43 -51.92 -0.33 0.07 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.45 7.45 -51.93 -0.39 0.07 16 36 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.09 1.09 7.58 -51.93 -0.39 0.70 16 39 H 0.39 3.23 8.41 -40.82 -0.34 2.88 16 40 H 0.39 4.61 8.49 -40.82 -0.35 4.26 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 LS Contribution 363.89 15.07 5.48 5.48 Total: -1.00 -32.47 363.89 -9.75 -42.22 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -8.67 Total: 1.35 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: -1.80 Total: -8.14 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: 0.16 Total: -45.85 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.08 Total: -11.64 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.47 -9.75 -42.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081492596.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.565 kcal (2) G-P(sol) polarization free energy of solvation -32.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds